vOTU vOTU-146998

vOTU: vOTU-146998

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-146998
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium saudiense
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01144 → vGENUS-09503 → vOTU-146998
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium saudiense
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0149376
Biosample ID	SAMN04480496
Genome length (bp)	24,846 bps
CheckV completeness	61.59% (Medium-quality)
CDS count	36
CDS density	88.03%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium	Total connections	8	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium saudiense	Total connections	11	Host agreement	72.73

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 61.59)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0149376_1	phrog_22662	48.2	0.00000000000024	N/A	unknown function
KOfam	UHGV-0149376_4	K09777	94.8	5.7e-28	remA; extracellular matrix regulatory protein A	N/A
UniRef90	UHGV-0149376_4	UniRef90_UPI0004B7DE6E	149.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-0149376_4	1414720.CBYM010000001_gene689	149.0	0	N/A	N/A
Pfam	UHGV-0149376_4	PF04025	N/A	N/A	Extracellular matrix regulatory protein A-like	RemA-like
NCBIFam	UHGV-0149376_4	NF003315.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-0149376_4	COG2052	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0149376_4	PF04025,MF_01503,NF003315,COG2052	N/A	N/A	N/A	N/A
PHROG	UHGV-0149376_5	phrog_9628	130.4	6.9e-39	N/A	unknown function
UniRef90	UHGV-0149376_5	UniRef90_UPI001055F911	218.0	0	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-0149376_5	1414720.CBYM010000001_gene690	240.0	0	N/A	N/A
structural_annotation	UHGV-0149376_5	PF06056,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0149376_6	phrog_3928	42.0	0.000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0149376_6	1414720.CBYM010000040_gene1639	60.5	0.00000000000909	N/A	N/A
KOfam	UHGV-0149376_7	K04763	78.1	1.6e-22	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0149376_7	phrog_216	117.2	1.1e-34	integrase	integration and excision
UniRef90	UHGV-0149376_7	UniRef90_A0A1C6HZT4	415.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0149376_7	1294142.CINTURNW_1679	268.0	0	Phage integrase family	N/A
Pfam	UHGV-0149376_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0149376_7	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0149376_7	PF00589,MF_01807,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0149376_8	phrog_509	198.9	0	terminase small subunit	head and packaging
UniRef90	UHGV-0149376_8	UniRef90_A0A1C6HZX5	449.0	0	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0149376_8	1305708.M9Q2K7_9CAUD	192.0	0	N/A	N/A
Pfam	UHGV-0149376_8	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
NCBIFam	UHGV-0149376_8	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
structural_annotation	UHGV-0149376_8	NF040601,COG5484	N/A	N/A	N/A	N/A
KOfam	UHGV-0149376_9	K06909	368.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0149376_9	phrog_3717	164.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0149376_9	UniRef90_A0A1B8RSV7	803.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0149376_9	1280689.AUJC01000003_gene962	808.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0149376_9	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0149376_9	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0149376_9	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0149376_9	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0149376_9	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0149376_10	phrog_64	397.8	0	portal protein	head and packaging
UniRef90	UHGV-0149376_10	UniRef90_A0A1C6HYW3	899.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-0149376_10	1280689.AUJC01000003_gene963	592.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0149376_10	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0149376_10	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0149376_10	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0149376_11	phrog_115	280.1	0	minor head protein	head and packaging
UniRef90	UHGV-0149376_11	UniRef90_A0A1C6HZ48	702.0	0	NAD(+)--arginine ADP-ribosyltransferase EFV	N/A
eggNOG-mapper	UHGV-0149376_11	1209989.TepiRe1_1146	293.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0149376_11	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0149376_11	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0149376_11	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0149376_11	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0149376_13	phrog_774	68.1	1.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0149376_13	397290.C810_05225	83.2	8.98e-20	N/A	N/A
PHROG	UHGV-0149376_15	phrog_3392	182.1	0	N/A	unknown function
UniRef90	UHGV-0149376_15	UniRef90_A8AT45	154.0	4.2039e-45	Gp21	N/A
eggNOG-mapper	UHGV-0149376_15	1126950.G9J1S7_9CAUD	162.0	0	N/A	N/A
PHROG	UHGV-0149376_16	phrog_172	144.7	5.89947e-43	head scaffolding protein	head and packaging
UniRef90	UHGV-0149376_16	UniRef90_UPI0011593FAC	214.0	0	N/A	N/A
eggNOG-mapper	UHGV-0149376_16	1499683.CCFF01000014_gene3909	188.0	0	N/A	N/A
Pfam	UHGV-0149376_16	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0149376_16	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0149376_17	phrog_283	284.5	0	major head protein	head and packaging
UniRef90	UHGV-0149376_17	UniRef90_A0A1C6I0L7	711.0	0	p22 coat protein-gene protein 5	N/A
eggNOG-mapper	UHGV-0149376_17	1499683.CCFF01000014_gene3908	607.0	0	P22 coat protein - gene protein 5	N/A
Pfam	UHGV-0149376_17	PF11651	N/A	N/A	P22 coat protein - gene protein 5	P22_CoatProtein
structural_annotation	UHGV-0149376_17	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0149376_18	phrog_132	92.9	2.3e-27	head-tail adaptor	connector
UniRef90	UHGV-0149376_18	UniRef90_A0A1C6I0N0	205.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0149376_18	1280689.AUJC01000003_gene968	147.0	7.00649e-45	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0149376_18	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0149376_18	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0149376_19	phrog_2168	128.9	1.8e-38	N/A	unknown function
eggNOG-mapper	UHGV-0149376_19	1280692.AUJL01000025_gene2077	156.0	0	N/A	N/A
structural_annotation	UHGV-0149376_19	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0149376_20	phrog_5	77.5	2.6e-22	tail completion or Neck1 protein	connector
UniRef90	UHGV-0149376_20	UniRef90_A0A1C6I123	354.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0149376_20	562981.HMPREF0428_01816	81.6	5.33e-17	N/A	N/A
Pfam	UHGV-0149376_20	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0149376_20	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0149376_20	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0149376_21	phrog_78	61.8	1.4e-17	tail terminator	connector
eggNOG-mapper	UHGV-0149376_21	1499683.CCFF01000014_gene3904	129.0	4.77e-37	N/A	N/A
structural_annotation	UHGV-0149376_21	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0149376_22	phrog_158	83.8	3e-24	major tail protein	tail
UniRef90	UHGV-0149376_22	UniRef90_A0A1C6HZK6	266.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0149376_22	1499683.CCFF01000014_gene3903	176.0	0	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0149376_22	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0149376_22	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0149376_23	phrog_2066	73.3	3.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0149376_23	562981.HMPREF0428_01812	90.5	2.86e-21	N/A	N/A
PHROG	UHGV-0149376_24	phrog_1535	232.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0149376_24	UniRef90_A0A1C6I104	1361.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0149376_24	1499683.CCFF01000014_gene3900	446.0	0	phage tail tape measure protein	N/A
COG	UHGV-0149376_24	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-0149376_24	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0149376_25	phrog_1194	132.6	1.5e-39	N/A	unknown function
eggNOG-mapper	UHGV-0149376_25	1414720.CBYM010000002_gene561	234.0	0	N/A	N/A
Pfam	UHGV-0149376_25	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0149376_25	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0149376_26	phrog_6616	190.4	0	tail protein	tail
UniRef90	UHGV-0149376_26	UniRef90_UPI0007AE71C3	114.0	7.81e-23	gp58-like family protein	N/A
eggNOG-mapper	UHGV-0149376_26	1414720.CBYM010000002_gene560	1028.0	0	Phage minor structural protein	N/A
COG	UHGV-0149376_26	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0149376_26	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0149376_28	phrog_17334	74.8	1.2e-21	N/A	unknown function
UniRef90	UHGV-0149376_28	UniRef90_A0A174D4S5	862.0	0	Choline binding protein	N/A
eggNOG-mapper	UHGV-0149376_28	1414720.CBYM010000002_gene558	132.0	3.56e-30	GDSL-like Lipase/Acylhydrolase	N/A
Pfam	UHGV-0149376_28	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
COG	UHGV-0149376_28	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
PHROG	UHGV-0149376_29	phrog_689	41.9	0.000000000018	holin	lysis
UniRef90	UHGV-0149376_29	UniRef90_UPI0012BA1538	143.0	3.29305e-43	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0149376_29	1499683.CCFF01000005_gene83	82.8	5e-20	Haemolysin XhlA	N/A
Pfam	UHGV-0149376_29	PF10779	N/A	N/A	Haemolysin XhlA	XhlA
PHROG	UHGV-0149376_30	phrog_1129	82.3	3.7e-24	holin	lysis
UniRef90	UHGV-0149376_30	UniRef90_UPI0005917636	151.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0149376_30	1414720.CBYM010000002_gene553	172.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0149376_30	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0149376_30	PF16079	N/A	N/A	N/A	N/A
KOfam	UHGV-0149376_31	K01448	175.9	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0149376_31	phrog_435	167.3	0	endolysin	lysis
UniRef90	UHGV-0149376_31	UniRef90_A0A1C6H888	617.0	0	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0149376_31	1414720.CBYM010000005_gene1387	166.0	0	Sporulation related domain	N/A
Pfam	UHGV-0149376_31	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0149376_31	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
COG	UHGV-0149376_31	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
KOfam	UHGV-0149376_33	K04763	224.1	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0149376_33	phrog_1	189.5	0	integrase	integration and excision
UniRef90	UHGV-0149376_33	UniRef90_A0A1C6KN16	686.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0149376_33	536233.CLO_1819	273.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0149376_33	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0149376_33	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0149376_33	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0149376_33	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0149376_34	UniRef90_A0A8A2NY47	144.0	8.85621e-43	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0149376_34	1280692.AUJL01000043_gene3361	120.0	3e-34	N/A	N/A
KOfam	UHGV-0149376_35	K14060	150.4	1.54143e-44	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0149376_35	phrog_125	166.3	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149376_35	UniRef90_A0A174I9E9	358.0	0	DNA-invertase Hin	N/A
eggNOG-mapper	UHGV-0149376_35	1414720.CBYM010000017_gene3117	358.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0149376_35	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0149376_35	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0149376_35	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0149376_36	573061.Clocel_2949	49.3	0.00000138	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0149376	Yes	24,846	29	62	1