vOTU vOTU-144588

vOTU: vOTU-144588

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-144588
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Butyricicoccaceae → Agathobaculum → Agathobaculum sp900291975
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-02398 → vGENUS-10751 → vOTU-144588
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Dysosmobacter → Dysosmobacter welbionis
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-1332147
Biosample ID	N/A
Genome length (bp)	33,499 bps
CheckV completeness	58.86% (Medium-quality)
CDS count	61
CDS density	86.92%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Dysosmobacter → Dysosmobacter welbionis	Total connections	64	Host agreement	89.06
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Butyricicoccaceae → Agathobaculum → Agathobaculum sp900291975	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 58.86)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1332147_1	phrog_38	174.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1332147_1	UniRef90_A0A810QA10	836.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1332147_1	1298920.KI911353_gene2682	441.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-1332147_1	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1332147_1	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1332147_1	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-1332147_2	phrog_3675	103.4	1.1e-30	N/A	unknown function
UniRef90	UHGV-1332147_2	UniRef90_A0A1V5XCJ6	147.0	6.16571e-44	YjcQ protein	N/A
eggNOG-mapper	UHGV-1332147_2	1235802.C823_04879	124.0	1.3e-35	YjcQ protein	N/A
Pfam	UHGV-1332147_2	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-1332147_2	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1332147_3	1500897.JQNA01000001_gene5556	47.8	0.00000557	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-1332147_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1332147_6	PF20549,COG4728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1332147_7	397290.C810_01347	52.8	0.000000015	N/A	N/A
structural_annotation	UHGV-1332147_7	PF18267	N/A	N/A	N/A	N/A
UniRef90	UHGV-1332147_10	UniRef90_UPI001D07B715	174.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1332147_10	1235793.C809_00539	86.3	1.2e-18	N/A	N/A
structural_annotation	UHGV-1332147_10	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1332147_11	phrog_1709	46.6	0.00000000000051	N/A	unknown function
eggNOG-mapper	UHGV-1332147_11	1235793.C809_02477	67.4	0.000000000000234	N/A	N/A
structural_annotation	UHGV-1332147_11	PF21076	N/A	N/A	N/A	N/A
KOfam	UHGV-1332147_12	K02316	96.5	3.2e-28	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1332147_12	phrog_864	256.3	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1332147_12	UniRef90_UPI001D08D333	939.0	0	phage/plasmid primase, P4 family	N/A
eggNOG-mapper	UHGV-1332147_12	469596.HMPREF9488_01547	266.0	0	D5 N terminal like	N/A
PADLOC	UHGV-1332147_12	drt-cluster192	40.7	0.000000000000036	DRT	DRT
Pfam	UHGV-1332147_12	PF13155	N/A	N/A	Toprim-like	Toprim_2
Pfam	UHGV-1332147_12	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-1332147_12	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-1332147_12	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-1332147_12	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-1332147_12	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-1332147_12	PF04735,MF_00974,MF_04000,NF005477,COG3378,COG0358	N/A	N/A	N/A	N/A
UniRef90	UHGV-1332147_13	UniRef90_R6H309	134.0	8.36e-38	Holliday junction resolvase RecU	N/A
Pfam	UHGV-1332147_13	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-1332147_13	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-1332147_13	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-1332147_15	phrog_3409	51.7	0.000000000000022	N/A	unknown function
UniRef90	UHGV-1332147_15	UniRef90_UPI00164BFD56	231.0	0	N/A	N/A
eggNOG-mapper	UHGV-1332147_15	977801.F0PIH7_9VIRU	52.4	0.000000511	N/A	N/A
Pfam	UHGV-1332147_15	PF17400	N/A	N/A	N/A	DUF5406
structural_annotation	UHGV-1332147_15	PF17400	N/A	N/A	N/A	N/A
PHROG	UHGV-1332147_16	phrog_2245	98.0	9.9e-29	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-1332147_16	UniRef90_A0A4U9RLZ8	84.0	8.63e-19	N/A	N/A
eggNOG-mapper	UHGV-1332147_16	428125.CLOLEP_01814	109.0	3.63e-29	COG NOG14118 non supervised orthologous group	N/A
PHROG	UHGV-1332147_20	phrog_22543	44.3	0.0000000000011	N/A	unknown function
UniRef90	UHGV-1332147_21	UniRef90_UPI00164A8DEC	146.0	2.66247e-44	helix-turn-helix transcriptional regulator	N/A
PHROG	UHGV-1332147_22	phrog_38832	82.4	6.1e-33	N/A	unknown function
eggNOG-mapper	UHGV-1332147_22	665956.HMPREF1032_03087	106.0	1.75e-26	N/A	N/A
structural_annotation	UHGV-1332147_22	PF11132	N/A	N/A	N/A	N/A
PHROG	UHGV-1332147_24	phrog_25732	68.2	9.2e-20	N/A	unknown function
UniRef90	UHGV-1332147_24	UniRef90_A0A7G9WJW0	60.1	0.00000000605	Lar family restriction alleviation protein	N/A
UniRef90	UHGV-1332147_26	UniRef90_UPI001C3A10B1	64.3	0.0000000000475	Zinc ribbon domain-containing protein	N/A
PHROG	UHGV-1332147_27	phrog_9298	342.1	0	radical SAM domain protein	other
UniRef90	UHGV-1332147_27	UniRef90_UPI0015837103	522.0	0	radical SAM protein	N/A
eggNOG-mapper	UHGV-1332147_27	1235800.C819_00846	365.0	0	N/A	N/A
COG	UHGV-1332147_27	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-1332147_27	MF_01864,NF010916,COG2516	N/A	N/A	N/A	N/A
KOfam	UHGV-1332147_29	K17677	382.7	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1332147_29	phrog_16	248.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1332147_29	UniRef90_A0A2U1BEG6	603.0	0	Superfamily II DNA or RNA helicase	N/A
eggNOG-mapper	UHGV-1332147_29	742738.HMPREF9460_02499	574.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-1332147_29	mREase_IV_00005	105.2	5.3e-31	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1332147_29	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1332147_29	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1332147_29	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1332147_29	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1332147_30	phrog_378	40.3	0.000000000067	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1332147_30	UniRef90_UPI001D0929DA	202.0	0	N/A	N/A
Pfam	UHGV-1332147_30	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-1332147_30	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1332147_32	phrog_28876	144.7	1.4013e-43	metal-dependent phosphohydrolase	other
UniRef90	UHGV-1332147_32	UniRef90_UPI001D067942	259.0	0	HD domain-containing protein	N/A
eggNOG-mapper	UHGV-1332147_32	1408437.JNJN01000035_gene1812	194.0	0	metal-dependent phosphohydrolase, HD sub domain	N/A
COG	UHGV-1332147_32	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-1332147_32	PF07514,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
PHROG	UHGV-1332147_33	phrog_124	82.0	8.8e-24	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1332147_33	UniRef90_UPI001D097C08	365.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1332147_33	1227360.C176_12573	82.4	3.37e-16	AAA domain	N/A
Pfam	UHGV-1332147_33	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1332147_33	PF13479,MF_00268,TIGR01618,COG2874	N/A	N/A	N/A	N/A
PHROG	UHGV-1332147_34	phrog_1227	229.9	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1332147_34	UniRef90_UPI001D05E08F	330.0	0	PD-(D/E)XK nuclease-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1332147_34	1120998.AUFC01000030_gene2216	278.0	0	N/A	N/A
Pfam	UHGV-1332147_34	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-1332147_34	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1332147_34	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
UniRef90	UHGV-1332147_38	UniRef90_UPI00164AF307	84.0	1.84e-19	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1332147_38	646529.Desaci_3040	53.1	0.0000000332	TIGRFAM DNA binding domain, excisionase family	N/A
structural_annotation	UHGV-1332147_38	PF12728,TIGR01764	N/A	N/A	N/A	N/A
PHROG	UHGV-1332147_40	phrog_1486	47.7	0.00000000000027	membrane protein	moron, auxiliary metabolic gene and host takeover
KOfam	UHGV-1332147_42	K01358	60.4	3.5e-17	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1332147_42	phrog_94	52.6	0.0000000000000072	head maturation protease	head and packaging
UniRef90	UHGV-1332147_42	UniRef90_A0A4V2SG87	244.0	0	ClpP protease-like protein	N/A
eggNOG-mapper	UHGV-1332147_42	1240350.AMZE01000052_gene828	118.0	5.89e-31	peptidase S14 ClpP	N/A
Pfam	UHGV-1332147_42	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1332147_42	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
PHROG	UHGV-1332147_46	phrog_1468	43.2	0.0000000000022	transcriptional repressor	transcription regulation
UniRef90	UHGV-1332147_46	UniRef90_A0A845MZ29	102.0	5.75e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1332147_46	742738.HMPREF9460_02486	81.3	2.03e-19	N/A	N/A
structural_annotation	UHGV-1332147_46	TIGR03070	N/A	N/A	N/A	N/A
PHROG	UHGV-1332147_47	phrog_8	55.1	0.0000000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-1332147_47	UniRef90_G9YWB7	151.0	4.2039e-45	Toxin-antitoxin system, antitoxin component, Xre domain protein	N/A
eggNOG-mapper	UHGV-1332147_47	742738.HMPREF9460_02485	151.0	1.4013e-45	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1332147_47	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1332147_47	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1332147_47	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1332147_48	UniRef90_UPI001C3AA0FC	74.3	0.0000000000000261	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1332147_48	1007096.BAGW01000011_gene2354	55.1	0.00000011	IrrE N-terminal-like domain	N/A
COG	UHGV-1332147_48	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
PHROG	UHGV-1332147_49	phrog_2158	99.2	4.1e-29	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1332147_49	UniRef90_A0A1H5VZC3	486.0	0	Abortive infection bacteriophage resistance protein	N/A
eggNOG-mapper	UHGV-1332147_49	877421.AUJT01000050_gene1534	474.0	0	Abi-like protein	N/A
PADLOC	UHGV-1332147_49	AbiD	97.1	3.9e-28	AbiD	Abi
Pfam	UHGV-1332147_49	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-1332147_49	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-1332147_49	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-1332147_50	K14059	299.7	0	int; integrase	N/A
PHROG	UHGV-1332147_50	phrog_1	222.0	0	integrase	integration and excision
UniRef90	UHGV-1332147_50	UniRef90_A0A417TVL1	724.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1332147_50	1408437.JNJN01000010_gene1228	580.0	0	Phage integrase family	N/A
Pfam	UHGV-1332147_50	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1332147_50	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-1332147_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1332147_50	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1332147_50	PF00589,PF13102,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1332147_51	1378168.N510_03079	136.0	3e-36	N/A	N/A
eggNOG-mapper	UHGV-1332147_52	1408437.JNJN01000043_gene802	174.0	0	N/A	N/A
PHROG	UHGV-1332147_53	phrog_16490	254.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1332147_53	1408437.JNJN01000043_gene803	369.0	0	N/A	N/A
eggNOG-mapper	UHGV-1332147_55	1408437.JNJN01000043_gene805	150.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-1332147_57	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1332147_58	phrog_9589	114.6	1e-33	endolysin	lysis
UniRef90	UHGV-1332147_58	UniRef90_UPI00164A5C85	391.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1332147_58	1123075.AUDP01000020_gene1533	140.0	8.07e-36	pathogenesis	N/A
Pfam	UHGV-1332147_58	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1332147_58	COG3942	N/A	N/A	Surface antigen	N/A
structural_annotation	UHGV-1332147_58	PF00877,TIGR02594	N/A	N/A	N/A	N/A
PHROG	UHGV-1332147_59	phrog_1129	71.0	1.2e-20	holin	lysis
UniRef90	UHGV-1332147_59	UniRef90_UPI000B35DBBB	134.0	1.68e-39	phage holin family protein	N/A
eggNOG-mapper	UHGV-1332147_59	411473.RUMCAL_01944	113.0	6.64e-32	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1332147_59	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1332147_59	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1332147_60	phrog_937	50.5	0.000000000000009	hemolysin	other
eggNOG-mapper	UHGV-1332147_60	445972.ANACOL_03381	93.6	2.28e-23	N/A	N/A
KOfam	UHGV-1332147_61	K13277	65.4	6.9e-19	epr; minor extracellular protease Epr [EC:3.4.21.-]	N/A
UniRef90	UHGV-1332147_61	UniRef90_UPI00164A3975	411.0	0	S8 family serine peptidase	N/A
Pfam	UHGV-1332147_61	PF00082	N/A	N/A	Subtilase family	Peptidase_S8
Pfam	UHGV-1332147_61	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-1332147_61	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-1332147_61	PF00395,TIGR03921,COG1404	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1332147	Yes	33,499	46	59	1