vOTU vOTU-141821

vOTU: vOTU-141821

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-141821
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00095 → vOTU-141821
Host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Limosilactobacillus → Limosilactobacillus reuteri_E
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1438093
Biosample ID	N/A
Genome length (bp)	20,172 bps
CheckV completeness	52.04% (Medium-quality)
CDS count	29
CDS density	92.44%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Limosilactobacillus → Limosilactobacillus reuteri_E	Total connections	1	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 52.04)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1438093_1	phrog_2562	129.0	4.6e-38	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1438093_1	UniRef90_A0A496N4U6	422.0	0	N/A	N/A
eggNOG-mapper	UHGV-1438093_1	290402.Cbei_1623	139.0	1.21e-36	N/A	N/A
Pfam	UHGV-1438093_1	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-1438093_1	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-1438093_2	phrog_9804	121.1	8e-36	N/A	unknown function
UniRef90	UHGV-1438093_2	UniRef90_A0A496N5L6	254.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1438093_2	1410650.JHWL01000003_gene2847	139.0	1.65e-39	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1438093_2	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1438093_2	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-1438093_3	K03111	105.8	6.8e-31	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1438093_3	phrog_44	103.3	3e-30	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1438093_3	UniRef90_A0A496N839	159.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1438093_3	679200.HMPREF9333_00481	158.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1438093_3	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1438093_3	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1438093_3	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1438093_3	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1438093_4	PF04606,NF007241	N/A	N/A	N/A	N/A
PHROG	UHGV-1438093_5	phrog_36	53.9	0.0000000000000034	transcriptional regulator	transcription regulation
UniRef90	UHGV-1438093_5	UniRef90_A0A4Z0XVP8	56.6	0.000000175	RNA polymerase sigma factor SigO	N/A
eggNOG-mapper	UHGV-1438093_5	1118057.CAGX01000058_gene94	51.6	0.00000212	sigma factor activity	N/A
COG	UHGV-1438093_5	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1438093_5	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1438093_6	phrog_606	57.3	3.3e-16	terminase small subunit	head and packaging
UniRef90	UHGV-1438093_6	UniRef90_UPI001D088AD3	186.0	0	DNA-packaging protein	N/A
Pfam	UHGV-1438093_6	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1438093_6	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1438093_7	K06909	89.3	5e-26	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1438093_7	phrog_2	74.7	1.8e-21	terminase large subunit	head and packaging
UniRef90	UHGV-1438093_7	UniRef90_A0A174WYX0	708.0	0	Phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-1438093_7	1304866.K413DRAFT_0811	697.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-1438093_7	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1438093_7	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1438093_8	phrog_533	271.9	0	portal protein	head and packaging
UniRef90	UHGV-1438093_8	UniRef90_A0A2Y9C5V4	607.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-1438093_8	742740.HMPREF9474_03501	587.0	0	N/A	N/A
structural_annotation	UHGV-1438093_8	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1438093_9	phrog_25639	87.1	1.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-1438093_9	1282664.H354_06631	65.5	0.00000000000017	N/A	N/A
PHROG	UHGV-1438093_10	phrog_581	206.8	0	minor head protein	head and packaging
UniRef90	UHGV-1438093_10	UniRef90_UPI00138AC1F0	379.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1438093_10	742740.HMPREF9474_03503	363.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1438093_10	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1438093_10	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1438093_10	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1438093_11	phrog_59	140.0	8.80015e-42	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1438093_11	UniRef90_UPI0013E35C2F	234.0	0	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1438093_11	1206110.L0P6F5_9CAUD	132.0	4.69e-36	sequence-specific DNA binding transcription factor activity	N/A
PADLOC	UHGV-1438093_11	HEase_00016	102.3	5.2e-30	homing endonuclease	RM
Pfam	UHGV-1438093_11	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1438093_11	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-1438093_11	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
structural_annotation	UHGV-1438093_11	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-1438093_12	K11044	41.0	2.3e-16	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	N/A
PHROG	UHGV-1438093_12	phrog_595	41.3	0.000000000022	head maturation protease	head and packaging
UniRef90	UHGV-1438093_12	UniRef90_A0A174Z3H5	108.0	1.02e-26	NAD(+)--arginine ADP-ribosyltransferase EFV	N/A
eggNOG-mapper	UHGV-1438093_12	33035.JPJF01000093_gene2255	117.0	3.13e-29	N/A	N/A
Pfam	UHGV-1438093_12	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-1438093_12	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
PHROG	UHGV-1438093_14	phrog_2303	155.9	0	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1438093_14	483218.BACPEC_01156	197.0	0	N/A	N/A
PHROG	UHGV-1438093_15	phrog_422	349.6	0	major head protein	head and packaging
UniRef90	UHGV-1438093_15	UniRef90_A0A851IM94	515.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-1438093_15	742740.HMPREF9474_03505	482.0	0	N/A	N/A
structural_annotation	UHGV-1438093_15	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1438093_16	phrog_1378	66.7	2.7e-19	N/A	unknown function
UniRef90	UHGV-1438093_16	UniRef90_A0A0B3VH35	62.4	0.0000000000481	HALZ domain-containing protein	N/A
eggNOG-mapper	UHGV-1438093_16	195103.CPF_0957	67.8	0.0000000000000762	N/A	N/A
PHROG	UHGV-1438093_17	phrog_541	76.9	2.3e-22	head-tail adaptor	connector
eggNOG-mapper	UHGV-1438093_17	1304866.K413DRAFT_0783	173.0	0	N/A	N/A
PHROG	UHGV-1438093_18	phrog_8710	144.0	3.50325e-43	N/A	unknown function
eggNOG-mapper	UHGV-1438093_18	742740.HMPREF9474_03508	158.0	0	N/A	N/A
structural_annotation	UHGV-1438093_18	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1438093_19	phrog_556	67.4	2.2e-19	minor head protein	head and packaging
eggNOG-mapper	UHGV-1438093_19	585501.HMPREF6123_0831	168.0	0	N/A	N/A
Pfam	UHGV-1438093_19	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
PHROG	UHGV-1438093_20	phrog_2595	82.7	4e-24	head-tail connector protein	connector
UniRef90	UHGV-1438093_20	UniRef90_UPI001D068DAC	162.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1438093_20	742740.HMPREF9474_03510	142.0	9.61991e-42	N/A	N/A
Pfam	UHGV-1438093_20	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1438093_20	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1438093_21	phrog_820	127.4	7.3e-38	major tail protein	tail
eggNOG-mapper	UHGV-1438093_21	483218.BACPEC_01149	264.0	0	domain, Protein	N/A
COG	UHGV-1438093_21	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1438093_21	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1438093_22	phrog_8300	84.2	1.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-1438093_22	742740.HMPREF9474_03512	115.0	3.54e-32	N/A	N/A
structural_annotation	UHGV-1438093_22	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1438093_23	phrog_8355	72.3	4e-21	N/A	unknown function
UniRef90	UHGV-1438093_23	UniRef90_UPI0011579C35	82.0	1.87e-18	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1438093_23	742740.HMPREF9474_03513	79.3	2.57e-18	N/A	N/A
PHROG	UHGV-1438093_24	phrog_1535	313.1	0	tail length tape measure protein	tail
UniRef90	UHGV-1438093_24	UniRef90_A0A174WQ97	703.0	0	Phage-like protein	N/A
eggNOG-mapper	UHGV-1438093_24	742740.HMPREF9474_03514	619.0	0	tape measure	N/A
COG	UHGV-1438093_24	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1438093_24	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1438093_25	phrog_1194	63.3	3.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-1438093_25	1304866.K413DRAFT_0775	199.0	0	N/A	N/A
structural_annotation	UHGV-1438093_25	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1438093_26	phrog_13879	388.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1438093_26	742740.HMPREF9474_03516	829.0	0	N/A	N/A
structural_annotation	UHGV-1438093_26	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1438093_27	phrog_18725	92.9	3.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-1438093_27	1298920.KI911353_gene4838	189.0	0	N/A	N/A
eggNOG-mapper	UHGV-1438093_28	411902.CLOBOL_00122	123.0	4.37e-34	N/A	N/A
PHROG	UHGV-1438093_29	phrog_35834	46.0	0.00000000000046	N/A	unknown function
eggNOG-mapper	UHGV-1438093_29	1095750.HMPREF9970_0325	53.5	0.000000124	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1438093	Yes	20,172	37	52	1