vOTU vOTU-142491

vOTU: vOTU-142491

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-142491
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminiclostridium_E → Ruminiclostridium_E siraeum
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-00011 → vOTU-142491
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → QALW01 → QALW01 → QALW01 sp900552055
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0204562
Biosample ID	N/A
Genome length (bp)	28,109 bps
CheckV completeness	51.31% (Medium-quality)
CDS count	28
CDS density	89.45%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → QALW01 → QALW01 → QALW01 sp900552055	Total connections	6	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminiclostridium_E → Ruminiclostridium_E siraeum	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 51.31)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0204562_1	UniRef90_A0A564UH10	73.2	0.00000000000000396	N/A	N/A
eggNOG-mapper	UHGV-0204562_1	588581.Cpap_3235	82.0	2.26e-17	N/A	N/A
Pfam	UHGV-0204562_1	PF18310	N/A	N/A	N/A	DUF5605
COG	UHGV-0204562_1	COG5512	N/A	N/A	Predicted nucleic acid-binding protein, contains Zn-ribbon domain (includes truncated derivatives)	N/A
UniRef90	UHGV-0204562_3	UniRef90_A0A1I1ZCH4	412.0	0	SWIM-type domain-containing protein	N/A
COG	UHGV-0204562_3	COG4715	N/A	N/A	N/A	N/A
KOfam	UHGV-0204562_4	K06400	383.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0204562_4	phrog_95	452.7	0	integrase	integration and excision
UniRef90	UHGV-0204562_4	UniRef90_UPI000987B26F	691.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0204562_4	498761.HM1_2862	369.0	0	resolvase	N/A
Pfam	UHGV-0204562_4	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0204562_4	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0204562_4	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0204562_4	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0204562_4	PF00239,PF07508,PF18822,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0204562_5	K06400	332.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0204562_5	phrog_95	373.4	0	integrase	integration and excision
UniRef90	UHGV-0204562_5	UniRef90_UPI000984C2A9	600.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0204562_5	439292.Bsel_2980	259.0	0	PFAM Resolvase domain	N/A
Pfam	UHGV-0204562_5	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0204562_5	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0204562_5	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0204562_5	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0204562_5	PF07508,PF00239,PF10944,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0204562_7	K01447	75.5	8.8e-22	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0204562_7	phrog_5182	246.1	0	endolysin	lysis
UniRef90	UHGV-0204562_7	UniRef90_UPI00058DCB70	459.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0204562_7	1216932.CM240_0631	418.0	0	Ami_2	N/A
Pfam	UHGV-0204562_7	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0204562_7	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0204562_7	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0204562_7	PF01510,PF01476,MF_02014,MF_04111,NF008758,TIGR02899,COG5632,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0204562_8	phrog_21233	106.7	9e-32	N/A	unknown function
UniRef90	UHGV-0204562_8	UniRef90_A0A1E3C302	252.0	0	Holin	N/A
eggNOG-mapper	UHGV-0204562_8	1410624.JNKK01000017_gene1990	207.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0204562_8	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0204562_8	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0204562_8	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0204562_8	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204562_9	UniRef90_A0A3E2B3T2	198.0	0	N/A	N/A
PHROG	UHGV-0204562_10	phrog_372	344.2	0	tail protein	tail
UniRef90	UHGV-0204562_10	UniRef90_R6I2A5	1142.0	0	Putative minor structural protein	N/A
eggNOG-mapper	UHGV-0204562_10	1408428.JNJP01000079_gene3365	92.8	1.68e-16	Phage tail-collar fibre protein	N/A
Pfam	UHGV-0204562_10	PF05895	N/A	N/A	N/A	DUF859
Pfam	UHGV-0204562_10	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2
COG	UHGV-0204562_10	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0204562_10	PF05895,MF_04116,NF010681,COG3401	N/A	N/A	N/A	N/A
PHROG	UHGV-0204562_11	phrog_2929	66.9	2.6e-21	tail fiber protein	tail
UniRef90	UHGV-0204562_11	UniRef90_R6C4A8	406.0	0	Structural component of the tail fiber	N/A
COG	UHGV-0204562_11	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0204562_11	PF04862,NF033675,COG4935	N/A	N/A	N/A	N/A
PHROG	UHGV-0204562_12	phrog_3267	337.5	0	tail protein	tail
UniRef90	UHGV-0204562_12	UniRef90_R9C033	409.0	0	YkqB	N/A
eggNOG-mapper	UHGV-0204562_12	207656.S6BUV4_9CAUD	313.0	0	N/A	N/A
structural_annotation	UHGV-0204562_12	PF02010,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
PHROG	UHGV-0204562_13	phrog_1067	420.8	0	minor head protein	head and packaging
UniRef90	UHGV-0204562_13	UniRef90_UPI001F477F79	932.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0204562_13	1160721.RBI_I01574	375.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0204562_13	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0204562_13	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0204562_13	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0204562_13	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0204562_13	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0204562_14	phrog_33	108.9	6.6e-32	distal tail protein Dit	tail
UniRef90	UHGV-0204562_14	UniRef90_A0A224AT67	302.0	0	Phage tail component	N/A
eggNOG-mapper	UHGV-0204562_14	1444306.JFZC01000034_gene2623	149.0	1.12006e-41	tail component	N/A
COG	UHGV-0204562_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0204562_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0204562_15	phrog_1272	286.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0204562_15	UniRef90_R9M1L9	479.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0204562_15	665950.HMPREF1025_02680	485.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0204562_15	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0204562_15	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0204562_15	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0204562_16	phrog_2115	75.2	7.9e-22	tail protein	tail
eggNOG-mapper	UHGV-0204562_16	1216932.CM240_0624	200.0	0	N/A	N/A
structural_annotation	UHGV-0204562_16	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0204562_17	phrog_88	181.0	0	major tail protein	tail
UniRef90	UHGV-0204562_17	UniRef90_W6RU13	337.0	0	Phi13 family phage major tail protein	N/A
eggNOG-mapper	UHGV-0204562_17	1216932.CM240_0623	337.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0204562_17	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0204562_17	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0204562_17	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0204562_18	phrog_78	51.2	0.000000000000024	tail terminator	connector
eggNOG-mapper	UHGV-0204562_18	1216932.CM240_0622	167.0	0	High confidence in function and specificity	N/A
structural_annotation	UHGV-0204562_18	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0204562_19	phrog_5	59.2	1.1e-16	tail completion or Neck1 protein	connector
UniRef90	UHGV-0204562_19	UniRef90_A0A4R7LBC7	198.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0204562_19	498761.HM1_2877	197.0	0	TIGRFAM phage protein, HK97 gp10 family	N/A
Pfam	UHGV-0204562_19	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0204562_19	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0204562_19	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0204562_20	phrog_25	43.4	0.0000000000053	head closure Hc1	connector
UniRef90	UHGV-0204562_20	UniRef90_A0A316QH40	182.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0204562_20	1120978.KB894083_gene903	165.0	0	Phage head-tail joining protein	N/A
Pfam	UHGV-0204562_20	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
COG	UHGV-0204562_20	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0204562_20	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204562_21	UniRef90_UPI0005D34C9D	486.0	0	SIR2 family protein	N/A
eggNOG-mapper	UHGV-0204562_21	796942.HMPREF9623_00127	446.0	0	N/A	N/A
Pfam	UHGV-0204562_21	PF13289	N/A	N/A	SIR2-like domain	SIR2_2
eggNOG-mapper	UHGV-0204562_23	877414.ATWA01000033_gene1325	68.6	0.0000000000000563	N/A	N/A
Pfam	UHGV-0204562_23	PF20648	N/A	N/A	N/A	DUF6809
structural_annotation	UHGV-0204562_23	PF20648	N/A	N/A	N/A	N/A
UniRef90	UHGV-0204562_24	UniRef90_D4JUW1	135.0	2.28e-40	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-0204562_24	693746.OBV_30680	112.0	7.81e-32	Helix-turn-helix domain	N/A
Pfam	UHGV-0204562_24	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0204562_24	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0204562_24	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0204562_24	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0204562_25	K02086	41.7	0.000000000014	dnaD; DNA replication protein	N/A
UniRef90	UHGV-0204562_25	UniRef90_D4MN66	251.0	0	Sugar-specific transcriptional regulator TrmB	N/A
eggNOG-mapper	UHGV-0204562_25	693746.OBV_30670	165.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0204562_25	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
structural_annotation	UHGV-0204562_25	PF03428,MF_01909,NF041141,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-0204562_26	K14059	303.9	0	int; integrase	N/A
PHROG	UHGV-0204562_26	phrog_1	236.3	0	integrase	integration and excision
UniRef90	UHGV-0204562_26	UniRef90_D4JUW2	766.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0204562_26	1226322.HMPREF1545_01361	496.0	0	N/A	N/A
Pfam	UHGV-0204562_26	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0204562_26	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0204562_26	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0204562_26	PF00589,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0204562_27	K14059	340.5	0	int; integrase	N/A
PHROG	UHGV-0204562_27	phrog_1	241.3	0	integrase	integration and excision
UniRef90	UHGV-0204562_27	UniRef90_D4JUW3	899.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0204562_27	742738.HMPREF9460_03536	583.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0204562_27	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0204562_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0204562_27	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0204562_27	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0204562_28	1504823.CCMM01000011_gene1428	179.0	0	N/A	N/A
structural_annotation	UHGV-0204562_28	PF21297,NF041116	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0204562	Yes	28,109	49	51	1