vOTU vOTU-142744

vOTU: vOTU-142744

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-142744
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-00034 → vOTU-142744
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0100765
Biosample ID	SAMEA3541531
Genome length (bp)	23,625 bps
CheckV completeness	55.83% (Medium-quality)
CDS count	43
CDS density	89.56%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	361	Host agreement	98.61
PHIST-predicted host lineage	Bacteria → Firmicutes_A	Total connections	6	Host agreement	66.67

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 55.83)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0100765_1	phrog_20016	92.8	2.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-0100765_1	1226322.HMPREF1545_00077	92.4	2.89e-23	N/A	N/A
structural_annotation	UHGV-0100765_2	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0100765_4	K14059	141.7	9.10003e-42	int; integrase	N/A
PHROG	UHGV-0100765_4	phrog_1	165.2	0	integrase	integration and excision
UniRef90	UHGV-0100765_4	UniRef90_A0A6N7TNQ4	741.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0100765_4	411471.SUBVAR_05137	265.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0100765_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0100765_4	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0100765_4	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0100765_5	UniRef90_A0A6N7TLT0	338.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0100765_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0100765_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0100765_5	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0100765_7	phrog_888	64.4	3.2e-35	N/A	unknown function
UniRef90	UHGV-0100765_7	UniRef90_A0A6N7TMA2	434.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0100765_7	1415774.U728_165	84.3	1.13e-16	Short C-terminal domain	N/A
Pfam	UHGV-0100765_7	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-0100765_7	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-0100765_7	PF15947,PF14471	N/A	N/A	N/A	N/A
KOfam	UHGV-0100765_10	K22300	50.0	0.000000000000066	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0100765_10	phrog_2967	46.7	0.00000000000055	transcriptional regulator	transcription regulation
UniRef90	UHGV-0100765_10	UniRef90_A0A844DFR0	169.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0100765_10	748224.HMPREF9436_01444	140.0	5.38995e-41	N/A	N/A
Pfam	UHGV-0100765_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0100765_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0100765_10	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0100765_14	phrog_2593	95.0	8e-28	anti-repressor	transcription regulation
UniRef90	UHGV-0100765_14	UniRef90_UPI001C2426FA	143.0	1e-37	phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-0100765_14	476272.RUMHYD_03308	155.0	3.64338e-44	BRO family, N-terminal domain	N/A
Pfam	UHGV-0100765_14	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0100765_14	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0100765_14	PF02498,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0100765_15	phrog_4433	131.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0100765_15	394503.Ccel_3068	117.0	3.59e-30	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0100765_15	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0100765_17	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0100765_18	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0100765_20	PF14120	N/A	N/A	N/A	N/A
PHROG	UHGV-0100765_21	phrog_674	147.6	9.10844e-44	N/A	unknown function
UniRef90	UHGV-0100765_21	UniRef90_A0A3A6E846	484.0	0	N/A	N/A
eggNOG-mapper	UHGV-0100765_21	556268.OFAG_00840	87.0	5.43e-17	N/A	N/A
Pfam	UHGV-0100765_21	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0100765_21	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0100765_22	phrog_2760	183.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0100765_22	UniRef90_A0A3A6EAW6	539.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0100765_22	1235794.C811_01355	157.0	2.0459e-43	RecT family	N/A
Pfam	UHGV-0100765_22	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0100765_22	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0100765_22	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0100765_22	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
UniRef90	UHGV-0100765_23	UniRef90_UPI001CBB85F6	107.0	2.97e-26	single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0100765_23	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0100765_24	K02086	63.0	5.1e-18	dnaD; DNA replication protein	N/A
PHROG	UHGV-0100765_24	phrog_186	78.9	6.8e-23	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0100765_24	UniRef90_A0A844D5V0	220.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0100765_24	748224.HMPREF9436_03357	65.9	0.000000000689	N/A	N/A
Pfam	UHGV-0100765_24	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0100765_24	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0100765_24	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0100765_24	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0100765_25	PF11417	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0100765_28	445972.ANACOL_00166	106.0	6.64e-28	N/A	N/A
PHROG	UHGV-0100765_30	phrog_14697	50.9	0.000000000000021	N/A	unknown function
eggNOG-mapper	UHGV-0100765_30	665950.HMPREF1025_01969	68.2	0.0000000000658	COG NOG28949 non supervised orthologous group	N/A
COG	UHGV-0100765_30	COG0241	N/A	N/A	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	N/A
KOfam	UHGV-0100765_31	K01160	59.8	8.5e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0100765_31	phrog_34	56.9	4.6e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0100765_31	UniRef90_A0A6N7TND6	227.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0100765_31	875454.BAEW01000002_gene491	135.0	1.87e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0100765_31	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0100765_31	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0100765_31	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0100765_33	phrog_36	68.1	1.6e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0100765_33	UniRef90_A0A6N7TNN9	272.0	0	N/A	N/A
eggNOG-mapper	UHGV-0100765_33	748224.HMPREF9436_01463	80.5	2.86e-17	N/A	N/A
Pfam	UHGV-0100765_33	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0100765_33	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
UniRef90	UHGV-0100765_34	UniRef90_UPI0018CC2891	116.0	2.94e-30	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0100765_34	1235790.C805_00037	111.0	3.67e-29	N/A	N/A
structural_annotation	UHGV-0100765_34	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-0100765_35	K06909	143.7	1.80067e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0100765_35	phrog_10250	171.8	0	N/A	unknown function
UniRef90	UHGV-0100765_35	UniRef90_A0A844D8I4	847.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0100765_35	411490.ANACAC_00783	489.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0100765_35	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0100765_35	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0100765_35	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0100765_35	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0100765_35	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0100765_36	phrog_64	117.8	4.8e-35	portal protein	head and packaging
UniRef90	UHGV-0100765_36	UniRef90_A0A6N7TNT3	828.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0100765_36	642492.Clole_2764	75.1	0.0000000000125	phage portal protein, SPP1	N/A
Pfam	UHGV-0100765_36	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0100765_36	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0100765_38	phrog_2468	80.4	1.4e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0100765_38	UniRef90_A0A6N7TLR7	633.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0100765_38	1504822.CCNO01000013_gene286	113.0	7.04e-25	cell adhesion	N/A
Pfam	UHGV-0100765_38	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0100765_38	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0100765_38	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0100765_39	706437.HMPREF0813_02005	87.4	1.96e-20	N/A	N/A
PHROG	UHGV-0100765_40	phrog_8680	198.7	0	N/A	unknown function
UniRef90	UHGV-0100765_40	UniRef90_A0A844D688	453.0	0	N/A	N/A
eggNOG-mapper	UHGV-0100765_40	1423790.BN53_04265	176.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-0100765_40	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0100765_40	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0100765_40	PF14386	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0100765	Yes	23,625	54	56	1