vOTU vOTU-146446

vOTU: vOTU-146446

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-146446
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00316 → vOTU-146446
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0184813
Biosample ID	SAMN09781771
Genome length (bp)	21,163 bps
CheckV completeness	54.75% (Medium-quality)
CDS count	38
CDS density	91.14%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	89	Host agreement	96.63
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 54.75)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0184813_3	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0184813_4	phrog_1419	54.9	5.7e-16	tail protein	tail
UniRef90	UHGV-0184813_4	UniRef90_UPI0018835F0C	214.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0184813_4	476272.RUMHYD_00002	106.0	1.62e-21	N/A	N/A
KOfam	UHGV-0184813_6	K19304	124.5	1.1e-36	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0184813_6	phrog_10030	103.8	6.7e-31	tail length tape measure protein	tail
UniRef90	UHGV-0184813_6	UniRef90_A0A3D1PRD1	322.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0184813_6	1382304.JNIL01000001_gene2694	100.0	8.48e-22	G5	N/A
Pfam	UHGV-0184813_6	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0184813_6	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0184813_6	PF01551,NF040883	N/A	N/A	N/A	N/A
PHROG	UHGV-0184813_7	phrog_4105	100.5	9.8e-30	N/A	unknown function
eggNOG-mapper	UHGV-0184813_7	657322.FPR_27220	147.0	1.12104e-44	N/A	N/A
PHROG	UHGV-0184813_8	phrog_1129	64.1	1.6e-18	holin	lysis
UniRef90	UHGV-0184813_8	UniRef90_A0A367FT42	168.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0184813_8	693746.OBV_13280	113.0	1.24e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0184813_8	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0184813_8	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0184813_9	K14059	193.8	0	int; integrase	N/A
PHROG	UHGV-0184813_9	phrog_1	195.9	0	integrase	integration and excision
UniRef90	UHGV-0184813_9	UniRef90_UPI00195B6EEA	459.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0184813_9	1235797.C816_00779	178.0	0	Phage integrase family	N/A
Pfam	UHGV-0184813_9	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0184813_9	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0184813_9	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0184813_9	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0184813_10	phrog_5978	158.9	0	N/A	unknown function
UniRef90	UHGV-0184813_10	UniRef90_A0A2N0UXR1	391.0	0	Adenosine monophosphate-protein transferase SoFic	N/A
eggNOG-mapper	UHGV-0184813_10	936375.HMPREF1152_1541	348.0	0	Filamentation induced by cAMP protein fic	N/A
Pfam	UHGV-0184813_10	PF02661	N/A	N/A	Fic/DOC family	Fic
COG	UHGV-0184813_10	COG3177	N/A	N/A	Fic family protein	N/A
structural_annotation	UHGV-0184813_10	PF07183,MF_01911,NF040876,COG3177	N/A	N/A	N/A	N/A
KOfam	UHGV-0184813_11	K01356	150.4	1.54143e-44	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0184813_11	phrog_4	125.3	5.8e-37	transcriptional repressor	transcription regulation
UniRef90	UHGV-0184813_11	UniRef90_A0A3A6CTP8	300.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0184813_11	411483.FAEPRAA2165_03041	153.0	4.2039e-44	N/A	N/A
Pfam	UHGV-0184813_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0184813_11	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0184813_11	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0184813_11	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-0184813_12	K07729	46.7	0.00000000000067	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0184813_12	UniRef90_A0A3A6CNZ7	107.0	2.57e-29	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0184813_12	1136177.KCA1_1058	50.4	0.000000187	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0184813_12	retron_type_VI_hth_cluster2_1	40.1	0.00000000011	N/A	Retron
Pfam	UHGV-0184813_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0184813_12	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0184813_12	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0184813_13	PF04325	N/A	N/A	N/A	N/A
PHROG	UHGV-0184813_16	phrog_17486	45.5	0.00000000000088	N/A	unknown function
PHROG	UHGV-0184813_19	phrog_4583	41.2	0.000000000023	transcriptional repressor	transcription regulation
UniRef90	UHGV-0184813_19	UniRef90_UPI000A0213FB	85.9	1.69e-20	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0184813_19	1680.BADO_1596	46.6	0.00000688	BetR domain	N/A
Pfam	UHGV-0184813_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0184813_19	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0184813_20	UniRef90_A0A367GHD7	160.0	0	HTH_17 domain-containing protein	N/A
Pfam	UHGV-0184813_20	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
PHROG	UHGV-0184813_24	phrog_21613	104.3	9.1e-31	N/A	unknown function
eggNOG-mapper	UHGV-0184813_24	1300143.CCAV010000006_gene4343	77.8	0.00000000000000164	N/A	N/A
PHROG	UHGV-0184813_25	phrog_1227	139.0	2.79993e-41	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184813_25	UniRef90_A0A7V6VUR0	115.0	3.44e-27	N/A	N/A
eggNOG-mapper	UHGV-0184813_25	861454.HMPREF9099_00347	106.0	1.14e-24	N/A	N/A
Pfam	UHGV-0184813_25	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0184813_25	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0184813_25	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
KOfam	UHGV-0184813_26	K03111	134.1	1.6e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0184813_26	phrog_44	142.6	2.20004e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184813_26	UniRef90_A0A1Q6T150	199.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0184813_26	411471.SUBVAR_04646	188.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0184813_26	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0184813_26	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0184813_26	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0184813_26	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0184813_26	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0184813_27	K02316	79.1	5.7e-23	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0184813_27	phrog_11992	111.0	1.3e-32	N/A	unknown function
UniRef90	UHGV-0184813_27	UniRef90_UPI001898AABD	104.0	6.97e-25	CHC2 zinc finger domain-containing protein	N/A
eggNOG-mapper	UHGV-0184813_27	1203606.HMPREF1526_01036	100.0	4.85e-22	N/A	N/A
PADLOC	UHGV-0184813_27	drt-cluster192	59.0	1.2e-16	DRT	DRT
Pfam	UHGV-0184813_27	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0184813_27	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
PHROG	UHGV-0184813_28	phrog_8841	438.8	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184813_28	UniRef90_UPI001897B4BF	562.0	0	N/A	N/A
eggNOG-mapper	UHGV-0184813_28	742738.HMPREF9460_02495	512.0	0	N/A	N/A
Pfam	UHGV-0184813_28	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0184813_28	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0184813_28	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0184813_28	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0184813_29	K17677	409.7	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0184813_29	phrog_16	243.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0184813_29	UniRef90_UPI001C63D655	720.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0184813_29	742738.HMPREF9460_02499	648.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0184813_29	mREase_IV_00005	119.6	1.1e-35	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0184813_29	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0184813_29	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0184813_29	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0184813_29	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0184813_30	phrog_824	139.0	1.6e-41	N/A	unknown function
UniRef90	UHGV-0184813_30	UniRef90_R7GUQ9	149.0	2.66247e-44	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0184813_30	742738.HMPREF9460_02501	134.0	5.87e-39	VRR_NUC	N/A
Pfam	UHGV-0184813_30	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0184813_30	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0184813_36	phrog_36	40.6	0.00000000004	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0184813_36	693746.OBV_25230	131.0	1.26e-37	N/A	N/A
NCBIFam	UHGV-0184813_36	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0184813_36	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0184813_37	phrog_1281	126.4	1.4e-37	N/A	unknown function
UniRef90	UHGV-0184813_37	UniRef90_UPI00130E304C	189.0	0	N/A	N/A
eggNOG-mapper	UHGV-0184813_37	1321815.HMPREF9193_02066	139.0	3.24e-40	N/A	N/A
Pfam	UHGV-0184813_37	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0184813_37	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0184813_37	PF13274,COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-0184813_38	phrog_5763	42.3	0.00000000000059	N/A	unknown function
eggNOG-mapper	UHGV-0184813_38	742740.HMPREF9474_04284	100.0	1.58e-21	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0184813	Yes	21,163	54	55	1