vOTU vOTU-143491

vOTU: vOTU-143491

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-143491
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vOTU-143491
Host lineage
Host range breadth
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0210730
Biosample ID	SAMN11893691
Genome length (bp)	28,707 bps
CheckV completeness	76.03% (Medium-quality)
CDS count	40
CDS density	87.07%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 76.03)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0210730_4	K07729	58.7	1.3e-16	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0210730_4	phrog_8	50.6	0.000000000000047	transcriptional regulator	transcription regulation
UniRef90	UHGV-0210730_4	UniRef90_A0A4S2A9B1	75.5	1.37e-16	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0210730_4	97138.C820_00785	58.9	0.0000000000632	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0210730_4	retron_type_VI_hth_cluster2_1	48.3	0.00000000000029	N/A	Retron
Pfam	UHGV-0210730_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0210730_4	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0210730_5	phrog_8	56.1	8.1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0210730_5	UniRef90_UPI0006833B09	120.0	3.1e-34	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0210730_5	1226325.HMPREF1548_03112	92.4	2.94e-22	Helix-turn-helix domain	N/A
Pfam	UHGV-0210730_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0210730_5	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0210730_6	UniRef90_A0A4S2A8J1	152.0	1.4013e-45	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0210730_6	748727.CLJU_c39230	124.0	7.39e-35	N/A	N/A
Pfam	UHGV-0210730_6	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
structural_annotation	UHGV-0210730_6	PF18812,TIGR00053,COG2929	N/A	N/A	N/A	N/A
KOfam	UHGV-0210730_7	K22300	40.8	0.000000000046	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0210730_7	phrog_8	69.4	7.9e-20	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0210730_7	742733.HMPREF9469_04846	103.0	5.99e-27	sequence-specific DNA binding	N/A
Pfam	UHGV-0210730_7	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0210730_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0210730_8	UniRef90_A0A0A2TM03	145.0	6.44597e-44	Antitoxin	N/A
eggNOG-mapper	UHGV-0210730_8	635013.TherJR_0894	134.0	6.28e-40	Antitoxin component of a toxin-antitoxin (TA) module	N/A
Pfam	UHGV-0210730_8	PF02604	N/A	N/A	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
NCBIFam	UHGV-0210730_8	TIGR01552.1	N/A	N/A	type II toxin-antitoxin system prevent-host-death family antitoxin	N/A
COG	UHGV-0210730_8	COG2161	N/A	N/A	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	N/A
structural_annotation	UHGV-0210730_8	PF02604,TIGR01552,COG2161	N/A	N/A	N/A	N/A
KOfam	UHGV-0210730_9	K19092	68.0	2.1e-19	parE1_3_4; toxin ParE1/3/4	N/A
PHROG	UHGV-0210730_9	phrog_2455	88.5	5.2e-26	N/A	unknown function
UniRef90	UHGV-0210730_9	UniRef90_R5BFI4	116.0	1.09e-31	Addiction module toxin RelE/StbE family	N/A
eggNOG-mapper	UHGV-0210730_9	643648.Slip_2180	108.0	2.86e-29	ParE toxin of type II toxin-antitoxin system, parDE	N/A
Pfam	UHGV-0210730_9	PF05016	N/A	N/A	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
COG	UHGV-0210730_9	COG3668	N/A	N/A	Plasmid stabilization system protein ParE	N/A
structural_annotation	UHGV-0210730_9	PF05016,TIGR00053,COG3668	N/A	N/A	N/A	N/A
KOfam	UHGV-0210730_10	K06400	302.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0210730_10	phrog_95	329.9	0	integrase	integration and excision
UniRef90	UHGV-0210730_10	UniRef90_R6Q6C1	652.0	0	Resolvase N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0210730_10	1120998.AUFC01000016_gene36	404.0	0	resolvase	N/A
Pfam	UHGV-0210730_10	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0210730_10	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0210730_10	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0210730_10	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0210730_10	PF07508,NF041201	N/A	N/A	N/A	N/A
KOfam	UHGV-0210730_12	K11062	128.0	7e-38	entD; probable enterotoxin D	N/A
PHROG	UHGV-0210730_12	phrog_670	145.6	4.2039e-43	endolysin	lysis
UniRef90	UHGV-0210730_12	UniRef90_A0A7X5D6D2	252.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0210730_12	97138.C820_00251	245.0	0	Ami_2	N/A
Pfam	UHGV-0210730_12	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0210730_12	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0210730_12	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-0210730_14	UniRef90_R5ABZ9	102.0	5.3e-27	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0210730_14	97138.C820_01991	85.1	4.54e-21	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0210730_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0210730_14	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0210730_15	phrog_297	71.4	1.5e-20	holin	lysis
UniRef90	UHGV-0210730_15	UniRef90_UPI00085C48B3	99.0	1.81e-25	phage holin	N/A
eggNOG-mapper	UHGV-0210730_15	1120998.AUFC01000030_gene2252	79.7	1.24e-18	Bacteriophage holin	N/A
Pfam	UHGV-0210730_15	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0210730_15	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0210730_15	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0210730_15	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0210730_16	phrog_1009	43.2	0.0000000000062	N/A	unknown function
eggNOG-mapper	UHGV-0210730_16	97138.C820_00248	99.8	1.79e-26	N/A	N/A
PHROG	UHGV-0210730_18	phrog_1067	286.9	0	minor head protein	head and packaging
UniRef90	UHGV-0210730_18	UniRef90_A0A136WG48	453.0	0	Prophage endopeptidase tail	N/A
eggNOG-mapper	UHGV-0210730_18	272562.CA_C0063	218.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0210730_18	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0210730_18	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0210730_18	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0210730_18	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0210730_19	phrog_3639	73.3	2.6e-21	minor tail protein	tail
eggNOG-mapper	UHGV-0210730_19	1499683.CCFF01000005_gene81	97.8	1.51e-18	N/A	N/A
Pfam	UHGV-0210730_19	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
COG	UHGV-0210730_19	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
structural_annotation	UHGV-0210730_19	PF10651,PF21722,NF032891,COG2372	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0210730_20	cluster_44547	29.3	0.000257	NA	N/A
structural_annotation	UHGV-0210730_21	PF01402,NF010256	N/A	N/A	N/A	N/A
PHROG	UHGV-0210730_22	phrog_33	101.9	9.5e-30	distal tail protein Dit	tail
UniRef90	UHGV-0210730_22	UniRef90_A0A136WFP1	259.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0210730_22	1262449.CP6013_2095	160.0	0	tail component	N/A
Pfam	UHGV-0210730_22	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0210730_22	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0210730_22	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0210730_22	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0210730_23	K11499	49.4	1.5e-21	CENPF; centromere protein F	N/A
PHROG	UHGV-0210730_23	phrog_23464	214.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0210730_23	33035.JPJF01000023_gene3232	227.0	0	phage tail tape measure protein	N/A
COG	UHGV-0210730_23	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0210730_23	PF02050	N/A	N/A	N/A	N/A
UniRef90	UHGV-0210730_24	UniRef90_UPI00166A19BB	58.9	0.00000295	FxLYD domain-containing protein	N/A
eggNOG-mapper	UHGV-0210730_24	1262449.CP6013_2082	132.0	1.34e-34	N/A	N/A
NCBIFam	UHGV-0210730_24	NF038353.1	N/A	N/A	FxLYD domain-containing protein	N/A
PHROG	UHGV-0210730_26	phrog_38429	43.5	0.0000000000047	N/A	unknown function
structural_annotation	UHGV-0210730_27	PF09274,NF008671,COG4710	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0210730_29	548479.HMPREF0573_11230	51.2	0.00000233	N/A	N/A
structural_annotation	UHGV-0210730_29	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0210730_30	phrog_88	110.6	1.2e-32	major tail protein	tail
UniRef90	UHGV-0210730_30	UniRef90_G9YSC5	235.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0210730_30	573061.Clocel_3970	81.3	2.24e-16	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0210730_30	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0210730_30	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0210730_30	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0210730_31	phrog_5	46.5	0.00000000000077	tail completion or Neck1 protein	connector
UniRef90	UHGV-0210730_31	UniRef90_R6UNR2	101.0	2.17e-24	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0210730_31	908340.HMPREF9406_2573	101.0	3.63e-25	N/A	N/A
structural_annotation	UHGV-0210730_31	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0210730_32	999413.HMPREF1094_02005	90.5	3.8e-22	N/A	N/A
structural_annotation	UHGV-0210730_32	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0210730_33	phrog_19734	125.7	2.1e-37	N/A	unknown function
UniRef90	UHGV-0210730_33	UniRef90_A0A6I7GNS7	143.0	1.12006e-41	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0210730_33	1235798.C817_04587	62.0	0.000000000108	N/A	N/A
structural_annotation	UHGV-0210730_33	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0210730_34	phrog_749	75.7	4.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0210730_34	1415774.U728_1251	80.5	2.98e-18	N/A	N/A
PHROG	UHGV-0210730_35	phrog_10	144.0	1.49939e-42	major head protein	head and packaging
UniRef90	UHGV-0210730_35	UniRef90_UPI0018757887	583.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0210730_35	1235792.C808_00086	439.0	0	Phage capsid family	N/A
Pfam	UHGV-0210730_35	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0210730_35	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0210730_35	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0210730_35	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0210730_35	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0210730_36	K01358	150.6	1.26117e-44	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0210730_36	phrog_94	213.4	0	head maturation protease	head and packaging
UniRef90	UHGV-0210730_36	UniRef90_A0A6A8VIT3	201.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0210730_36	1232452.BAIB02000007_gene1626	181.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0210730_36	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0210730_36	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
PHROG	UHGV-0210730_37	phrog_12	132.5	2.5e-39	portal protein	head and packaging
UniRef90	UHGV-0210730_37	UniRef90_UPI0018755FA4	403.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0210730_37	349161.Dred_2606	306.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0210730_37	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0210730_37	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0210730_37	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0210730_37	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0210730_38	phrog_9	242.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0210730_38	UniRef90_UPI0018737C02	878.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0210730_38	1235792.C808_00083	614.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0210730_38	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0210730_38	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0210730_38	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0210730_39	phrog_13845	89.6	2.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0210730_39	1399942.U3PDR2_9CAUD	89.7	1.24e-21	N/A	N/A
structural_annotation	UHGV-0210730_39	PF05119,COG3747	N/A	N/A	N/A	N/A
UniRef90	UHGV-0210730_40	UniRef90_UPI000472E4B8	97.1	1.47e-22	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0210730_40	649747.HMPREF0083_01686	109.0	2.16e-26	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
COG	UHGV-0210730_40	COG0270	N/A	N/A	DNA-cytosine methylase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0210730	Yes	28,707	50	76	1