vOTU vOTU-146302

vOTU: vOTU-146302

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-146302
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00005 → vGENUS-00292 → vOTU-146302
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Host range breadth	Family
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1420880
Biosample ID	SAMN02333946
Genome length (bp)	34,118 bps
CheckV completeness	81.45% (Medium-quality)
CDS count	60
CDS density	92.12%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	163	Host agreement	94.48
PHIST-predicted host lineage	Bacteria → Firmicutes_A	Total connections	2	Host agreement	50

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 81.45)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1420880_1	phrog_32744	481.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1420880_1	1120998.AUFC01000030_gene2247	223.0	0	N/A	N/A
structural_annotation	UHGV-1420880_1	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_2	phrog_1194	55.5	9.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-1420880_2	1226322.HMPREF1545_00060	209.0	0	N/A	N/A
structural_annotation	UHGV-1420880_2	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_3	phrog_1535	91.4	2.5e-38	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1420880_3	693746.OBV_18190	243.0	0	domain protein	N/A
COG	UHGV-1420880_3	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1420880_3	PF05546,TIGR02559	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1420880_4	PF02883,MF_00791,TIGR04209,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_5	phrog_706	114.4	9.4e-34	N/A	unknown function
UniRef90	UHGV-1420880_5	UniRef90_UPI000682A80B	235.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1420880_5	693746.OBV_18170	227.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1420880_5	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1420880_5	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_6	phrog_11299	74.6	1.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-1420880_6	693746.OBV_18160	191.0	0	N/A	N/A
structural_annotation	UHGV-1420880_6	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_7	phrog_3099	92.3	5.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-1420880_7	1226322.HMPREF1545_00056	252.0	0	N/A	N/A
structural_annotation	UHGV-1420880_7	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_8	phrog_3266	52.3	0.0000000000000079	tail completion	connector
eggNOG-mapper	UHGV-1420880_8	1232443.BAIA02000078_gene24	137.0	1.75e-39	N/A	N/A
structural_annotation	UHGV-1420880_8	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_9	phrog_556	74.7	1e-21	minor head protein	head and packaging
UniRef90	UHGV-1420880_9	UniRef90_UPI00195E1497	160.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1420880_9	1226322.HMPREF1545_00054	122.0	6.19e-34	Minor capsid protein	N/A
Pfam	UHGV-1420880_9	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1420880_9	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_10	phrog_3366	84.3	1.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-1420880_10	1226322.HMPREF1545_00053	158.0	0	N/A	N/A
structural_annotation	UHGV-1420880_10	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_11	phrog_541	101.4	6.2e-30	head-tail adaptor	connector
eggNOG-mapper	UHGV-1420880_11	642492.Clole_0822	73.6	0.00000000000000777	N/A	N/A
PHROG	UHGV-1420880_12	phrog_212	254.2	0	major head protein	head and packaging
UniRef90	UHGV-1420880_12	UniRef90_A0A354MR33	521.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1420880_12	935836.JAEL01000021_gene1494	340.0	0	N/A	N/A
structural_annotation	UHGV-1420880_12	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_13	phrog_194	91.4	1.3e-26	head scaffolding protein	head and packaging
UniRef90	UHGV-1420880_13	UniRef90_A0A2Z4Q9Y8	146.0	4.97993e-41	Minor structural protein	N/A
eggNOG-mapper	UHGV-1420880_13	1232443.BAIA02000078_gene31	99.0	1.41e-23	N/A	N/A
Pfam	UHGV-1420880_13	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1420880_13	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_14	phrog_581	273.5	0	minor head protein	head and packaging
UniRef90	UHGV-1420880_14	UniRef90_A0A1C5N7V1	508.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1420880_14	1226322.HMPREF1545_00046	335.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1420880_14	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1420880_14	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1420880_14	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_15	phrog_533	386.5	0	portal protein	head and packaging
UniRef90	UHGV-1420880_15	UniRef90_A0A2U1BEK0	709.0	0	A118 family predicted phage portal protein	N/A
eggNOG-mapper	UHGV-1420880_15	1226322.HMPREF1545_00044	682.0	0	N/A	N/A
Pfam	UHGV-1420880_15	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1420880_15	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1420880_16	K06909	384.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1420880_16	phrog_3717	162.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1420880_16	UniRef90_A0A2U1BEH4	746.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1420880_16	33035.JPJF01000106_gene3136	466.0	0	Terminase small subunit	N/A
Pfam	UHGV-1420880_16	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1420880_16	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1420880_16	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1420880_16	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1420880_16	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_17	phrog_606	85.3	6.9e-25	terminase small subunit	head and packaging
UniRef90	UHGV-1420880_17	UniRef90_UPI00195648BB	164.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1420880_17	397290.C810_05185	136.0	5.1e-39	DNA-packaging protein gp3	N/A
Pfam	UHGV-1420880_17	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1420880_17	PF16677	N/A	N/A	N/A	N/A
Pfam	UHGV-1420880_18	PF04297	N/A	N/A	Putative helix-turn-helix protein, YlxM / p13 like	UPF0122
COG	UHGV-1420880_18	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1420880_19	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1420880_20	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_23	phrog_190	126.3	2.1e-37	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1420880_23	UniRef90_UPI0005288167	124.0	1.91e-34	N/A	N/A
eggNOG-mapper	UHGV-1420880_23	1121105.ATXL01000006_gene1363	97.8	2.71e-24	N/A	N/A
Pfam	UHGV-1420880_23	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1420880_23	PF06356	N/A	N/A	N/A	N/A
UniRef90	UHGV-1420880_26	UniRef90_A0A8D9PDT5	72.8	0.0000000000000185	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-1420880_27	phrog_599	45.7	0.0000000000014	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1420880_27	UniRef90_A0A845MWR1	97.1	2.41e-25	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1420880_27	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-1420880_27	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
COG	UHGV-1420880_27	COG1601	N/A	N/A	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	N/A
structural_annotation	UHGV-1420880_27	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_28	phrog_3136	135.9	1.10001e-40	N/A	unknown function
UniRef90	UHGV-1420880_28	UniRef90_A0A3D0HBD2	141.0	2.71e-39	ASCH domain-containing protein	N/A
COG	UHGV-1420880_28	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1420880_28	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_29	phrog_8684	68.9	8.8e-22	N/A	unknown function
UniRef90	UHGV-1420880_29	UniRef90_A0A1C6K9I9	129.0	1.27e-35	YopX protein	N/A
eggNOG-mapper	UHGV-1420880_29	1226322.HMPREF1545_00036	67.4	0.00000000000202	YopX protein	N/A
Pfam	UHGV-1420880_29	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1420880_29	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1420880_30	PF10781	N/A	N/A	N/A	N/A
KOfam	UHGV-1420880_32	K00558	95.0	1e-32	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1420880_32	phrog_17284	112.7	0	N/A	unknown function
UniRef90	UHGV-1420880_32	UniRef90_A0A1Q6JM75	618.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1420880_32	1235797.C816_01614	449.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1420880_32	oMTase_00023	42.2	6.6e-19	orphan methyltransferase	RM
Pfam	UHGV-1420880_32	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1420880_32	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1420880_32	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1420880_33	K02315	133.2	2.7e-39	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1420880_33	phrog_50	130.7	1.3e-38	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1420880_33	UniRef90_A0A810Q3X8	296.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-1420880_33	1507.HMPREF0262_00302	188.0	0	Bacterial dnaA protein	N/A
Pfam	UHGV-1420880_33	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1420880_33	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1420880_33	PF01695,MF_01919,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_34	phrog_16304	72.7	5.9e-21	N/A	unknown function
UniRef90	UHGV-1420880_34	UniRef90_A0A810PZI8	181.0	0	N/A	N/A
eggNOG-mapper	UHGV-1420880_34	1226322.HMPREF1545_00016	63.9	0.00000000109	HNH endonuclease	N/A
Pfam	UHGV-1420880_34	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1420880_34	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1420880_34	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1420880_36	K03111	140.5	1.79997e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1420880_36	phrog_44	131.9	4.7e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1420880_36	UniRef90_R5SNS5	158.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1420880_36	1519439.JPJG01000082_gene432	152.0	1.4013e-45	Single-strand binding protein family	N/A
Pfam	UHGV-1420880_36	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1420880_36	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1420880_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1420880_36	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1420880_36	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1420880_37	K07451	46.6	0.00000000000062	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1420880_37	phrog_7370	64.4	1.4e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1420880_37	UniRef90_R5XZW2	131.0	1.15e-37	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-1420880_37	1123058.KB894266_gene1536	56.6	0.000000066	HNH endonuclease	N/A
Pfam	UHGV-1420880_37	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1420880_37	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1420880_38	phrog_72	60.1	3.5e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1420880_38	UniRef90_A0A8D9PDS2	144.0	8.38999e-41	NinB protein	N/A
eggNOG-mapper	UHGV-1420880_38	445972.ANACOL_01825	140.0	5.92e-40	N/A	N/A
structural_annotation	UHGV-1420880_38	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_39	phrog_7838	148.9	2.8026e-44	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1420880_39	UniRef90_A0A8D9UGW3	267.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1420880_39	742767.HMPREF9456_02052	183.0	0	N/A	N/A
structural_annotation	UHGV-1420880_39	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1420880_42	PF21715,MF_01804,TIGR00281,COG1386	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_43	phrog_22529	110.3	1e-32	N/A	unknown function
UniRef90	UHGV-1420880_43	UniRef90_A0A352RPR8	154.0	7.00649e-45	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-1420880_43	411461.DORFOR_01578	116.0	1.06e-27	3D domain	N/A
Pfam	UHGV-1420880_43	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1420880_43	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1420880_43	PF06725,MF_02071,NF040670,COG3584	N/A	N/A	N/A	N/A
KOfam	UHGV-1420880_46	K22300	41.1	0.000000000033	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-1420880_46	UniRef90_A0A3D3Y6C1	72.8	0.00000000000000112	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1420880_46	862970.SAIN_1280	55.5	0.00000000702	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-1420880_46	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1420880_46	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1420880_46	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1420880_47	PF01381,NF007257,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1420880_48	PF03885	N/A	N/A	N/A	N/A
UniRef90	UHGV-1420880_52	UniRef90_A0A810PZB1	70.9	0.00000000000157	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1420880_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1420880_52	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1420880_52	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1420880_53	K06400	268.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1420880_53	phrog_95	286.4	0	integrase	integration and excision
UniRef90	UHGV-1420880_53	UniRef90_A0A3A9I9T1	369.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1420880_53	357809.Cphy_2997	291.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-1420880_53	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1420880_53	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1420880_53	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1420880_53	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1420880_54	1232443.BAIA02000078_gene6	54.7	0.0000000588	N/A	N/A
PHROG	UHGV-1420880_55	phrog_28802	51.2	0.0000000000000019	N/A	unknown function
PHROG	UHGV-1420880_56	phrog_20016	180.3	0	N/A	unknown function
UniRef90	UHGV-1420880_56	UniRef90_A0A285PT46	189.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1420880_56	397290.C810_05214	159.0	0	N/A	N/A
structural_annotation	UHGV-1420880_56	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_58	phrog_16490	46.5	0.00000000000072	N/A	unknown function
eggNOG-mapper	UHGV-1420880_58	658655.HMPREF0988_00917	91.7	2.51e-21	N/A	N/A
UniRef90	UHGV-1420880_59	UniRef90_R7BK61	305.0	0	NUMOD1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1420880_59	1499689.CCNN01000004_gene307	72.4	0.00000000000611	Intron-encoded nuclease repeat 2	N/A
Pfam	UHGV-1420880_59	PF20987	N/A	N/A	Intron-encoded endonuclease 1, DNA-binding domain	I-TevI_DNA-bd
structural_annotation	UHGV-1420880_59	PF20987,PF15653,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-1420880_60	phrog_16490	40.1	0.000000000017	N/A	unknown function
eggNOG-mapper	UHGV-1420880_60	1235790.C805_00060	63.5	0.000000000889	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1420880	Yes	34,118	53	81	1