vOTU vOTU-145959

vOTU: vOTU-145959

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-145959
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00187 → vGENUS-00218 → vOTU-145959
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales
Host range breadth	Order
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0061172
Biosample ID	N/A
Genome length (bp)	26,229 bps
CheckV completeness	56.71% (Medium-quality)
CDS count	37
CDS density	93.69%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	14	Host agreement	92.86
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales	Total connections	22	Host agreement	95.45

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 56.71)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0061172_1	phrog_30550	59.1	6.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0061172_1	1519439.JPJG01000077_gene920	51.6	0.000000427	Cell Wall Hydrolase	N/A
KOfam	UHGV-0061172_4	K03465	200.7	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0061172_4	phrog_85	136.8	1.10001e-40	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0061172_4	UniRef90_A0A6I2QY16	429.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0061172_4	690850.Desaf_0003	244.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0061172_4	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0061172_4	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-0061172_4	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0061172_4	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
KOfam	UHGV-0061172_5	K03698	50.0	0.000000000000049	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0061172_5	phrog_28876	102.0	5e-30	metal-dependent phosphohydrolase	other
UniRef90	UHGV-0061172_5	UniRef90_A0A1C5MUY3	244.0	0	Predicted HD-superfamily hydrolase	N/A
eggNOG-mapper	UHGV-0061172_5	1235800.C819_00499	164.0	0	metal-dependent phosphohydrolase, HD sub domain	N/A
Pfam	UHGV-0061172_5	PF01966	N/A	N/A	HD domain	HD
COG	UHGV-0061172_5	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0061172_5	PF21447,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
PHROG	UHGV-0061172_6	phrog_2245	110.8	1.1e-32	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0061172_6	UniRef90_A0A4U9RLZ8	87.4	1.41e-20	N/A	N/A
eggNOG-mapper	UHGV-0061172_6	1567010.A0A0A7RU90_9VIRU	86.7	1.55e-20	protein disulfide oxidoreductase activity	N/A
structural_annotation	UHGV-0061172_6	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
PHROG	UHGV-0061172_7	phrog_1485	98.1	1.1e-28	N/A	unknown function
UniRef90	UHGV-0061172_7	UniRef90_H1CES0	169.0	0	N/A	N/A
eggNOG-mapper	UHGV-0061172_7	1415774.U728_1099	102.0	2.05e-27	N/A	N/A
Pfam	UHGV-0061172_7	PF07659	N/A	N/A	Nucleotide modification associated domain 1	DUF1599
structural_annotation	UHGV-0061172_8	PF05037,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-0061172_10	phrog_434	83.2	3e-24	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0061172_10	UniRef90_H1CES3	687.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0061172_10	1121866.AUGK01000003_gene1405	360.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0061172_10	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
COG	UHGV-0061172_10	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0061172_10	PF09588,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0061172_11	phrog_155	62.0	9.9e-18	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0061172_11	UniRef90_UPI001D0608BA	470.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0061172_11	936572.HMPREF1148_0677	72.4	0.00000000000213	ERF superfamily	N/A
Pfam	UHGV-0061172_11	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0061172_11	PF04404	N/A	N/A	N/A	N/A
PHROG	UHGV-0061172_12	phrog_424	43.3	0.00000000000072	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0061172_12	UniRef90_UPI0018774E0E	212.0	0	reductase	N/A
eggNOG-mapper	UHGV-0061172_12	1235835.C814_01169	140.0	1.04e-37	N/A	N/A
COG	UHGV-0061172_12	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
KOfam	UHGV-0061172_13	K02319	41.2	0.0000000000079	pol; DNA polymerase, archaea type [EC:2.7.7.7]	N/A
PHROG	UHGV-0061172_13	phrog_1252	240.0	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0061172_13	UniRef90_UPI00189DB5D1	374.0	0	DNA polymerase elongation subunit (family B)	N/A
eggNOG-mapper	UHGV-0061172_13	1121866.AUGK01000003_gene1403	266.0	0	DNA replication proofreading	N/A
COG	UHGV-0061172_13	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
PHROG	UHGV-0061172_14	phrog_3377	167.9	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0061172_14	1434319.W5RVD4_9CAUD	114.0	4.1e-29	sequence-specific DNA binding transcription factor activity	N/A
PHROG	UHGV-0061172_15	phrog_1252	168.1	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0061172_15	UniRef90_A0A8E7D9P7	87.0	3.84e-16	DNA polymerase B-like protein	N/A
eggNOG-mapper	UHGV-0061172_15	1121866.AUGK01000003_gene1403	264.0	0	DNA replication proofreading	N/A
COG	UHGV-0061172_15	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
PHROG	UHGV-0061172_16	phrog_757	56.5	4.2e-16	DNA methyltransferase	other
UniRef90	UHGV-0061172_16	UniRef90_A0A6I2QY26	106.0	6.74e-26	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0061172_16	742733.HMPREF9469_01835	120.0	2.35e-32	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0061172_16	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0061172_17	K18959	171.2	0	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	N/A
PHROG	UHGV-0061172_17	phrog_16	183.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0061172_17	UniRef90_UPI00164EB154	723.0	0	DEAD/DEAH box helicase family protein	N/A
eggNOG-mapper	UHGV-0061172_17	1232453.BAIF02000010_gene3343	464.0	0	Type III restriction protein res subunit	N/A
PADLOC	UHGV-0061172_17	mREase_IV_00005	63.5	2.6e-18	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0061172_17	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0061172_17	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0061172_17	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0061172_17	PF04851,PF16203,MF_01489,TIGR00603,COG1061	N/A	N/A	N/A	N/A
UniRef90	UHGV-0061172_18	UniRef90_UPI0018982E6D	203.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0061172_18	1232453.BAIF02000010_gene3342	114.0	7.12e-31	Recombination protein U	N/A
Pfam	UHGV-0061172_18	PF01870	N/A	N/A	Archaeal holliday junction resolvase (hjc)	Hjc
structural_annotation	UHGV-0061172_18	PF03838,MF_01490,NF002581,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0061172_19	phrog_37900	73.9	5.7e-23	N/A	unknown function
UniRef90	UHGV-0061172_19	UniRef90_UPI00164E9551	520.0	0	N/A	N/A
eggNOG-mapper	UHGV-0061172_19	1519439.JPJG01000060_gene1894	122.0	1.39e-30	N/A	N/A
Pfam	UHGV-0061172_19	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0061172_19	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0061172_19	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-0061172_22	K01356	91.0	2.2e-26	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0061172_22	phrog_4	100.0	3.1e-29	transcriptional repressor	transcription regulation
UniRef90	UHGV-0061172_22	UniRef90_UPI00164CF79B	434.0	0	S24 family peptidase	N/A
eggNOG-mapper	UHGV-0061172_22	641112.ACOK01000103_gene520	108.0	2.3e-26	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0061172_22	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0061172_22	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0061172_22	PF00717,PF12844,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-0061172_23	K06400	371.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0061172_23	phrog_95	356.5	0	integrase	integration and excision
UniRef90	UHGV-0061172_23	UniRef90_UPI00164E9A6A	1038.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0061172_23	445972.ANACOL_03320	389.0	0	N/A	N/A
Pfam	UHGV-0061172_23	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0061172_23	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0061172_23	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0061172_23	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0061172_23	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0061172_26	phrog_14030	41.2	0.000000000006	N/A	unknown function
UniRef90	UHGV-0061172_26	UniRef90_UPI00164EA432	574.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0061172_26	1235797.C816_02842	230.0	0	mannosyl-glycoprotein	N/A
Pfam	UHGV-0061172_26	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0061172_26	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0061172_26	PF08460,PF10030,TIGR02594,NF041850,COG4322,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0061172_28	phrog_1863	68.4	6.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-0061172_28	718252.FP2_04900	115.0	7.33e-33	N/A	N/A
PHROG	UHGV-0061172_29	phrog_30034	72.9	4.8e-21	N/A	unknown function
UniRef90	UHGV-0061172_29	UniRef90_UPI00189E45A0	146.0	1.47e-40	chitinase	N/A
eggNOG-mapper	UHGV-0061172_29	994573.T472_0212005	106.0	1.25e-25	N/A	N/A
Pfam	UHGV-0061172_29	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
KOfam	UHGV-0061172_30	K00986	72.2	7.5e-21	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0061172_30	phrog_1423	176.8	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0061172_30	UniRef90_UPI00164D8919	759.0	0	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0061172_30	521003.COLINT_02359	238.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0061172_30	icity0040	64.7	2.2e-18	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0061172_30	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0061172_30	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0061172_30	PF00078,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0061172_32	phrog_30516	58.0	7.6e-17	N/A	unknown function
structural_annotation	UHGV-0061172_32	PF05635,NF008911	N/A	N/A	N/A	N/A
PHROG	UHGV-0061172_33	phrog_37900	97.1	1.3e-29	N/A	unknown function
UniRef90	UHGV-0061172_33	UniRef90_UPI00164D57E4	704.0	0	N/A	N/A
eggNOG-mapper	UHGV-0061172_33	1519439.JPJG01000060_gene1894	194.0	0	N/A	N/A
Pfam	UHGV-0061172_33	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0061172_33	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0061172_33	PF19789,PF14686,TIGR04183,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-0061172_34	phrog_18725	48.2	5.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-0061172_34	1226322.HMPREF1545_00062	93.6	1.84e-21	N/A	N/A
PHROG	UHGV-0061172_35	phrog_13879	269.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0061172_35	665956.HMPREF1032_03630	215.0	0	N/A	N/A
structural_annotation	UHGV-0061172_35	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0061172_36	phrog_1194	93.2	2.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0061172_36	1298920.KI911353_gene4840	134.0	8.71e-39	N/A	N/A
Pfam	UHGV-0061172_36	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0061172_36	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0061172_37	742733.HMPREF9469_01814	67.0	0.00000000949	tape measure	N/A
COG	UHGV-0061172_37	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0061172	Yes	26,229	50	57	1
UHGV-1489835	No	26,229	50	57	1