vOTU vOTU-146175

vOTU: vOTU-146175

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-146175
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00317 → vGENUS-09244 → vOTU-146175
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → MGYG000000746
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0134718
Biosample ID	N/A
Genome length (bp)	26,368 bps
CheckV completeness	77.24% (Medium-quality)
CDS count	41
CDS density	93.66%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → MGYG000000746	Total connections	19	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 77.24)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0134718_1	K02314	116.0	3.9e-34	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0134718_1	phrog_19	112.5	4.2e-33	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0134718_1	UniRef90_A0A3D4EGZ7	88.6	1.65e-16	DNA helicase	N/A
eggNOG-mapper	UHGV-0134718_1	1232452.BAIB02000003_gene257	97.4	1.3e-20	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0134718_1	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0134718_1	COG0305	N/A	N/A	Replicative DNA helicase	N/A
PHROG	UHGV-0134718_3	phrog_27610	54.6	0.0000000000000012	N/A	unknown function
KOfam	UHGV-0134718_4	K03496	195.9	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0134718_4	phrog_164	166.9	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0134718_4	UniRef90_R5EEH2	280.0	0	CobQ/CobB/MinD/ParA nucleotide binding domain protein	N/A
eggNOG-mapper	UHGV-0134718_4	742738.HMPREF9460_00854	204.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0134718_4	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0134718_4	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0134718_4	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0134718_5	K03497	85.5	8.8e-25	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0134718_5	phrog_27290	357.3	0	N/A	unknown function
UniRef90	UHGV-0134718_5	UniRef90_A0A3D4EJM0	290.0	0	Chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-0134718_5	742738.HMPREF9460_00856	245.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0134718_5	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0134718_5	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0134718_5	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0134718_7	phrog_3584	131.9	5.2e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0134718_7	1203606.HMPREF1526_00985	160.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0134718_7	PF01446,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0134718_8	phrog_119	69.0	6.6e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0134718_8	UniRef90_U4QWM3	112.0	3.1e-30	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0134718_8	588581.Cpap_1277	115.0	2.22e-32	HNH nucleases	N/A
COG	UHGV-0134718_8	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0134718_8	TIGR02646	N/A	N/A	N/A	N/A
Pfam	UHGV-0134718_9	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0134718_9	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0134718_10	phrog_9	241.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0134718_10	UniRef90_R5EM34	961.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0134718_10	1121428.DESHY_20134___1	536.0	0	Phage Terminase	N/A
Pfam	UHGV-0134718_10	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0134718_10	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0134718_10	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0134718_10	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0134718_11	phrog_12	161.9	0	portal protein	head and packaging
UniRef90	UHGV-0134718_11	UniRef90_R5ENV9	414.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0134718_11	1121423.JONT01000042_gene1421	347.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0134718_11	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0134718_11	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0134718_11	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0134718_11	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0134718_12	K06904	151.7	5.60519e-45	N/A	N/A
PHROG	UHGV-0134718_12	phrog_80	169.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0134718_12	UniRef90_R5EAP6	208.0	0	Phage prohead protease HK97 family	N/A
eggNOG-mapper	UHGV-0134718_12	33035.JPJF01000039_gene272	192.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0134718_12	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0134718_12	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0134718_12	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0134718_12	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0134718_13	phrog_10	84.7	1.1e-24	major head protein	head and packaging
UniRef90	UHGV-0134718_13	UniRef90_A0A1C5W5F9	199.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-0134718_13	324057.Pjdr2_1543	97.1	3.87e-19	Phage capsid family	N/A
Pfam	UHGV-0134718_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0134718_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0134718_13	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0134718_14	phrog_2550	58.2	1.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0134718_14	588581.Cpap_1271	65.5	0.00000000000104	N/A	N/A
structural_annotation	UHGV-0134718_15	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0134718_16	PF11367,MF_00632	N/A	N/A	N/A	N/A
PHROG	UHGV-0134718_17	phrog_5	54.1	0.0000000000000044	tail completion or Neck1 protein	connector
eggNOG-mapper	UHGV-0134718_17	1203606.HMPREF1526_00974	68.6	0.00000000000101	N/A	N/A
Pfam	UHGV-0134718_17	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0134718_17	TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0134718_18	phrog_88	49.6	0.000000000000077	major tail protein	tail
UniRef90	UHGV-0134718_18	UniRef90_R5EB96	165.0	0	Phage major tail protein phi13 family	N/A
eggNOG-mapper	UHGV-0134718_18	349161.Dred_2600	59.7	0.000000126	N/A	N/A
structural_annotation	UHGV-0134718_18	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0134718_19	PF11836,TIGR01674	N/A	N/A	N/A	N/A
PHROG	UHGV-0134718_21	phrog_10613	96.6	3.3e-28	tail length tape measure protein	tail
COG	UHGV-0134718_21	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0134718_22	phrog_33	55.7	0.0000000000000014	distal tail protein Dit	tail
UniRef90	UHGV-0134718_22	UniRef90_A0A173Z1X4	168.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0134718_22	1123263.AUKY01000068_gene490	102.0	1.82e-23	tail component	N/A
COG	UHGV-0134718_22	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0134718_22	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0134718_23	phrog_1067	180.0	0	minor head protein	head and packaging
UniRef90	UHGV-0134718_23	UniRef90_A0A1C6H6B4	276.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0134718_23	1123263.AUKY01000068_gene489	223.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0134718_23	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0134718_23	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0134718_23	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0134718_23	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0134718_24	PF00041,NF010681,COG3979	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0134718_25	1160721.RBI_I01572	65.5	0.00000000209	N/A	N/A
structural_annotation	UHGV-0134718_26	PF21253,PF07210,NF038128,TIGR03000,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-0134718_28	phrog_30034	86.5	4.1e-25	N/A	unknown function
UniRef90	UHGV-0134718_28	UniRef90_R6ELD6	74.3	0.0000000000000339	Glycosyl hydrolase family 18 family protein	N/A
eggNOG-mapper	UHGV-0134718_28	1122971.BAME01000151_gene6566	95.9	1.49e-22	N/A	N/A
KOfam	UHGV-0134718_29	K21471	40.8	0.000000000042	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-0134718_29	phrog_14030	157.9	0	N/A	unknown function
UniRef90	UHGV-0134718_29	UniRef90_A0A564WYC7	191.0	0	Peptidoglycan binding domain protein	N/A
eggNOG-mapper	UHGV-0134718_29	457412.RSAG_02810	191.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0134718_29	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0134718_29	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0134718_29	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0134718_29	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
UniRef90	UHGV-0134718_30	UniRef90_A0A3E2WI44	113.0	6.45e-31	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0134718_30	742740.HMPREF9474_03521	103.0	4.9e-28	N/A	N/A
PHROG	UHGV-0134718_31	phrog_1129	64.3	1.5e-18	holin	lysis
UniRef90	UHGV-0134718_31	UniRef90_UPI0010313BC1	128.0	6.2e-37	phage holin family protein	N/A
eggNOG-mapper	UHGV-0134718_31	1226322.HMPREF1545_00069	127.0	1.71e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0134718_31	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0134718_31	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0134718_32	K07684	41.9	0.000000000019	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	N/A
UniRef90	UHGV-0134718_32	UniRef90_A0A8D9PDT6	58.9	0.00000000145	Transcriptional regulatory protein	N/A
Pfam	UHGV-0134718_32	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0134718_32	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-0134718_33	PF20477,NF033819	N/A	N/A	N/A	N/A
PHROG	UHGV-0134718_34	phrog_22984	41.8	0.000000000018	N/A	unknown function
structural_annotation	UHGV-0134718_36	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0134718_37	1378168.N510_03079	56.2	0.000000322	N/A	N/A
KOfam	UHGV-0134718_41	K14059	131.2	1.2e-38	int; integrase	N/A
PHROG	UHGV-0134718_41	phrog_1	100.4	2.4e-29	integrase	integration and excision
UniRef90	UHGV-0134718_41	UniRef90_A0A3D1VH24	216.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0134718_41	397290.C810_00628	183.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0134718_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0134718_41	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0134718_41	PF00589,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0134718	Yes	26,368	57	77	1