vOTU vOTU-142471

vOTU: vOTU-142471

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-142471
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Pygmaiobacter → Pygmaiobacter massiliensis
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-07212 → vGENUS-19618 → vOTU-142471
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Pygmaiobacter → Pygmaiobacter massiliensis
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0073190
Biosample ID	SAMEA2580161
Genome length (bp)	26,463 bps
CheckV completeness	70.00% (Medium-quality)
CDS count	41
CDS density	91.02%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage		Total connections		Host agreement
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Pygmaiobacter → Pygmaiobacter massiliensis	Total connections	4	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 70)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0073190_1	665956.HMPREF1032_02945	61.6	0.0000000000775	N/A	N/A
PHROG	UHGV-0073190_2	phrog_3266	133.1	1.1e-39	tail completion	connector
UniRef90	UHGV-0073190_2	UniRef90_UPI000F637EFF	103.0	2.43e-25	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0073190_2	33035.JPJF01000033_gene2269	89.7	1.44e-20	N/A	N/A
structural_annotation	UHGV-0073190_2	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0073190_3	phrog_556	96.2	2.4e-28	minor head protein	head and packaging
UniRef90	UHGV-0073190_3	UniRef90_UPI000C7BB2F0	285.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0073190_3	718252.FP2_06630	114.0	9.61e-31	Minor capsid protein	N/A
Pfam	UHGV-0073190_3	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0073190_3	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0073190_4	phrog_3366	81.7	9.1e-24	N/A	unknown function
Pfam	UHGV-0073190_4	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0073190_4	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0073190_5	phrog_541	60.4	3.3e-17	head-tail adaptor	connector
PHROG	UHGV-0073190_7	phrog_212	241.2	0	major head protein	head and packaging
UniRef90	UHGV-0073190_7	UniRef90_UPI000C7D9661	593.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0073190_7	1122918.KB907248_gene4499	263.0	0	N/A	N/A
structural_annotation	UHGV-0073190_7	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0073190_8	phrog_194	69.0	9.7e-20	head scaffolding protein	head and packaging
UniRef90	UHGV-0073190_8	UniRef90_UPI0015E07D35	315.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0073190_8	748224.HMPREF9436_03336	142.0	1.23999e-40	Phage minor structural protein GP20	N/A
Pfam	UHGV-0073190_8	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0073190_8	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0073190_9	phrog_15041	44.3	0.0000000000022	N/A	unknown function
structural_annotation	UHGV-0073190_9	PF10827	N/A	N/A	N/A	N/A
PHROG	UHGV-0073190_10	phrog_581	356.4	0	minor head protein	head and packaging
UniRef90	UHGV-0073190_10	UniRef90_UPI000C7C1FAA	952.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0073190_10	718252.FP2_06690	496.0	0	N/A	N/A
Pfam	UHGV-0073190_10	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0073190_10	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0073190_10	PF06152,PF12106	N/A	N/A	N/A	N/A
PHROG	UHGV-0073190_11	phrog_533	262.1	0	portal protein	head and packaging
UniRef90	UHGV-0073190_11	UniRef90_A0A7G9WF85	442.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0073190_11	718252.FP2_06700	467.0	0	N/A	N/A
structural_annotation	UHGV-0073190_11	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0073190_12	K06909	79.5	5.3e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0073190_12	phrog_2	104.7	1.6e-30	terminase large subunit	head and packaging
UniRef90	UHGV-0073190_12	UniRef90_UPI000C79721B	854.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0073190_12	1449050.JNLE01000003_gene3895	402.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0073190_12	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0073190_12	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0073190_12	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0073190_13	phrog_2412	92.9	3.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0073190_13	742738.HMPREF9460_02504	119.0	6.13e-33	N/A	N/A
KOfam	UHGV-0073190_14	K07458	180.7	0	vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]	N/A
PHROG	UHGV-0073190_14	phrog_13076	141.9	2.29953e-42	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0073190_14	UniRef90_UPI000551808A	221.0	0	very short patch repair endonuclease	N/A
eggNOG-mapper	UHGV-0073190_14	706434.HMPREF9429_01135	191.0	0	May nick specific sequences that contain T G mispairs resulting from m5C-deamination	N/A
PADLOC	UHGV-0073190_14	NEase_II_00006	81.0	3.3e-23	Type II nicking endonuclease	RM
Pfam	UHGV-0073190_14	PF03852	N/A	N/A	DNA mismatch endonuclease Vsr	Vsr
NCBIFam	UHGV-0073190_14	TIGR00632.1	N/A	N/A	DNA mismatch endonuclease Vsr	N/A
COG	UHGV-0073190_14	COG3727	N/A	N/A	G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein	N/A
structural_annotation	UHGV-0073190_14	PF04480,TIGR00632,COG3727	N/A	N/A	N/A	N/A
PHROG	UHGV-0073190_15	phrog_36646	130.0	6.6e-40	restriction endonuclease II	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0073190_15	UniRef90_A0A844IVK9	633.0	0	Restriction endonuclease	N/A
eggNOG-mapper	UHGV-0073190_15	1105031.HMPREF1141_1954	605.0	0	EcoRII C terminal	N/A
PADLOC	UHGV-0073190_15	REase_II_00069	193.0	0	Type II restriction enzyme	RM
Pfam	UHGV-0073190_15	PF09217	N/A	N/A	Restriction endonuclease EcoRII, N-terminal	EcoRII-N
Pfam	UHGV-0073190_15	PF09019	N/A	N/A	EcoRII C terminal	EcoRII-C
structural_annotation	UHGV-0073190_15	PF09019,PF09217	N/A	N/A	N/A	N/A
KOfam	UHGV-0073190_16	K00558	290.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0073190_16	phrog_116	270.9	0	DNA methyltransferase	other
UniRef90	UHGV-0073190_16	UniRef90_A0A844J3P0	661.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0073190_16	1105031.HMPREF1141_1953	625.0	0	PFAM C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0073190_16	MTase_II_00147	488.0	0	Type II methyltransferase	RM
Pfam	UHGV-0073190_16	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0073190_16	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0073190_16	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0073190_16	PF00145,PF01381,MF_00786,MF_00535,TIGR00675,NF000090,COG0270,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0073190_17	phrog_11237	72.3	7.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0073190_17	610130.Closa_0738	89.7	3.32e-21	N/A	N/A
KOfam	UHGV-0073190_18	K02315	129.5	3.3e-38	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0073190_18	phrog_50	120.3	2e-35	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0073190_18	UniRef90_UPI000C7A0A0E	506.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0073190_18	445972.ANACOL_01829	193.0	0	N/A	N/A
Pfam	UHGV-0073190_18	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0073190_18	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0073190_18	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0073190_19	phrog_8489	248.1	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0073190_19	UniRef90_A0A6A4UXR4	194.0	0	Phage replication initiation	N/A
eggNOG-mapper	UHGV-0073190_19	1139219.I569_00860	187.0	0	DnaD domain protein	N/A
COG	UHGV-0073190_19	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0073190_19	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0073190_20	K03111	133.3	3.2e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0073190_20	phrog_44	139.8	1.79997e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0073190_20	UniRef90_UPI000C7C4D36	297.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0073190_20	665956.HMPREF1032_00430	174.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0073190_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0073190_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0073190_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0073190_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0073190_20	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0073190_21	phrog_398	196.1	0	N/A	unknown function
UniRef90	UHGV-0073190_21	UniRef90_UPI000C7B20DA	440.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0073190_21	1485543.JMME01000021_gene802	180.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0073190_21	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0073190_21	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0073190_22	phrog_561	155.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0073190_22	UniRef90_A0A174RC35	189.0	0	RecT family	N/A
eggNOG-mapper	UHGV-0073190_22	557598.LHK_01792	187.0	0	N/A	N/A
structural_annotation	UHGV-0073190_22	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0073190_23	phrog_298	83.3	1.2e-24	exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0073190_23	1218075.BAYA01000003_gene606	79.3	0.00000000000000119	N/A	N/A
structural_annotation	UHGV-0073190_23	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0073190_26	phrog_25245	146.8	7.84727e-44	N/A	unknown function
UniRef90	UHGV-0073190_26	UniRef90_UPI000C7C4A83	334.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-0073190_26	657322.FPR_26620	142.0	6.65e-41	3D domain	N/A
Pfam	UHGV-0073190_26	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0073190_26	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0073190_26	PF06725,NF040677,COG3584	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0073190_27	693746.OBV_43260	62.0	0.00000000000534	N/A	N/A
structural_annotation	UHGV-0073190_27	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0073190_28	K07741	152.3	7.00649e-45	antB; anti-repressor protein	N/A
PHROG	UHGV-0073190_28	phrog_5817	129.4	3.5e-38	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0073190_28	UniRef90_UPI001A9A63C2	329.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0073190_28	1414720.CBYM010000005_gene1349	295.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0073190_28	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0073190_28	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0073190_28	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0073190_28	PF08346,PF03374,TIGR02681,COG3561,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-0073190_31	phrog_8	44.2	0.0000000000047	transcriptional regulator	transcription regulation
UniRef90	UHGV-0073190_31	UniRef90_A0A328UFC2	106.0	5.02e-29	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0073190_31	1121344.JHZO01000003_gene989	62.0	0.0000000000142	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0073190_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0073190_31	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0073190_31	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0073190_32	K22300	50.0	0.000000000000064	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0073190_32	phrog_8	64.1	3.7e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0073190_32	UniRef90_A0A372V3Y4	107.0	8.31e-28	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0073190_32	1304866.K413DRAFT_0834	71.2	0.000000000000019	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0073190_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0073190_32	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0073190_32	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0073190_33	UniRef90_UPI001C3AA0FC	115.0	1.98e-30	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0073190_33	1232443.BAIA02000007_gene673	79.0	8.32e-17	IrrE N-terminal-like domain	N/A
COG	UHGV-0073190_33	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0073190_33	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0073190_34	K07052	68.7	9e-20	K07052; CAAX protease family protein	N/A
UniRef90	UHGV-0073190_34	UniRef90_UPI000C7C3468	488.0	0	CPBP family intramembrane metalloprotease	N/A
eggNOG-mapper	UHGV-0073190_34	908340.HMPREF9406_3146	58.5	0.00000057	N/A	N/A
Pfam	UHGV-0073190_34	PF02517	N/A	N/A	Type II CAAX prenyl endopeptidase Rce1-like	Rce1-like
COG	UHGV-0073190_34	COG1266	N/A	N/A	Membrane protease YdiL, CAAX protease family	N/A
PHROG	UHGV-0073190_35	phrog_7115	142.3	1.69978e-42	N/A	unknown function
UniRef90	UHGV-0073190_35	UniRef90_UPI000C7A2719	251.0	0	PH domain-containing protein	N/A
eggNOG-mapper	UHGV-0073190_35	1410668.JNKC01000008_gene2722	202.0	0	Bacterial PH domain	N/A
Pfam	UHGV-0073190_35	PF08000	N/A	N/A	Bacterial PH domain	bPH_1
structural_annotation	UHGV-0073190_35	PF08000,MF_00437	N/A	N/A	N/A	N/A
PHROG	UHGV-0073190_36	phrog_7395	153.5	0	N/A	unknown function
UniRef90	UHGV-0073190_36	UniRef90_UPI0009F594E1	157.0	0	N/A	N/A
eggNOG-mapper	UHGV-0073190_36	1168067.JAGP01000001_gene1216	131.0	3.42e-37	N/A	N/A
Pfam	UHGV-0073190_36	PF14015	N/A	N/A	N/A	DUF4231
NCBIFam	UHGV-0073190_36	NF033634.1	N/A	N/A	SLATT domain-containing protein	N/A
structural_annotation	UHGV-0073190_36	PF14015,NF033634	N/A	N/A	N/A	N/A
PHROG	UHGV-0073190_37	phrog_419	67.8	2.3e-20	N/A	unknown function
UniRef90	UHGV-0073190_37	UniRef90_A0A0U5JUI8	89.7	2.09e-22	N/A	N/A
eggNOG-mapper	UHGV-0073190_37	1401067.HMPREF0872_03940	84.7	3.04e-21	N/A	N/A
structural_annotation	UHGV-0073190_37	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0073190_38	phrog_6988	133.4	8.8e-40	N/A	unknown function
UniRef90	UHGV-0073190_38	UniRef90_UPI0008DAF6BB	208.0	0	TIR domain-containing protein	N/A
eggNOG-mapper	UHGV-0073190_38	1288298.rosmuc_04180	145.0	5.29691e-43	N/A	N/A
PADLOC	UHGV-0073190_38	ThsB1_00002	48.3	0.00000000000026	TIR-like	Thoeris
Pfam	UHGV-0073190_38	PF08937	N/A	N/A	Thoeris protein ThsB, TIR-like domain	ThsB_TIR
structural_annotation	UHGV-0073190_38	PF08937,MF_03036,TIGR03646,COG0758	N/A	N/A	N/A	N/A
KOfam	UHGV-0073190_39	K14059	108.9	7.5e-32	int; integrase	N/A
PHROG	UHGV-0073190_39	phrog_1	119.6	2e-35	integrase	integration and excision
UniRef90	UHGV-0073190_39	UniRef90_UPI0011AF8E34	845.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0073190_39	693746.OBV_41260	210.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0073190_39	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0073190_39	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0073190_39	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0073190_40	UniRef90_UPI001EEF2191	277.0	0	tetratricopeptide repeat protein	N/A
eggNOG-mapper	UHGV-0073190_40	411490.ANACAC_03819	213.0	0	Tetratricopeptide repeat	N/A
PADLOC	UHGV-0073190_40	icity0107	175.4	0	TPR repeats containing protein fused to cold shock-like domain (OB-fold)	CRISPR-CAS
Pfam	UHGV-0073190_40	PF13424	N/A	N/A	Tetratricopeptide repeat	TPR_12
Pfam	UHGV-0073190_40	PF13428	N/A	N/A	Tetratricopeptide repeat	TPR_14
COG	UHGV-0073190_40	COG0457	N/A	N/A	Tetratricopeptide (TPR) repeat	N/A
KOfam	UHGV-0073190_41	K06993	130.4	1.6e-38	K06993; ribonuclease H-related protein	N/A
UniRef90	UHGV-0073190_41	UniRef90_Q892E9	142.0	1.31e-40	Ribonuclease HI	N/A
eggNOG-mapper	UHGV-0073190_41	592027.CLG_B0695	129.0	1.22e-33	Caulimovirus viroplasmin	N/A
Pfam	UHGV-0073190_41	PF01693	N/A	N/A	Caulimovirus viroplasmin	Cauli_VI
COG	UHGV-0073190_41	COG0328	N/A	N/A	Ribonuclease HI	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0073190	Yes	26,463	45	70	1