vOTU vOTU-141953

vOTU: vOTU-141953

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-141953
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00041 → vSUBFAM-00234 → vOTU-141953
Host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Clostridioides → Clostridioides difficile
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0334681
Biosample ID	SAMN07521727
Genome length (bp)	21,590 bps
CheckV completeness	51.23% (Medium-quality)
CDS count	43
CDS density	90.01%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Clostridioides → Clostridioides difficile	Total connections	36	Host agreement	91.67
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 51.23)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0334681_3	phrog_3584	261.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0334681_3	UniRef90_A0A4P8IFK4	201.0	0	N/A	N/A
eggNOG-mapper	UHGV-0334681_3	1321814.HMPREF9089_00921	237.0	0	N/A	N/A
structural_annotation	UHGV-0334681_3	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0334681_4	phrog_1974	306.6	0	N/A	unknown function
UniRef90	UHGV-0334681_4	UniRef90_A0A371ISD9	298.0	0	Nucleoid-associated protein	N/A
eggNOG-mapper	UHGV-0334681_4	1391646.AVSU01000002_gene14	295.0	0	N/A	N/A
Pfam	UHGV-0334681_4	PF04245	N/A	N/A	37-kD nucleoid-associated bacterial protein	NA37
COG	UHGV-0334681_4	COG3081	N/A	N/A	dsDNA-binding nucleoid-associated protein YejK/NdpA	N/A
structural_annotation	UHGV-0334681_4	PF04245,MF_00730,NF001557,COG3081	N/A	N/A	N/A	N/A
Pfam	UHGV-0334681_6	PF09388	N/A	N/A	Spo0E like sporulation regulatory protein	SpoOE-like
PHROG	UHGV-0334681_9	phrog_4292	49.7	0.000000000000045	N/A	unknown function
KOfam	UHGV-0334681_13	K03111	133.0	3.4e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0334681_13	phrog_44	149.2	2.10195e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0334681_13	UniRef90_A0A644VJW0	251.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0334681_13	1151292.QEW_4325	155.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0334681_13	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0334681_13	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0334681_13	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0334681_13	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0334681_13	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-0334681_14	UniRef90_UPI001651AABF	98.2	7.86e-26	beta-glucosidase	N/A
PHROG	UHGV-0334681_20	phrog_824	147.5	3.92364e-44	N/A	unknown function
UniRef90	UHGV-0334681_20	UniRef90_A0A644VKA9	177.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0334681_20	1291050.JAGE01000001_gene480	124.0	5.17e-35	VRR_NUC	N/A
Pfam	UHGV-0334681_20	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0334681_20	PF08774	N/A	N/A	N/A	N/A
KOfam	UHGV-0334681_21	K06284	64.1	2.1e-18	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	N/A
PHROG	UHGV-0334681_21	phrog_4681	59.1	4.9e-17	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0334681_21	UniRef90_A0A1I5W0N8	62.4	0.000000000042	Transcriptional pleiotropic regulator of transition state genes	N/A
eggNOG-mapper	UHGV-0334681_21	1304880.JAGB01000002_gene2412	62.4	0.00000000000924	Transcriptional regulator, AbrB family	N/A
Pfam	UHGV-0334681_21	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-0334681_21	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-0334681_21	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
UniRef90	UHGV-0334681_22	UniRef90_A0A1C5VJ20	216.0	0	N/A	N/A
eggNOG-mapper	UHGV-0334681_22	1031288.AXAA01000044_gene1957	94.4	9.38e-22	N/A	N/A
Pfam	UHGV-0334681_22	PF18892	N/A	N/A	N/A	DUF5651
structural_annotation	UHGV-0334681_22	PF18892	N/A	N/A	N/A	N/A
PHROG	UHGV-0334681_23	phrog_98	102.9	2.4e-30	N/A	unknown function
UniRef90	UHGV-0334681_23	UniRef90_Q5YA89	117.0	1.74e-31	21	N/A
eggNOG-mapper	UHGV-0334681_23	294382.Q5YA89_9CAUD	117.0	2.91e-32	YopX protein	N/A
Pfam	UHGV-0334681_23	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0334681_23	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0334681_23	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0334681_25	phrog_21101	73.8	2.5e-22	N/A	unknown function
UniRef90	UHGV-0334681_25	UniRef90_A0A0G9LD19	84.3	8.89e-19	N/A	N/A
eggNOG-mapper	UHGV-0334681_25	1151292.QEW_1614	84.3	1.28e-18	Protein conserved in bacteria	N/A
Pfam	UHGV-0334681_25	PF07866	N/A	N/A	N/A	DUF1653
COG	UHGV-0334681_25	COG4728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0334681_25	PF07866,COG4728	N/A	N/A	N/A	N/A
KOfam	UHGV-0334681_26	K01520	94.1	1.7e-27	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0334681_26	phrog_135	115.1	4.2e-34	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0334681_26	UniRef90_A0A1H8JTB5	199.0	0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-0334681_26	1035196.HMPREF9998_00926	192.0	0	dUTPase	N/A
Pfam	UHGV-0334681_26	PF00692	N/A	N/A	dUTPase	dUTPase
COG	UHGV-0334681_26	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0334681_26	PF00692,MF_00116,NF010561,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0334681_27	phrog_36	63.2	4.8e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0334681_27	UniRef90_A0A1C6GVC2	95.1	2.07e-22	RNA polymerase sigma factor, sigma-70 family	N/A
eggNOG-mapper	UHGV-0334681_27	1540257.JQMW01000013_gene751	54.3	0.000000239	sigma factor activity	N/A
COG	UHGV-0334681_27	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0334681_27	PF08281,MF_00245,TIGR01636,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0334681_28	phrog_119	67.8	1.7e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0334681_28	UniRef90_A0A1I3QJN8	213.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0334681_28	768710.DesyoDRAFT_1275	104.0	1.47e-27	HNH nucleases	N/A
Pfam	UHGV-0334681_28	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0334681_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0334681_29	phrog_5110	120.1	7.6e-36	terminase small subunit	head and packaging
UniRef90	UHGV-0334681_29	UniRef90_UPI001E64C17F	144.0	1.24996e-42	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0334681_29	349161.Dred_2608	146.0	3.78351e-44	N/A	N/A
Pfam	UHGV-0334681_29	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0334681_29	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0334681_30	phrog_9	326.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0334681_30	UniRef90_UPI0011061D03	1016.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0334681_30	1211817.CCAT010000053_gene2129	638.0	0	Phage Terminase	N/A
Pfam	UHGV-0334681_30	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0334681_30	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0334681_30	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0334681_30	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0334681_32	phrog_2470	53.3	0.0000000000000042	membrane protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0334681_32	UniRef90_UPI001E59A4F0	154.0	0	N/A	N/A
eggNOG-mapper	UHGV-0334681_32	999413.HMPREF1094_00551	50.4	0.00000503	N/A	N/A
Pfam	UHGV-0334681_32	PF11750	N/A	N/A	N/A	DUF3307
structural_annotation	UHGV-0334681_32	PF11750	N/A	N/A	N/A	N/A
PHROG	UHGV-0334681_33	phrog_12	111.0	7.7e-33	portal protein	head and packaging
UniRef90	UHGV-0334681_33	UniRef90_UPI00148519DF	600.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0334681_33	349161.Dred_2606	266.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0334681_33	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0334681_33	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0334681_33	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0334681_33	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0334681_34	K01358	136.4	2.9e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0334681_34	phrog_94	211.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0334681_34	UniRef90_A0A1C5YER3	206.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0334681_34	1232452.BAIB02000007_gene1626	172.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0334681_34	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0334681_34	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0334681_34	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0334681_35	phrog_10	90.5	1.5e-26	major head protein	head and packaging
UniRef90	UHGV-0334681_35	UniRef90_A0A1C5YEV1	499.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0334681_35	1211817.CCAT010000053_gene2132	318.0	0	Phage capsid family	N/A
Pfam	UHGV-0334681_35	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0334681_35	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0334681_35	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0334681_35	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0334681_36	phrog_749	63.7	2.5e-18	N/A	unknown function
UniRef90	UHGV-0334681_36	UniRef90_A0A1I3QJG6	176.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0334681_36	1450694.BTS2_0540	64.3	0.00000000000355	N/A	N/A
Pfam	UHGV-0334681_36	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
PHROG	UHGV-0334681_37	phrog_5635	63.4	4.2e-18	head-tail adaptor	connector
UniRef90	UHGV-0334681_37	UniRef90_A0A1I3QJF5	211.0	0	Phage head-tail adaptor, putative, SPP1 family	N/A
eggNOG-mapper	UHGV-0334681_37	1220589.CD32_01710	61.2	0.0000000002	N/A	N/A
Pfam	UHGV-0334681_37	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0334681_37	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0334681_37	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0334681_38	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0334681_39	phrog_5509	108.4	4.4e-32	neck protein	connector
eggNOG-mapper	UHGV-0334681_39	1123315.AUIP01000014_gene1956	55.1	0.000000102	N/A	N/A
structural_annotation	UHGV-0334681_39	TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0334681_40	UniRef90_A0A316S919	182.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0334681_40	1384484.AEQU_1175	159.0	0	N/A	N/A
structural_annotation	UHGV-0334681_40	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0334681_41	1121866.AUGK01000006_gene886	57.8	0.00000000443	N/A	N/A
PHROG	UHGV-0334681_42	phrog_59	118.1	4.5e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0334681_42	UniRef90_W1XZM1	166.0	0	Homing nuclease	N/A
eggNOG-mapper	UHGV-0334681_42	767806.D7PQ37_9CAUD	132.0	1.36e-36	HNH endonuclease	N/A
PADLOC	UHGV-0334681_42	HEase_00016	118.0	8.7e-35	homing endonuclease	RM
Pfam	UHGV-0334681_42	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0334681_42	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0334681_42	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0334681_43	phrog_23464	238.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0334681_43	1232452.BAIB02000007_gene1616	141.0	1.56e-32	phage tail tape measure protein	N/A
COG	UHGV-0334681_43	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0334681_43	PF20155,COG5280	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0334681	Yes	21,590	28	51	1