vOTU vOTU-146815

vOTU: vOTU-146815

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-146815
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00007 → vGENUS-17470 → vOTU-146815
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1503414
Biosample ID	N/A
Genome length (bp)	35,359 bps
CheckV completeness	61.32% (Medium-quality)
CDS count	72
CDS density	82.90%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	241	Host agreement	97.1
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 61.32)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1503414_5	phrog_8	53.2	0.0000000000000064	transcriptional regulator	transcription regulation
UniRef90	UHGV-1503414_5	UniRef90_A0A373XY93	95.9	2.92e-23	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1503414_5	665956.HMPREF1032_02614	63.2	0.0000000000243	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1503414_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1503414_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1503414_6	UniRef90_A0A7X1LWA7	82.4	3.75e-19	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1503414_6	428125.CLOLEP_02737	60.5	0.0000000000289	N/A	N/A
structural_annotation	UHGV-1503414_6	TIGR03070	N/A	N/A	N/A	N/A
KOfam	UHGV-1503414_7	K07741	63.6	6.9e-18	antB; anti-repressor protein	N/A
PHROG	UHGV-1503414_7	phrog_130	184.0	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1503414_7	UniRef90_R5ANG2	190.0	0	Phage antirepressor protein	N/A
eggNOG-mapper	UHGV-1503414_7	563192.HMPREF0179_02955	156.0	2.8026e-45	BRO family, N-terminal domain	N/A
Pfam	UHGV-1503414_7	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1503414_7	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1503414_7	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1503414_7	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
KOfam	UHGV-1503414_8	K07741	51.9	0.000000000000026	antB; anti-repressor protein	N/A
PHROG	UHGV-1503414_8	phrog_15968	128.0	1.9e-38	anti-repressor	transcription regulation
UniRef90	UHGV-1503414_8	UniRef90_A0A644ZPU6	116.0	2.02e-31	ANT domain-containing protein	N/A
eggNOG-mapper	UHGV-1503414_8	386415.NT01CX_2199	119.0	2.41e-32	Phage antirepressor protein	N/A
Pfam	UHGV-1503414_8	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1503414_8	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1503414_9	PF10922	N/A	N/A	N/A	N/A
Pfam	UHGV-1503414_11	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1503414_11	PF13443,TIGR02684,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1503414_12	PF14143	N/A	N/A	N/A	N/A
COG	UHGV-1503414_13	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-1503414_13	PF04606,NF007241,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-1503414_14	phrog_38771	64.1	1.5e-18	N/A	unknown function
Pfam	UHGV-1503414_15	PF13451	N/A	N/A	Probable zinc-ribbon domain	zf-trcl
structural_annotation	UHGV-1503414_15	PF13451	N/A	N/A	N/A	N/A
PHROG	UHGV-1503414_16	phrog_155	153.0	1.4013e-45	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1503414_16	UniRef90_E2ZNS9	308.0	0	Erf family protein	N/A
eggNOG-mapper	UHGV-1503414_16	748224.HMPREF9436_03360	308.0	0	ERF superfamily	N/A
Pfam	UHGV-1503414_16	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1503414_16	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1503414_17	K03111	112.9	4.6e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1503414_17	phrog_44	118.6	5.5e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1503414_17	UniRef90_A0A6N7TNV3	158.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1503414_17	748224.HMPREF9436_03359	153.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1503414_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1503414_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1503414_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1503414_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1503414_17	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1503414_18	phrog_28936	108.7	4.6e-32	N/A	unknown function
eggNOG-mapper	UHGV-1503414_18	573061.Clocel_3563	110.0	3.64e-28	N/A	N/A
PHROG	UHGV-1503414_19	phrog_16427	114.9	3.6e-35	DNA methyltransferase	other
UniRef90	UHGV-1503414_19	UniRef90_A0A6L5TDR3	325.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1503414_19	657322.FPR_26610	323.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
PADLOC	UHGV-1503414_19	oMTase_00004	40.9	2.9e-27	orphan methyltransferase	RM
Pfam	UHGV-1503414_19	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1503414_19	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1503414_19	PF00145,TIGR00675	N/A	N/A	N/A	N/A
PHROG	UHGV-1503414_21	phrog_3136	123.2	5.3e-37	N/A	unknown function
UniRef90	UHGV-1503414_21	UniRef90_A0A3D0HBD2	129.0	1.09e-34	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1503414_21	97139.C824_00742	56.6	0.000000108	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1503414_21	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1503414_21	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1503414_22	phrog_843	61.5	8.9e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1503414_22	UniRef90_UPI001159D907	114.0	9.15e-29	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1503414_22	929506.CbC4_1203	107.0	4.88e-27	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-1503414_22	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1503414_26	PF03465,COG2331	N/A	N/A	N/A	N/A
Pfam	UHGV-1503414_29	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1503414_30	PF16677	N/A	N/A	N/A	N/A
Pfam	UHGV-1503414_31	PF18912	N/A	N/A	Double zinc ribbon domain	DZR_2
UniRef90	UHGV-1503414_32	UniRef90_UPI0012DD33A2	305.0	0	restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-1503414_32	596329.HMPREF0631_0252	217.0	0	restriction endonuclease	N/A
PADLOC	UHGV-1503414_32	MTase_II_00176	165.4	0	Type II methyltransferase	RM
COG	UHGV-1503414_32	COG1002	N/A	N/A	Type II restriction/modification system, endonuclease and methylase domains	N/A
structural_annotation	UHGV-1503414_40	PF15731,TIGR03831	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1503414_42	NF041588	N/A	N/A	N/A	N/A
Pfam	UHGV-1503414_45	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1503414_45	PF14354,TIGR03655,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-1503414_46	phrog_15768	91.7	1.2e-27	N/A	unknown function
UniRef90	UHGV-1503414_46	UniRef90_A0A6N7WKT0	89.4	3.23e-18	N/A	N/A
eggNOG-mapper	UHGV-1503414_46	748224.HMPREF9436_03357	75.9	0.0000000000000798	N/A	N/A
Pfam	UHGV-1503414_46	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1503414_46	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1503414_47	K02314	206.3	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1503414_47	phrog_19	215.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1503414_47	UniRef90_UPI001CBC4B63	421.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1503414_47	1203606.HMPREF1526_01325	155.0	8.06e-40	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1503414_47	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1503414_47	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1503414_47	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1503414_49	phrog_1709	58.3	1.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-1503414_49	500632.CLONEX_01053	85.5	1.25e-20	N/A	N/A
PHROG	UHGV-1503414_54	phrog_434	45.4	0.0000000000012	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1503414_54	1519439.JPJG01000044_gene958	52.8	0.0000000697	N/A	N/A
Pfam	UHGV-1503414_58	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-1503414_58	PF12869,MF_00720,NF040991,COG4085	N/A	N/A	N/A	N/A
PHROG	UHGV-1503414_60	phrog_63	144.5	7.30076e-43	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1503414_60	UniRef90_UPI0005605D1F	190.0	0	phage regulatory protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-1503414_60	947981.E9LUT0_9CAUD	172.0	0	DNA binding	N/A
Pfam	UHGV-1503414_60	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-1503414_60	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-1503414_60	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
structural_annotation	UHGV-1503414_60	PF09669,PF03374,TIGR02681,COG3646,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1503414_61	PF19807,NF041793,COG4877	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1503414_63	PF20075	N/A	N/A	N/A	N/A
KOfam	UHGV-1503414_64	K14060	125.9	3.8e-37	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1503414_64	phrog_125	154.7	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1503414_64	UniRef90_A0A3D0LYX8	216.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-1503414_64	1410633.JHWR01000012_gene95	197.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1503414_64	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1503414_64	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1503414_64	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1503414_66	phrog_3675	77.9	8.3e-23	N/A	unknown function
UniRef90	UHGV-1503414_66	UniRef90_UPI001D08FCA4	108.0	1.29e-28	YjcQ family protein	N/A
eggNOG-mapper	UHGV-1503414_66	1235802.C823_04879	112.0	6.51e-31	YjcQ protein	N/A
Pfam	UHGV-1503414_66	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-1503414_66	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-1503414_67	phrog_38	157.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1503414_67	UniRef90_A0A3D4KYF7	974.0	0	DOD-type homing endonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-1503414_67	1232453.BAIF02000058_gene1623	393.0	0	TIGRFAM Phage	N/A
COG	UHGV-1503414_67	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1503414_67	PF05203,PF17289,MF_04147,MF_01420,NF033889,NF007072,COG5362,COG1372	N/A	N/A	N/A	N/A
PHROG	UHGV-1503414_69	phrog_64	148.2	4.06377e-44	portal protein	head and packaging
UniRef90	UHGV-1503414_69	UniRef90_A0A371ILT4	334.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1503414_69	1121866.AUGK01000003_gene1429	279.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1503414_69	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1503414_69	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1503414_72	phrog_29	179.5	0	major head protein	head and packaging
UniRef90	UHGV-1503414_72	UniRef90_A0A2Z4QBB4	370.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-1503414_72	1347368.HG964404_gene4993	261.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1503414_72	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1503414_72	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1503414	Yes	35,359	48	61	1