vOTU vOTU-146394

vOTU: vOTU-146394

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-146394
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-00538 → vGENUS-01060 → vOTU-146394
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0173392
Biosample ID	SAMN09781791
Genome length (bp)	42,525 bps
CheckV completeness	69.83% (Medium-quality)
CDS count	74
CDS density	88.68%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	119	Host agreement	97.48
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 69.83)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0173392_2	phrog_9804	143.0	1.80067e-42	N/A	unknown function
UniRef90	UHGV-0173392_2	UniRef90_A0A1C5LKA4	165.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0173392_2	903814.ELI_3550	130.0	5.42e-36	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0173392_2	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0173392_2	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0173392_3	phrog_1163	225.3	0	N/A	unknown function
UniRef90	UHGV-0173392_3	UniRef90_U4QYU3	243.0	0	DNA replication protein	N/A
eggNOG-mapper	UHGV-0173392_3	278197.PEPE_1019	215.0	0	DnaD domain protein	N/A
Pfam	UHGV-0173392_3	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0173392_3	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0173392_3	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0173392_3	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0173392_5	K03111	133.5	2.6e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0173392_5	phrog_44	133.3	1.8e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173392_5	UniRef90_A0A173R0S1	177.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0173392_5	471875.RUMLAC_01617	179.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0173392_5	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0173392_5	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0173392_5	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0173392_5	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0173392_5	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0173392_6	phrog_1682	50.6	0.000000000000032	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173392_6	UniRef90_R5GFL1	82.4	1.09e-17	Putative prophage Lp2 protein 24	N/A
eggNOG-mapper	UHGV-0173392_6	697281.Mahau_0558	76.3	4.41e-16	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0173392_6	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0173392_6	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0173392_7	phrog_3657	324.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0173392_7	1121864.OMO_02139	230.0	0	N/A	N/A
KOfam	UHGV-0173392_8	K10906	93.4	6.8e-34	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-0173392_8	phrog_412	269.8	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173392_8	UniRef90_A0A3D3U8P6	271.0	0	N/A	N/A
eggNOG-mapper	UHGV-0173392_8	1454004.AW11_02382	179.0	0	N/A	N/A
Pfam	UHGV-0173392_8	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0173392_8	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0173392_8	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0173392_11	phrog_4292	71.1	1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0173392_11	411460.RUMTOR_01375	81.3	4.85e-20	N/A	N/A
structural_annotation	UHGV-0173392_13	PF20037,COG3212	N/A	N/A	N/A	N/A
PHROG	UHGV-0173392_14	phrog_463	222.6	0	anti-repressor	transcription regulation
UniRef90	UHGV-0173392_14	UniRef90_UPI001C02AC2E	376.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0173392_14	411490.ANACAC_00813	258.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0173392_14	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0173392_14	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0173392_14	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0173392_14	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173392_15	PF12729	N/A	N/A	N/A	N/A
KOfam	UHGV-0173392_17	K18830	65.7	2.7e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0173392_17	phrog_2967	60.1	4.7e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0173392_17	UniRef90_UPI001C01C52A	158.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0173392_17	445972.ANACOL_03315	120.0	1.57e-33	N/A	N/A
Pfam	UHGV-0173392_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0173392_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0173392_17	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173392_19	UniRef90_A0A3D5TFB0	135.0	1.99e-36	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0173392_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0173392_19	COG1395	N/A	N/A	Predicted transcriptional regulator	N/A
structural_annotation	UHGV-0173392_19	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0173392_20	K07273	178.0	0	acm; lysozyme	N/A
PHROG	UHGV-0173392_20	phrog_291	135.5	4.7e-40	endolysin	lysis
UniRef90	UHGV-0173392_20	UniRef90_D4M5A7	701.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0173392_20	33035.JPJF01000043_gene994	196.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0173392_20	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0173392_20	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0173392_20	PF01183,NF003627,COG3757,COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173392_21	PF13384,NF001074,COG3677	N/A	N/A	N/A	N/A
PHROG	UHGV-0173392_22	phrog_1129	83.7	1.2e-24	holin	lysis
UniRef90	UHGV-0173392_22	UniRef90_A0A893W7Y5	144.0	5.08671e-43	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0173392_22	1121115.AXVN01000006_gene2171	142.0	3.69943e-43	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0173392_22	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0173392_22	PF16079	N/A	N/A	N/A	N/A
PHROG	UHGV-0173392_23	phrog_4105	98.4	4.4e-29	N/A	unknown function
eggNOG-mapper	UHGV-0173392_23	411459.RUMOBE_00911	160.0	0	N/A	N/A
UniRef90	UHGV-0173392_24	UniRef90_A0A2V2D4A1	55.8	0.0000000034	XkdX family protein	N/A
eggNOG-mapper	UHGV-0173392_24	411468.CLOSCI_01507	48.9	0.00000031	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0173392_24	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0173392_24	PF09693,TIGR01669	N/A	N/A	N/A	N/A
KOfam	UHGV-0173392_26	K00986	69.4	5.5e-20	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0173392_26	phrog_1423	147.5	8.96831e-44	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173392_26	UniRef90_A0A1C5N0E2	593.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
eggNOG-mapper	UHGV-0173392_26	33035.JPJF01000043_gene1000	247.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0173392_26	icity0040	52.7	0.0000000000000034	RT (reverse transcriptase)	CRISPR-CAS
COG	UHGV-0173392_26	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0173392_26	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0173392_27	phrog_17147	243.6	0	N/A	unknown function
UniRef90	UHGV-0173392_27	UniRef90_A0A1M6MWL0	182.0	0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	N/A
eggNOG-mapper	UHGV-0173392_27	33035.JPJF01000043_gene1001	191.0	0	N/A	N/A
eggNOG-mapper	UHGV-0173392_30	411462.DORLON_00771	161.0	3.36312e-44	N/A	N/A
structural_annotation	UHGV-0173392_30	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0173392_31	phrog_19695	61.5	2.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0173392_31	478749.BRYFOR_08558	85.1	3.76e-20	N/A	N/A
structural_annotation	UHGV-0173392_31	PF19714	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173392_32	585501.HMPREF6123_0821	52.0	0.00000368	N/A	N/A
PHROG	UHGV-0173392_33	phrog_18725	46.1	0.00000000000095	N/A	unknown function
eggNOG-mapper	UHGV-0173392_33	1235800.C819_00473	52.8	0.00000297	N/A	N/A
PHROG	UHGV-0173392_34	phrog_13879	267.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0173392_34	742740.HMPREF9474_03516	380.0	0	N/A	N/A
structural_annotation	UHGV-0173392_34	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0173392_35	phrog_1194	79.5	3.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0173392_35	742740.HMPREF9474_03515	127.0	2.44e-36	N/A	N/A
structural_annotation	UHGV-0173392_35	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0173392_36	phrog_167	321.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0173392_36	UniRef90_A0A415D594	641.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0173392_36	397290.C810_01419	360.0	0	Transglycosylase SLT domain	N/A
Pfam	UHGV-0173392_36	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0173392_36	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-0173392_36	NF012014	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173392_38	UniRef90_UPI001D0975F6	114.0	2.02e-30	N/A	N/A
structural_annotation	UHGV-0173392_38	PF16478	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173392_39	UniRef90_A0A8D9PGN2	183.0	0	Major tail protein	N/A
structural_annotation	UHGV-0173392_39	PF16463,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173392_40	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173392_41	1298920.KI911353_gene2654	183.0	0	N/A	N/A
structural_annotation	UHGV-0173392_42	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0173392_43	phrog_1129	72.4	4.2e-21	holin	lysis
UniRef90	UHGV-0173392_43	UniRef90_A0A8D9UII9	133.0	7.44e-39	Holin	N/A
eggNOG-mapper	UHGV-0173392_43	411461.DORFOR_00721	97.4	2.45e-25	N/A	N/A
Pfam	UHGV-0173392_43	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0173392_43	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0173392_44	phrog_1863	55.3	4.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0173392_44	1232452.BAIB02000007_gene1606	70.1	0.0000000000000442	N/A	N/A
UniRef90	UHGV-0173392_45	UniRef90_A0A3D4KY33	54.3	0.000000299	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0173392_45	1298920.KI911353_gene2658	50.1	0.00000248	N/A	N/A
UniRef90	UHGV-0173392_46	UniRef90_A0A416G2T8	53.5	0.000000183	Rho_N domain-containing protein	N/A
structural_annotation	UHGV-0173392_46	PF21169	N/A	N/A	N/A	N/A
PHROG	UHGV-0173392_47	phrog_29	164.3	0	major head protein	head and packaging
UniRef90	UHGV-0173392_47	UniRef90_A0A1C5WIT9	594.0	0	Phage major capsid protein E	N/A
eggNOG-mapper	UHGV-0173392_47	1347368.HG964404_gene4993	157.0	3.00999e-42	Phage major capsid protein E	N/A
Pfam	UHGV-0173392_47	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0173392_47	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0173392_48	phrog_909	79.3	3.8e-23	major head protein	head and packaging
UniRef90	UHGV-0173392_48	UniRef90_R7BGI8	196.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0173392_48	1536772.R70723_06665	57.0	0.00000000561	N/A	N/A
UniRef90	UHGV-0173392_49	UniRef90_R6C0B6	64.7	0.00000000151	Phage capsid scaffolding protein	N/A
PHROG	UHGV-0173392_51	phrog_64	150.0	7.00649e-45	portal protein	head and packaging
UniRef90	UHGV-0173392_51	UniRef90_R6CA99	555.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-0173392_51	1298920.KI911353_gene2663	416.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0173392_51	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0173392_51	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0173392_52	phrog_36	57.9	2.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0173392_52	UniRef90_A0A7C6D6F2	93.2	1.34e-21	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0173392_52	742741.HMPREF9475_02386	72.4	0.0000000000000313	sigma factor activity	N/A
COG	UHGV-0173392_52	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0173392_52	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0173392_53	phrog_38	174.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0173392_53	UniRef90_A0A318EQM2	516.0	0	Putative phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-0173392_53	1123263.AUKY01000015_gene1608	327.0	0	chromosome segregation	N/A
COG	UHGV-0173392_53	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173392_53	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173392_55	PF05225,COG2886	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173392_61	PF07073,MF_00436,NF033216	N/A	N/A	N/A	N/A
PHROG	UHGV-0173392_63	phrog_1233	81.9	9.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0173392_63	411490.ANACAC_00786	81.3	4.64e-18	N/A	N/A
structural_annotation	UHGV-0173392_63	PF13058	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173392_65	397290.C810_01353	169.0	0	N/A	N/A
eggNOG-mapper	UHGV-0173392_67	97139.C824_03111	53.1	0.00000000511	N/A	N/A
KOfam	UHGV-0173392_68	K07727	44.5	0.0000000000041	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0173392_68	UniRef90_A0A3R6B3D9	119.0	1.67e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0173392_68	394503.Ccel_3173	59.3	0.0000000000869	N/A	N/A
Pfam	UHGV-0173392_68	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0173392_68	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0173392_71	K03466	211.5	0	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-0173392_71	phrog_1358	196.8	0	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0173392_71	UniRef90_A0A1C5UE43	328.0	0	Stage III sporulation protein E	N/A
eggNOG-mapper	UHGV-0173392_71	1007104.SUS17_2040	152.0	3.89e-39	DNA segregation ATPase FtsK SpoIIIE	N/A
PADLOC	UHGV-0173392_71	SspH_00004	98.9	4.3e-29	SspH	SSP
Pfam	UHGV-0173392_71	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
COG	UHGV-0173392_71	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
structural_annotation	UHGV-0173392_71	PF01580,MF_00350,TIGR03925,COG0433	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0173392	Yes	42,525	39	70	1