vOTU vOTU-142549

vOTU: vOTU-142549

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-142549
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00026 → vSUBFAM-04171 → vOTU-142549
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Anaerotignaceae → Metalachnospira → Metalachnospira sp900553995
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0013128
Biosample ID	N/A
Genome length (bp)	26,109 bps
CheckV completeness	74.15% (Medium-quality)
CDS count	44
CDS density	93.37%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage		Total connections		Host agreement
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Anaerotignaceae → Metalachnospira → Metalachnospira sp900553995	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 74.15)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0013128_1	K14059	158.3	0	int; integrase	N/A
PHROG	UHGV-0013128_1	phrog_1	161.7	0	integrase	integration and excision
UniRef90	UHGV-0013128_1	UniRef90_UPI001C109D33	664.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0013128_1	1238184.CM001792_gene62	296.0	0	Phage integrase family	N/A
Pfam	UHGV-0013128_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0013128_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0013128_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0013128_2	phrog_888	206.2	0	N/A	unknown function
UniRef90	UHGV-0013128_2	UniRef90_A0A6N7SSL1	193.0	0	N/A	N/A
eggNOG-mapper	UHGV-0013128_2	1292035.H476_2311	149.0	2.68993e-41	Short C-terminal domain	N/A
Pfam	UHGV-0013128_2	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-0013128_2	PF15947,PF14471	N/A	N/A	N/A	N/A
KOfam	UHGV-0013128_3	K18830	65.4	1.2e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0013128_3	phrog_4	53.0	0.0000000000000078	transcriptional repressor	transcription regulation
UniRef90	UHGV-0013128_3	UniRef90_UPI001C1042A0	248.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0013128_3	903814.ELI_1263	95.9	7.83e-24	Helix-turn-helix domain	N/A
Pfam	UHGV-0013128_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0013128_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0013128_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013128_5	PF20455	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013128_6	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0013128_7	phrog_2113	52.0	0.0000000000000076	N/A	unknown function
UniRef90	UHGV-0013128_7	UniRef90_UPI000C85DE39	62.0	0.000000000654	HTH domain-containing protein	N/A
structural_annotation	UHGV-0013128_7	PF21715,TIGR04176,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-0013128_8	phrog_3777	72.5	2.6e-21	N/A	unknown function
UniRef90	UHGV-0013128_8	UniRef90_UPI00195A562E	69.3	0.000000000000382	N/A	N/A
eggNOG-mapper	UHGV-0013128_8	1050201.KB913034_gene614	59.7	0.00000000139	N/A	N/A
Pfam	UHGV-0013128_8	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-0013128_8	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-0013128_8	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-0013128_12	phrog_24518	100.3	1.6e-29	N/A	unknown function
eggNOG-mapper	UHGV-0013128_12	1519439.JPJG01000077_gene922	103.0	2.11e-24	N/A	N/A
PHROG	UHGV-0013128_15	phrog_3584	163.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013128_15	UniRef90_I2E8X7	100.0	3.85e-22	Gp31	N/A
eggNOG-mapper	UHGV-0013128_15	632245.CLP_2642	103.0	1.7e-23	N/A	N/A
structural_annotation	UHGV-0013128_15	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0013128_17	K07451	40.3	0.000000000048	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0013128_17	phrog_144	70.1	3.3e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013128_17	UniRef90_UPI001C10659D	269.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0013128_17	1414720.CBYM010000002_gene577	103.0	1.52e-26	HNH nucleases	N/A
Pfam	UHGV-0013128_17	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-0013128_18	phrog_83	75.4	7e-22	terminase small subunit	head and packaging
UniRef90	UHGV-0013128_18	UniRef90_UPI001C0F8F1C	287.0	0	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0013128_18	903814.ELI_1295	109.0	2.05e-28	phage terminase small subunit	N/A
Pfam	UHGV-0013128_18	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0013128_18	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0013128_18	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0013128_19	phrog_9	283.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0013128_19	UniRef90_UPI001C110A49	1070.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0013128_19	1399942.U3PBG5_9CAUD	637.0	0	Phage Terminase	N/A
Pfam	UHGV-0013128_19	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0013128_19	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
structural_annotation	UHGV-0013128_19	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0013128_20	phrog_12	228.3	0	portal protein	head and packaging
UniRef90	UHGV-0013128_20	UniRef90_UPI001C0FDDEA	780.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0013128_20	796940.HMPREF9628_00146	265.0	0	Portal protein	N/A
Pfam	UHGV-0013128_20	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0013128_20	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0013128_20	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0013128_20	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0013128_21	K06904	92.3	6.6e-27	N/A	N/A
PHROG	UHGV-0013128_21	phrog_80	114.4	1.3e-33	head maturation protease	head and packaging
UniRef90	UHGV-0013128_21	UniRef90_UPI001C1087C6	392.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0013128_21	1196031.ALEG01000039_gene1815	153.0	3.22299e-44	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0013128_21	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0013128_21	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0013128_21	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0013128_21	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0013128_22	phrog_10	204.0	0	major head protein	head and packaging
UniRef90	UHGV-0013128_22	UniRef90_UPI001C0FC783	697.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0013128_22	1414720.CBYM010000001_gene699	297.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0013128_22	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0013128_22	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0013128_22	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0013128_22	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013128_23	UniRef90_UPI001C10E117	186.0	0	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0013128_23	1285586.H131_21297	88.6	9.49e-22	Phage gp6-like head-tail connector protein	N/A
NCBIFam	UHGV-0013128_23	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0013128_23	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0013128_24	phrog_25	59.4	5.8e-17	head closure Hc1	connector
UniRef90	UHGV-0013128_24	UniRef90_UPI001C122719	229.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0013128_24	290402.Cbei_0911	102.0	8.59e-27	Phage head-tail adaptor	N/A
Pfam	UHGV-0013128_24	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0013128_24	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0013128_24	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0013128_24	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0013128_25	1095747.HMPREF1049_2007	78.2	1.61e-16	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-0013128_25	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0013128_26	phrog_525	44.4	0.0000000000027	N/A	unknown function
Pfam	UHGV-0013128_26	PF20765	N/A	N/A	N/A	DUF6838
structural_annotation	UHGV-0013128_26	PF20765,TIGR01633,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0013128_27	phrog_1480	369.8	0	tail sheath	tail
UniRef90	UHGV-0013128_27	UniRef90_UPI001C106E57	697.0	0	phage tail sheath subtilisin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0013128_27	1120998.AUFC01000013_gene2945	261.0	0	Phage tail sheath C-terminal domain	N/A
Pfam	UHGV-0013128_27	PF04984	N/A	N/A	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
Pfam	UHGV-0013128_27	PF17482	N/A	N/A	Phage tail sheath C-terminal domain	Phage_sheath_1C
structural_annotation	UHGV-0013128_27	PF10758,COG3497	N/A	N/A	N/A	N/A
PHROG	UHGV-0013128_28	phrog_365	152.4	1.4013e-45	tail protein	tail
UniRef90	UHGV-0013128_28	UniRef90_UPI001C101F78	286.0	0	phage tail tube protein	N/A
eggNOG-mapper	UHGV-0013128_28	393480.FNP_1694	178.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0013128_28	PF09393	N/A	N/A	Phage tail tube protein	DUF2001
structural_annotation	UHGV-0013128_28	PF09393,TIGR02241,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0013128_29	phrog_4976	61.4	1.6e-17	tail assembly chaperone	tail
UniRef90	UHGV-0013128_29	UniRef90_UPI001875BA1A	111.0	7.19e-29	phage portal protein	N/A
eggNOG-mapper	UHGV-0013128_29	469617.FUAG_00844	68.9	0.0000000000005	N/A	N/A
structural_annotation	UHGV-0013128_29	PF08890,TIGR01674	N/A	N/A	N/A	N/A
PHROG	UHGV-0013128_30	phrog_973	72.0	3.3e-24	tail length tape measure protein	tail
UniRef90	UHGV-0013128_30	UniRef90_A0A1T4YDD5	277.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0013128_30	632245.CLP_2908	250.0	0	phage tail tape measure protein	N/A
COG	UHGV-0013128_30	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0013128_30	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0013128_31	phrog_23201	94.3	1.2e-27	N/A	unknown function
UniRef90	UHGV-0013128_31	UniRef90_A0A6N7XM83	120.0	1.47e-32	Phage portal protein	N/A
eggNOG-mapper	UHGV-0013128_31	1203606.HMPREF1526_01349	102.0	6.05e-26	LysM domain	N/A
COG	UHGV-0013128_31	COG1652	N/A	N/A	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	N/A
structural_annotation	UHGV-0013128_31	PF19266,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0013128_32	phrog_400	191.4	0	tail protein	tail
UniRef90	UHGV-0013128_32	UniRef90_A0A3E2XWU2	196.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0013128_32	1203606.HMPREF1526_01350	201.0	0	Late control gene D protein	N/A
COG	UHGV-0013128_32	COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013128_32	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0013128_34	phrog_120	43.2	0.0000000000057	baseplate protein	tail
UniRef90	UHGV-0013128_34	UniRef90_UPI001C11145A	294.0	0	N/A	N/A
eggNOG-mapper	UHGV-0013128_34	1203606.HMPREF1526_01352	80.5	3.5e-17	N/A	N/A
Pfam	UHGV-0013128_34	PF10934	N/A	N/A	N/A	DUF2634
COG	UHGV-0013128_34	COG3628	N/A	N/A	Phage baseplate assembly protein W	N/A
structural_annotation	UHGV-0013128_34	PF10934,MF_02010,NF010728,COG4381	N/A	N/A	N/A	N/A
PHROG	UHGV-0013128_35	phrog_6	196.1	0	baseplate protein	tail
UniRef90	UHGV-0013128_35	UniRef90_UPI001C10C4B7	651.0	0	baseplate J/gp47 family protein	N/A
eggNOG-mapper	UHGV-0013128_35	469616.FMAG_00547	274.0	0	Baseplate J-like protein	N/A
Pfam	UHGV-0013128_35	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-0013128_35	COG3299	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013128_35	PF04865,PF21379,MF_04102,TIGR02243,COG3299	N/A	N/A	N/A	N/A
PHROG	UHGV-0013128_36	phrog_521	83.5	2e-24	tail protein	tail
UniRef90	UHGV-0013128_36	UniRef90_UPI001C107A4D	314.0	0	N/A	N/A
eggNOG-mapper	UHGV-0013128_36	596329.HMPREF0631_1390	78.6	0.00000000000000119	N/A	N/A
Pfam	UHGV-0013128_36	PF10076	N/A	N/A	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
COG	UHGV-0013128_36	COG3778	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013128_36	PF10076,TIGR02242,COG3778	N/A	N/A	N/A	N/A
PHROG	UHGV-0013128_37	phrog_863	58.1	2.6e-19	tail fiber assembly	tail
eggNOG-mapper	UHGV-0013128_37	97138.C820_01313	57.4	0.00000221	N/A	N/A
Pfam	UHGV-0013128_37	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
PHROG	UHGV-0013128_41	phrog_9428	41.7	0.000000000016	N/A	unknown function
PHROG	UHGV-0013128_43	phrog_13256	76.7	1.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0013128_43	1160721.RBI_II00522	69.3	0.0000000000000107	N/A	N/A
KOfam	UHGV-0013128_44	K01448	180.1	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0013128_44	phrog_435	151.6	5.60519e-45	endolysin	lysis
UniRef90	UHGV-0013128_44	UniRef90_UPI001C0FB89F	516.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0013128_44	97138.C820_02438	231.0	0	Ami_3	N/A
Pfam	UHGV-0013128_44	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0013128_44	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0013128_44	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0013128	Yes	26,109	42	74	1