vOTU vOTU-145587

vOTU: vOTU-145587

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-145587
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00011 → vSUBFAM-05595 → vOTU-145587
Host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pseudopneumoniae_J
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0358511
Biosample ID	SAMD00202457
Genome length (bp)	30,891 bps
CheckV completeness	78.58% (Medium-quality)
CDS count	36
CDS density	95.88%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pseudopneumoniae_J	Total connections	1	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 78.58)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0358511_1	phrog_69	313.8	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0358511_1	UniRef90_UPI00195B61AB	769.0	0	N/A	N/A
eggNOG-mapper	UHGV-0358511_1	1235799.C818_04197	385.0	0	N/A	N/A
Pfam	UHGV-0358511_1	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0358511_1	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0358511_1	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0358511_2	phrog_112	177.3	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0358511_2	UniRef90_UPI00195C34C5	420.0	0	N/A	N/A
eggNOG-mapper	UHGV-0358511_2	1449126.JQKL01000006_gene839	211.0	0	N/A	N/A
Pfam	UHGV-0358511_2	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0358511_2	PF10991,MF_04153,NF005241	N/A	N/A	N/A	N/A
KOfam	UHGV-0358511_3	K02334	835.6	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0358511_3	phrog_17	375.0	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0358511_3	UniRef90_UPI0019577E0B	1305.0	0	DNA polymerase	N/A
eggNOG-mapper	UHGV-0358511_3	1235799.C818_04199	805.0	0	DNA polymerase A domain	N/A
Pfam	UHGV-0358511_3	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0358511_3	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0358511_3	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0358511_4	phrog_256	987.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0358511_4	UniRef90_UPI001956D8B3	1508.0	0	virulence-associated E family protein	N/A
eggNOG-mapper	UHGV-0358511_4	1235799.C818_04200	876.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-0358511_4	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0358511_4	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0358511_4	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-0358511_5	phrog_93	67.4	2.2e-19	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0358511_5	UniRef90_A0A2X4N3Y7	165.0	0	VRR-NUC domain	N/A
eggNOG-mapper	UHGV-0358511_5	1118057.CAGX01000043_gene506	82.0	3.22e-19	VRR_NUC	N/A
structural_annotation	UHGV-0358511_5	PF01974,MF_01490,NF011269	N/A	N/A	N/A	N/A
KOfam	UHGV-0358511_6	K14440	129.3	1.4e-38	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0358511_6	phrog_62	402.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0358511_6	UniRef90_A0A2X4N6J8	877.0	0	DNA methylase	N/A
eggNOG-mapper	UHGV-0358511_6	1235799.C818_04202	606.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-0358511_6	ZorD1_00007	87.6	1.5e-25	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0358511_6	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0358511_6	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0358511_6	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0358511_6	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
UniRef90	UHGV-0358511_7	UniRef90_A0A2X4N3T8	75.1	1.2e-16	Predicted transcriptional regulator	N/A
Pfam	UHGV-0358511_7	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0358511_7	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-0358511_7	PF13443,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0358511_11	PF10957	N/A	N/A	N/A	N/A
PHROG	UHGV-0358511_12	phrog_7134	101.4	5.1e-30	N/A	unknown function
UniRef90	UHGV-0358511_12	UniRef90_A0A6H1F4R7	114.0	6.46e-31	Pathogenicity island protein	N/A
eggNOG-mapper	UHGV-0358511_12	562981.HMPREF0428_01414	114.0	1.08e-31	N/A	N/A
structural_annotation	UHGV-0358511_12	PF13601	N/A	N/A	N/A	N/A
PHROG	UHGV-0358511_13	phrog_98	60.5	3.1e-17	N/A	unknown function
UniRef90	UHGV-0358511_13	UniRef90_UPI0019591376	197.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0358511_13	562981.HMPREF0428_00992	92.4	1.71e-22	YopX protein	N/A
Pfam	UHGV-0358511_13	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0358511_13	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-0358511_15	UniRef90_A0A533I0C4	64.7	0.0000000000429	N/A	N/A
eggNOG-mapper	UHGV-0358511_16	1211035.CD30_08135	48.9	0.00000622	N/A	N/A
COG	UHGV-0358511_16	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
KOfam	UHGV-0358511_17	K07474	103.5	4.3e-30	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0358511_17	phrog_51	119.1	3.9e-35	terminase small subunit	head and packaging
UniRef90	UHGV-0358511_17	UniRef90_A0A2X4NG90	216.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0358511_17	562981.HMPREF0428_01825	192.0	0	Terminase small subunit	N/A
Pfam	UHGV-0358511_17	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0358511_17	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0358511_17	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0358511_18	K06909	265.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0358511_18	phrog_3717	151.8	2.8026e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0358511_18	UniRef90_A0A6H1F5B4	820.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0358511_18	562981.HMPREF0428_00985	820.0	0	Terminase RNAseH like domain	N/A
Pfam	UHGV-0358511_18	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0358511_18	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0358511_18	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0358511_18	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0358511_18	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0358511_19	phrog_533	580.3	0	portal protein	head and packaging
UniRef90	UHGV-0358511_19	UniRef90_A0A2X4N9Z3	886.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0358511_19	562981.HMPREF0428_00984	896.0	0	portal protein	N/A
Pfam	UHGV-0358511_19	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0358511_19	TIGR01542.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0358511_19	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0358511_20	phrog_581	288.2	0	minor head protein	head and packaging
UniRef90	UHGV-0358511_20	UniRef90_A0A6H1F2E7	650.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0358511_20	562981.HMPREF0428_00983	650.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0358511_20	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
structural_annotation	UHGV-0358511_20	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0358511_22	phrog_194	136.2	2.69999e-40	head scaffolding protein	head and packaging
UniRef90	UHGV-0358511_22	UniRef90_A0A6H1F2U6	334.0	0	Scaffolding protein	N/A
eggNOG-mapper	UHGV-0358511_22	646413.C5IUJ4_9CAUD	174.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0358511_22	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0358511_22	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0358511_23	phrog_840	414.7	0	major head protein	head and packaging
UniRef90	UHGV-0358511_23	UniRef90_A0A6H1F174	514.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0358511_23	562981.HMPREF0428_00981	514.0	0	N/A	N/A
structural_annotation	UHGV-0358511_23	PF03864,MF_04119,TIGR04387,COG1659	N/A	N/A	N/A	N/A
PHROG	UHGV-0358511_25	phrog_541	104.7	6.2e-31	head-tail adaptor	connector
UniRef90	UHGV-0358511_25	UniRef90_A0A380K6A1	131.0	5.86e-37	N/A	N/A
eggNOG-mapper	UHGV-0358511_25	562981.HMPREF0428_00979	243.0	0	N/A	N/A
PHROG	UHGV-0358511_26	phrog_793	95.0	5.4e-28	head-tail adaptor	connector
UniRef90	UHGV-0358511_26	UniRef90_A0A6H1F133	206.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0358511_26	562981.HMPREF0428_00978	206.0	0	Minor capsid protein	N/A
Pfam	UHGV-0358511_26	PF10665	N/A	N/A	Minor capsid protein	Minor_capsid_1
structural_annotation	UHGV-0358511_26	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0358511_27	phrog_556	79.1	4.8e-23	minor head protein	head and packaging
UniRef90	UHGV-0358511_27	UniRef90_A0A2X4NG99	194.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0358511_27	1214217.ALNF01000014_gene1371	113.0	5.92e-31	Minor capsid protein	N/A
Pfam	UHGV-0358511_27	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0358511_27	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0358511_28	phrog_913	143.1	8.00141e-43	minor head protein	head and packaging
UniRef90	UHGV-0358511_28	UniRef90_A0A6H1F3S7	259.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0358511_28	562981.HMPREF0428_00976	259.0	0	Minor capsid protein from bacteriophage	N/A
Pfam	UHGV-0358511_28	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0358511_28	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0358511_29	phrog_820	164.7	0	major tail protein	tail
UniRef90	UHGV-0358511_29	UniRef90_A0A6H1F450	301.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0358511_29	562981.HMPREF0428_00975	301.0	0	N/A	N/A
structural_annotation	UHGV-0358511_29	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0358511_30	phrog_1061	71.0	2e-20	N/A	unknown function
UniRef90	UHGV-0358511_30	UniRef90_A0A139RN56	90.5	4.96e-21	N/A	N/A
eggNOG-mapper	UHGV-0358511_30	562981.HMPREF0428_00974	225.0	0	N/A	N/A
structural_annotation	UHGV-0358511_30	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0358511_31	phrog_706	202.2	0	N/A	unknown function
UniRef90	UHGV-0358511_31	UniRef90_A0A2X4RDY7	255.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0358511_31	562981.HMPREF0428_00973	355.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0358511_31	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0358511_31	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0358511_32	phrog_1204	567.3	0	tail protein	tail
UniRef90	UHGV-0358511_32	UniRef90_A0A6H1F2D9	964.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0358511_32	562981.HMPREF0428_00972	964.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0358511_32	PF20155	N/A	N/A	Tape measure protein	TMP_3
Pfam	UHGV-0358511_32	PF04513	N/A	N/A	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
NCBIFam	UHGV-0358511_32	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0358511_32	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0358511_33	phrog_33	66.9	5.3e-19	distal tail protein Dit	tail
UniRef90	UHGV-0358511_33	UniRef90_A0A2X4NBW4	448.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0358511_33	562981.HMPREF0428_00971	455.0	0	phage tail	N/A
COG	UHGV-0358511_33	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0358511_33	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0358511_34	phrog_2270	248.5	0	N/A	unknown function
UniRef90	UHGV-0358511_34	UniRef90_A0A133ZZW7	758.0	0	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0358511_34	562981.HMPREF0428_00970	1461.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0358511_34	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0358511_34	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0358511_34	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0358511_34	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0358511_36	525255.HMPREF0077_0366	58.5	0.000000188	N/A	N/A
Pfam	UHGV-0358511_36	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0358511_36	PF07104	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0358511	Yes	30,891	34	79	1