vOTU vOTU-142341

vOTU: vOTU-142341

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-142341
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00025 → vSUBFAM-00877 → vGENUS-19107 → vOTU-142341
Host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-628 → CAG-628 sp000438415
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0003330
Biosample ID	N/A
Genome length (bp)	32,460 bps
CheckV completeness	87.53% (Medium-quality)
CDS count	60
CDS density	93.93%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-628 → CAG-628 sp000438415	Total connections	6	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660	Total connections	4	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 87.53)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-0003330_2	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-0003330_3	phrog_18725	61.2	1.9e-17	N/A	unknown function
eggNOG-mapper	UHGV-0003330_3	1120746.CCNL01000014_gene2212	60.8	0.000000000812	N/A	N/A
PHROG	UHGV-0003330_4	phrog_13879	243.0	0	N/A	unknown function
UniRef90	UHGV-0003330_4	UniRef90_A0A843H6J9	129.0	1.87e-27	Dockerin type I repeat-containing protein	N/A
eggNOG-mapper	UHGV-0003330_4	665956.HMPREF1032_03630	152.0	2.7e-36	N/A	N/A
structural_annotation	UHGV-0003330_4	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0003330_5	phrog_1194	63.1	4.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0003330_5	585501.HMPREF6123_0824	53.1	0.000000418	N/A	N/A
structural_annotation	UHGV-0003330_5	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0003330_6	K10421	49.0	0.000000000000046	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0003330_6	phrog_1535	115.7	7.6e-35	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0003330_6	1280692.AUJL01000027_gene2150	79.3	0.0000000000049	phage tail tape measure protein	N/A
COG	UHGV-0003330_6	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0003330_8	PF12363	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0003330_10	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0003330_11	665956.HMPREF1032_03624	58.5	0.00000000378	N/A	N/A
structural_annotation	UHGV-0003330_11	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0003330_12	665956.HMPREF1032_03623	80.1	2.12e-16	N/A	N/A
structural_annotation	UHGV-0003330_12	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0003330_13	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0003330_15	PF12949,PF18885	N/A	N/A	N/A	N/A
UniRef90	UHGV-0003330_16	UniRef90_A0A3D1PN29	270.0	0	S-l_SbsC_C domain-containing protein	N/A
structural_annotation	UHGV-0003330_16	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0003330_17	phrog_172	99.4	4.4e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0003330_17	UniRef90_A0A3D1PKZ2	110.0	1.73e-26	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0003330_17	1499683.CCFF01000014_gene3909	74.7	0.000000000000177	N/A	N/A
Pfam	UHGV-0003330_17	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0003330_17	PF14265	N/A	N/A	N/A	N/A
UniRef90	UHGV-0003330_19	UniRef90_R5MSH4	417.0	0	Phage head morphogenesis protein SPP1 gp7 family	N/A
eggNOG-mapper	UHGV-0003330_19	139871.A9D9S7_9VIRU	66.6	0.00000000813	Phage Mu protein F like protein	N/A
structural_annotation	UHGV-0003330_19	PF03496,PF04233,MF_04142,NF041404,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0003330_20	phrog_64	183.4	0	portal protein	head and packaging
UniRef90	UHGV-0003330_20	UniRef90_R5MTF8	907.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-0003330_20	665956.HMPREF1032_03614	272.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0003330_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0003330_20	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0003330_21	phrog_30251	579.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0003330_21	UniRef90_R5M9P5	850.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0003330_21	1522092.A0A090EUA8_9CAUD	499.0	0	Pfam:Terminase_6C	N/A
Pfam	UHGV-0003330_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0003330_21	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0003330_21	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
structural_annotation	UHGV-0003330_21	PF17289,PF03237,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
KOfam	UHGV-0003330_22	K07474	119.9	3.9e-35	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0003330_22	phrog_51	128.3	5.2e-38	terminase small subunit	head and packaging
UniRef90	UHGV-0003330_22	UniRef90_R5MF68	243.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0003330_22	445335.CBN_2993	124.0	2.68e-33	Terminase small subunit	N/A
Pfam	UHGV-0003330_22	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0003330_22	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0003330_22	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0003330_23	phrog_1233	94.7	8.8e-28	N/A	unknown function
eggNOG-mapper	UHGV-0003330_23	1151292.QEW_4538	114.0	1.66e-30	N/A	N/A
PHROG	UHGV-0003330_25	phrog_36	58.2	2.1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0003330_25	UniRef90_R5MSQ9	137.0	3.21e-39	DNA-directed RNA polymerase specialized sigma subunit sigma24	N/A
eggNOG-mapper	UHGV-0003330_25	1321779.HMPREF1984_01313	72.4	0.000000000000159	N/A	N/A
Pfam	UHGV-0003330_25	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0003330_25	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0003330_25	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0003330_34	phrog_1891	221.5	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003330_34	UniRef90_A0A386PKY6	197.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0003330_34	696281.Desru_1079	171.0	0	HNH endonuclease	N/A
Pfam	UHGV-0003330_34	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0003330_34	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-0003330_35	phrog_2044	72.6	3.7e-21	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0003330_35	796940.HMPREF9628_00162	60.1	0.000000000074	N/A	N/A
structural_annotation	UHGV-0003330_35	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0003330_37	PF02559,MF_01194,TIGR02097	N/A	N/A	N/A	N/A
PHROG	UHGV-0003330_40	phrog_16527	99.0	4e-29	N/A	unknown function
PHROG	UHGV-0003330_41	phrog_1934	140.1	7.49975e-42	N/A	unknown function
UniRef90	UHGV-0003330_41	UniRef90_UPI0005603695	149.0	1.10703e-43	zinc-finger-containing protein	N/A
eggNOG-mapper	UHGV-0003330_41	445972.ANACOL_00149	107.0	8.12e-28	COG NOG19595 non supervised orthologous group	N/A
Pfam	UHGV-0003330_41	PF11672	N/A	N/A	zinc-finger-containing domain	DUF3268
structural_annotation	UHGV-0003330_41	PF11672	N/A	N/A	N/A	N/A
PHROG	UHGV-0003330_43	phrog_2245	79.5	4.8e-23	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-0003330_43	428127.EUBDOL_01514	49.7	0.00000254	N/A	N/A
structural_annotation	UHGV-0003330_43	PF02185	N/A	N/A	N/A	N/A
PHROG	UHGV-0003330_44	phrog_4973	47.0	0.00000000000043	N/A	unknown function
Pfam	UHGV-0003330_44	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0003330_44	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-0003330_45	phrog_72	48.4	0.00000000000013	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0003330_45	428127.EUBDOL_01246	101.0	8.01e-25	N/A	N/A
Pfam	UHGV-0003330_45	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-0003330_45	PF05772	N/A	N/A	N/A	N/A
KOfam	UHGV-0003330_46	K03111	134.8	9.90001e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0003330_46	phrog_44	143.6	1.19951e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003330_46	UniRef90_R5MS63	183.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0003330_46	1347087.CBYO010000020_gene2914	129.0	5.61e-36	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0003330_46	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0003330_46	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0003330_46	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0003330_46	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0003330_46	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0003330_49	phrog_298	56.8	1.9e-16	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003330_49	UniRef90_A0A3D5XTJ3	159.0	0	Cas_Cas4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0003330_49	1122981.AUME01000026_gene554	80.9	0.00000000000000191	YqaJ viral recombinase family	N/A
Pfam	UHGV-0003330_49	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
COG	UHGV-0003330_49	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0003330_49	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0003330_50	phrog_6244	43.3	0.0000000000082	N/A	unknown function
structural_annotation	UHGV-0003330_50	PF05565	N/A	N/A	N/A	N/A
UniRef90	UHGV-0003330_53	UniRef90_A0A6A8SK39	59.3	0.0000000349	Inhibitor_G39P domain-containing protein	N/A
PHROG	UHGV-0003330_54	phrog_428	110.9	1.7e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003330_54	UniRef90_UPI000B1808B0	108.0	3.64e-25	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0003330_54	469604.HMPREF0946_00822	110.0	1.9e-26	Transcriptional regulator	N/A
Pfam	UHGV-0003330_54	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0003330_54	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0003330_54	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0003330_54	COG1802	N/A	N/A	DNA-binding transcriptional regulator, GntR family	N/A
structural_annotation	UHGV-0003330_54	PF09524,PF19808,TIGR02220	N/A	N/A	N/A	N/A
UniRef90	UHGV-0003330_58	UniRef90_Q6R856	92.0	7.54e-23	77ORF077	N/A
eggNOG-mapper	UHGV-0003330_58	663241.C9E2M2_9CAUD	82.0	1.01e-19	N/A	N/A
Pfam	UHGV-0003330_58	PF05339	N/A	N/A	N/A	DUF739
structural_annotation	UHGV-0003330_58	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0003330_59	K22300	45.0	0.0000000000022	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0003330_59	phrog_2967	56.2	6.9e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0003330_59	UniRef90_A0A564SCK3	116.0	2.75e-30	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0003330_59	1121947.AUHK01000002_gene902	101.0	1.11e-24	Peptidase S24-like	N/A
Pfam	UHGV-0003330_59	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0003330_59	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0003330_59	PF01381,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0003330_60	K06400	297.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0003330_60	phrog_95	305.2	0	integrase	integration and excision
UniRef90	UHGV-0003330_60	UniRef90_UPI001E58B186	298.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0003330_60	411470.RUMGNA_02175	296.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0003330_60	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0003330_60	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0003330_60	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0003330_60	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0003330_60	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0003330	Yes	32,460	28	88	1