vOTU vOTU-144634

vOTU: vOTU-144634

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-144634
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00124 → vGENUS-00131 → vOTU-144634
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0024070
Biosample ID	SAMEA4766012
Genome length (bp)	29,913 bps
CheckV completeness	72.95% (Medium-quality)
CDS count	52
CDS density	93.45%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	395	Host agreement	98.48
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 72.95)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0024070_1	UniRef90_A0A2A7ALS3	435.0	0	TMP_3 domain-containing protein	N/A
COG	UHGV-0024070_1	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0024070_2	phrog_33	79.7	6e-23	distal tail protein Dit	tail
UniRef90	UHGV-0024070_2	UniRef90_A0A173Z1X4	143.0	9.76e-39	Phage-related protein	N/A
eggNOG-mapper	UHGV-0024070_2	748727.CLJU_c03670	93.2	3.49e-20	tail component	N/A
NCBIFam	UHGV-0024070_2	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0024070_2	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0024070_2	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0024070_3	phrog_1067	172.6	0	minor head protein	head and packaging
UniRef90	UHGV-0024070_3	UniRef90_A0A2A7AM44	707.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0024070_3	1123263.AUKY01000068_gene489	190.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0024070_3	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0024070_3	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0024070_3	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0024070_3	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0024070_5	phrog_16653	77.8	1.3e-23	hydrolase	other
eggNOG-mapper	UHGV-0024070_5	320840.Q4ZCC6_9CAUD	62.4	0.000000393	peptidoglycan catabolic process	N/A
structural_annotation	UHGV-0024070_5	PF10651,PF01095	N/A	N/A	N/A	N/A
KOfam	UHGV-0024070_6	K07273	153.6	1.4013e-45	acm; lysozyme	N/A
PHROG	UHGV-0024070_6	phrog_291	108.7	5.5e-32	endolysin	lysis
UniRef90	UHGV-0024070_6	UniRef90_A0A564U0D3	416.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0024070_6	718252.FP2_04890	246.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0024070_6	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0024070_6	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0024070_6	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0024070_7	phrog_1863	76.0	2.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0024070_7	718252.FP2_04900	143.0	7.42688e-44	N/A	N/A
PHROG	UHGV-0024070_8	phrog_15303	83.3	2e-24	N/A	unknown function
structural_annotation	UHGV-0024070_10	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024070_11	UniRef90_A0A1Q9JGI6	65.9	0.0000000000447	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0024070_11	1033733.CAEK01000007_gene1628	87.0	4.7e-20	N/A	N/A
Pfam	UHGV-0024070_11	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0024070_11	PF16734,PF01402	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0024070_12	742738.HMPREF9460_00886	75.9	0.00000000000000164	N/A	N/A
PHROG	UHGV-0024070_16	phrog_21718	41.5	0.000000000017	N/A	unknown function
PHROG	UHGV-0024070_19	phrog_16490	105.5	6.09999e-41	N/A	unknown function
eggNOG-mapper	UHGV-0024070_19	1408437.JNJN01000043_gene803	164.0	0	N/A	N/A
eggNOG-mapper	UHGV-0024070_20	1408437.JNJN01000043_gene802	124.0	5.54e-35	N/A	N/A
eggNOG-mapper	UHGV-0024070_21	1408437.JNJN01000043_gene801	95.1	1.74e-21	N/A	N/A
KOfam	UHGV-0024070_22	K14059	182.2	0	int; integrase	N/A
PHROG	UHGV-0024070_22	phrog_1	166.5	0	integrase	integration and excision
UniRef90	UHGV-0024070_22	UniRef90_A0A367GI93	225.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0024070_22	1507.HMPREF0262_00307	163.0	6.5861e-44	Phage integrase family	N/A
Pfam	UHGV-0024070_22	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0024070_22	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0024070_22	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0024070_23	K15773	40.1	0.00000000006	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-0024070_23	phrog_1373	44.0	0.0000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0024070_23	UniRef90_A0A2A7AM70	177.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0024070_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0024070_23	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0024070_23	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0024070_26	K02342	40.3	0.000000000032	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0024070_26	phrog_192	55.4	7.7e-16	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0024070_26	1121333.JMLH01000063_gene1384	80.9	0.0000000000000281	SWIM zinc finger	N/A
COG	UHGV-0024070_26	COG0847	N/A	N/A	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	N/A
structural_annotation	UHGV-0024070_26	PF00929,PF00533,MF_00157,NF004844,COG0847	N/A	N/A	N/A	N/A
PHROG	UHGV-0024070_29	phrog_8	44.8	0.0000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-0024070_29	UniRef90_A0A2A7AM72	102.0	4.12e-26	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0024070_29	1378168.N510_01712	70.9	0.00000000000024	N/A	N/A
Pfam	UHGV-0024070_29	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0024070_29	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024070_30	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0024070_33	PF08772	N/A	N/A	Nin one binding (NOB1) Zn-ribbon like	NOB1_Zn_bind
PHROG	UHGV-0024070_35	phrog_32852	44.4	0.0000000000015	N/A	unknown function
structural_annotation	UHGV-0024070_36	PF10346,MF_00337,NF010671	N/A	N/A	N/A	N/A
PHROG	UHGV-0024070_39	phrog_14970	47.5	0.00000000000031	N/A	unknown function
COG	UHGV-0024070_39	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0024070_39	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0024070_40	phrog_72	45.8	0.000000000001	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0024070_40	411471.SUBVAR_05829	135.0	5.88e-38	N/A	N/A
structural_annotation	UHGV-0024070_40	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0024070_42	phrog_7566	83.9	1.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-0024070_42	411471.SUBVAR_05830	102.0	6.15e-27	N/A	N/A
KOfam	UHGV-0024070_43	K03111	137.9	9.99995e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0024070_43	phrog_44	143.8	9.09443e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024070_43	UniRef90_A0A329TTF5	196.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0024070_43	748224.HMPREF9436_00638	202.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0024070_43	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0024070_43	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0024070_43	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0024070_43	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0024070_43	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0024070_44	phrog_6969	58.4	9.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0024070_44	748224.HMPREF9436_00735	157.0	2.25609e-43	N/A	N/A
Pfam	UHGV-0024070_44	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-0024070_44	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0024070_44	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0024070_44	PF19481,PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0024070_46	K03496	205.2	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0024070_46	phrog_164	153.2	1.4013e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024070_46	UniRef90_A0A2A7B6H3	357.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0024070_46	411471.SUBVAR_05839	228.0	0	AAA domain	N/A
Pfam	UHGV-0024070_46	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0024070_46	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0024070_46	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
UniRef90	UHGV-0024070_47	UniRef90_A0A845R8R0	113.0	1.05e-29	N/A	N/A
KOfam	UHGV-0024070_48	K03497	94.4	2e-27	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0024070_48	phrog_4715	120.8	1e-35	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024070_48	UniRef90_A0A2A7AMC5	272.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0024070_48	411471.SUBVAR_05842	177.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0024070_48	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0024070_48	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0024070_48	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024070_49	PF04545	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0024070	Yes	29,913	51	73	1