vOTU vOTU-142573

vOTU: vOTU-142573

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-142573
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-07465 → vOTU-142573
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0022425
Biosample ID	SAMEA4766010
Genome length (bp)	37,105 bps
CheckV completeness	88.16% (Medium-quality)
CDS count	55
CDS density	89.25%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	25	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter sp900548765	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.16)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0022425_1	K14059	152.6	4.2039e-45	int; integrase	N/A
PHROG	UHGV-0022425_1	phrog_1	142.7	3.00018e-42	integrase	integration and excision
UniRef90	UHGV-0022425_1	UniRef90_A0A3R6FU66	299.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0022425_1	1321782.HMPREF1986_00315	201.0	0	Phage integrase family	N/A
Pfam	UHGV-0022425_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0022425_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0022425_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0022425_1	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0022425_2	phrog_87	60.8	1.6e-17	metallo-protease	other
UniRef90	UHGV-0022425_2	UniRef90_A0A7U9QZP4	134.0	1.19e-35	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0022425_2	1235802.C823_04594	89.0	3.97e-19	N/A	N/A
Pfam	UHGV-0022425_2	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0022425_2	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0022425_2	PF06114,NF038139,COG2856	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022425_3	1121333.JMLH01000023_gene2074	55.8	0.000000209	N/A	N/A
KOfam	UHGV-0022425_5	K18830	44.2	0.0000000000038	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-0022425_5	UniRef90_A0A3R5ZU10	199.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0022425_5	748224.HMPREF9436_03379	59.7	0.00000000194	sequence-specific DNA binding	N/A
Pfam	UHGV-0022425_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022425_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0022425_5	PF13744,MF_00535,TIGR03070,COG5606	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022425_6	PF05973,TIGR02683,COG4683	N/A	N/A	N/A	N/A
KOfam	UHGV-0022425_8	K18830	51.6	0.00000000000002	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0022425_8	phrog_8	43.6	0.0000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0022425_8	UniRef90_A0A1Q9J555	123.0	8.11e-34	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0022425_8	887325.HMPREF0381_0352	113.0	9.81e-31	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0022425_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022425_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0022425_8	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0022425_9	K22300	54.0	0.0000000000000038	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0022425_9	phrog_8	50.3	0.000000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-0022425_9	UniRef90_A0A1Q9J555	144.0	2.49992e-42	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0022425_9	97138.C820_01960	122.0	3.77e-34	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0022425_9	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0022425_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0022425_9	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0022425_13	phrog_5765	50.6	0.000000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0022425_13	1095750.HMPREF9970_1008	55.1	0.00000000293	N/A	N/A
NCBIFam	UHGV-0022425_13	NF033495.1	N/A	N/A	BC1881 family protein	N/A
PHROG	UHGV-0022425_17	phrog_3584	119.3	3.1e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022425_17	UniRef90_UPI001D0EB55A	157.0	3.20897e-43	helitron helicase-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0022425_17	483218.BACPEC_01173	199.0	0	N/A	N/A
structural_annotation	UHGV-0022425_17	PF21578	N/A	N/A	N/A	N/A
COG	UHGV-0022425_18	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0022425_19	1232453.BAIF02000010_gene3336	61.2	0.00000000719	N/A	N/A
structural_annotation	UHGV-0022425_19	NF011508	N/A	N/A	N/A	N/A
PHROG	UHGV-0022425_23	phrog_17690	50.9	0.000000000000023	N/A	unknown function
eggNOG-mapper	UHGV-0022425_23	665950.HMPREF1025_02546	48.1	0.0000048	N/A	N/A
PHROG	UHGV-0022425_26	phrog_424	73.0	3.9e-21	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0022425_26	UniRef90_A0A2H4JC51	430.0	0	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	N/A
eggNOG-mapper	UHGV-0022425_26	693746.OBV_43240	523.0	0	N/A	N/A
COG	UHGV-0022425_26	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0022425_26	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0022425_27	K00571	84.9	1e-24	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0022425_27	phrog_16	218.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022425_27	UniRef90_A0A173S745	1483.0	0	Putative methyltransferase	N/A
eggNOG-mapper	UHGV-0022425_27	1298920.KI911353_gene2709	1404.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-0022425_27	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0022425_27	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0022425_27	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0022425_28	K00558	84.8	7.9e-25	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0022425_28	phrog_29443	168.5	0	N/A	unknown function
UniRef90	UHGV-0022425_28	UniRef90_UPI001C2DC3AD	192.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0022425_28	1235800.C819_02255	202.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0022425_28	MTase_II_00020	47.6	0.00000000000035	Type II methyltransferase	RM
Pfam	UHGV-0022425_28	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0022425_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
UniRef90	UHGV-0022425_30	UniRef90_A0A1Q6EU34	76.3	7.2e-17	ABC transporter ATP-binding protein	N/A
KOfam	UHGV-0022425_31	K07474	90.0	4.8e-26	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0022425_31	phrog_2606	295.8	0	terminase small subunit	head and packaging
UniRef90	UHGV-0022425_31	UniRef90_UPI0015702ED4	338.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0022425_31	1304866.K413DRAFT_3033	224.0	0	terminase, small subunit	N/A
Pfam	UHGV-0022425_31	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
Pfam	UHGV-0022425_31	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0022425_31	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0022425_31	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0022425_32	K06909	107.6	1.4e-31	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0022425_32	phrog_2	158.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0022425_32	UniRef90_A0A6L5YJQ3	768.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0022425_32	397290.C810_05187	534.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0022425_32	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0022425_32	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0022425_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0022425_32	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0022425_33	phrog_533	274.0	0	portal protein	head and packaging
UniRef90	UHGV-0022425_33	UniRef90_A0A1C6CDM8	423.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0022425_33	33035.JPJF01000106_gene3135	418.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0022425_33	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0022425_34	phrog_556	75.2	6.5e-22	minor head protein	head and packaging
UniRef90	UHGV-0022425_34	UniRef90_UPI000E4A8F9F	166.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0022425_34	1120746.CCNL01000014_gene2100	58.2	0.00000000637	Minor capsid protein	N/A
Pfam	UHGV-0022425_34	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0022425_34	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0022425_35	phrog_581	227.3	0	minor head protein	head and packaging
UniRef90	UHGV-0022425_35	UniRef90_A0A6L5YIK0	613.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0022425_35	663278.Ethha_0091	168.0	1.70958e-42	N/A	N/A
Pfam	UHGV-0022425_35	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0022425_35	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022425_35	PF06152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022425_36	PF16244	N/A	N/A	N/A	N/A
PHROG	UHGV-0022425_37	phrog_194	56.9	4.8e-16	head scaffolding protein	head and packaging
UniRef90	UHGV-0022425_37	UniRef90_UPI000E538A87	193.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0022425_37	476272.RUMHYD_01775	105.0	2.34e-25	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0022425_37	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0022425_38	phrog_283	218.3	0	major head protein	head and packaging
UniRef90	UHGV-0022425_38	UniRef90_A0A173REC9	493.0	0	p22 coat protein-gene protein 5	N/A
eggNOG-mapper	UHGV-0022425_38	411461.DORFOR_01167	478.0	0	P22 coat protein - gene protein 5	N/A
Pfam	UHGV-0022425_38	PF11651	N/A	N/A	P22 coat protein - gene protein 5	P22_CoatProtein
structural_annotation	UHGV-0022425_38	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0022425_39	phrog_541	107.1	1.1e-31	head-tail adaptor	connector
UniRef90	UHGV-0022425_39	UniRef90_A0A371AQT0	57.0	0.0000000792	N/A	N/A
eggNOG-mapper	UHGV-0022425_39	476272.RUMHYD_01778	79.3	7.43e-17	N/A	N/A
PHROG	UHGV-0022425_40	phrog_3366	119.0	2.8e-35	N/A	unknown function
eggNOG-mapper	UHGV-0022425_40	397290.C810_05228	75.5	0.00000000000000424	N/A	N/A
structural_annotation	UHGV-0022425_40	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0022425_41	phrog_3266	54.9	0.0000000000000013	tail completion	connector
eggNOG-mapper	UHGV-0022425_41	397290.C810_05232	57.0	0.0000000389	N/A	N/A
structural_annotation	UHGV-0022425_41	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0022425_42	phrog_3099	83.3	3.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-0022425_42	1235790.C805_00082	62.8	0.000000000482	N/A	N/A
structural_annotation	UHGV-0022425_42	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0022425_43	phrog_11299	48.4	0.000000000000064	N/A	unknown function
UniRef90	UHGV-0022425_43	UniRef90_A0A412KF72	155.0	1.4013e-45	RNA polymerase subunit sigma	N/A
eggNOG-mapper	UHGV-0022425_43	1235790.C805_00083	69.3	0.000000000000943	N/A	N/A
Pfam	UHGV-0022425_43	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0022425_43	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0022425_44	phrog_706	120.5	1.2e-35	N/A	unknown function
UniRef90	UHGV-0022425_44	UniRef90_C7GBZ7	268.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0022425_44	1235790.C805_00084	152.0	4.06377e-44	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0022425_44	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0022425_44	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0022425_45	phrog_1535	120.1	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0022425_45	1280689.AUJC01000003_gene976	132.0	5.88e-29	phage tail tape measure protein	N/A
COG	UHGV-0022425_45	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0022425_46	phrog_1194	41.2	0.000000000025	N/A	unknown function
eggNOG-mapper	UHGV-0022425_46	1120746.CCNL01000014_gene2106	103.0	7.01e-27	N/A	N/A
structural_annotation	UHGV-0022425_46	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0022425_47	phrog_13879	289.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0022425_47	1120746.CCNL01000014_gene2107	327.0	0	N/A	N/A
structural_annotation	UHGV-0022425_47	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
KOfam	UHGV-0022425_49	K13276	70.4	1.3e-20	bpr; bacillopeptidase F [EC:3.4.21.-]	N/A
PHROG	UHGV-0022425_49	phrog_11157	222.8	0	N/A	unknown function
UniRef90	UHGV-0022425_49	UniRef90_A0A416HMQ3	355.0	0	Big_13 domain-containing protein	N/A
eggNOG-mapper	UHGV-0022425_49	1286171.EAL2_c11220	298.0	0	amine dehydrogenase activity	N/A
Pfam	UHGV-0022425_49	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-0022425_49	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
COG	UHGV-0022425_49	COG3391	N/A	N/A	DNA-binding beta-propeller fold protein YncE	N/A
structural_annotation	UHGV-0022425_49	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0022425_50	phrog_18725	73.1	1.7e-21	N/A	unknown function
structural_annotation	UHGV-0022425_50	PF13754,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0022425_53	phrog_937	42.4	0.000000000013	hemolysin	other
PHROG	UHGV-0022425_54	phrog_443	45.9	0.0000000000014	holin	lysis
UniRef90	UHGV-0022425_54	UniRef90_UPI000C75746C	75.1	2.9e-16	holin	N/A
eggNOG-mapper	UHGV-0022425_54	1235802.C823_05612	72.4	6.11e-16	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0022425_54	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0022425_54	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0022425_55	K01448	97.6	1.5e-28	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0022425_55	phrog_435	161.2	0	endolysin	lysis
UniRef90	UHGV-0022425_55	UniRef90_A0A416INH6	433.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0022425_55	411490.ANACAC_00597	182.0	0	Cell wall hydrolase autolysin	N/A
Pfam	UHGV-0022425_55	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0022425_55	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0022425_55	PF01520,PF01471,MF_00562,TIGR02883,NF038080,COG0860,COG3409	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0022425	Yes	37,105	38	88	1