vOTU vOTU-147060

vOTU: vOTU-147060

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-147060
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00027 → vGENUS-01788 → vOTU-147060
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1422483
Biosample ID	N/A
Genome length (bp)	23,075 bps
CheckV completeness	62.63% (Medium-quality)
CDS count	32
CDS density	92.65%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	257	Host agreement	82.1
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	231	Host agreement	95.24

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 62.63)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1422483_1	phrog_199	73.4	2.7e-21	holin	lysis
UniRef90	UHGV-1422483_1	UniRef90_UPI00164BAF69	229.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1422483_1	1160721.RBI_I01565	156.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1422483_1	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1422483_1	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1422483_1	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1422483_1	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1422483_2	K01447	118.0	1.1e-34	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1422483_2	phrog_833	186.5	0	endolysin	lysis
UniRef90	UHGV-1422483_2	UniRef90_R6MSP5	636.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1422483_2	428125.CLOLEP_01782	184.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1422483_2	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1422483_2	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1422483_2	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1422483_4	PF01664	N/A	N/A	N/A	N/A
PHROG	UHGV-1422483_5	phrog_18190	73.3	1.9e-31	N/A	unknown function
UniRef90	UHGV-1422483_5	UniRef90_UPI001C01E293	68.2	0.0000000142	tail fiber domain-containing protein	N/A
structural_annotation	UHGV-1422483_5	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1422483_6	phrog_1194	62.4	6.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-1422483_6	397290.C810_05238	95.1	3.61e-23	N/A	N/A
Pfam	UHGV-1422483_6	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1422483_6	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1422483_7	phrog_1535	499.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1422483_7	UniRef90_A0A2N0ULX3	1155.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1422483_7	33035.JPJF01000093_gene2243	358.0	0	phage tail tape measure protein	N/A
COG	UHGV-1422483_7	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1422483_7	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1422483_8	phrog_1760	131.2	8.2e-39	anti-termination protein	transcription regulation
UniRef90	UHGV-1422483_8	UniRef90_UPI00189A9092	328.0	0	ORF6N domain-containing protein	N/A
eggNOG-mapper	UHGV-1422483_8	929506.CbC4_1188	137.0	1.1e-37	ORF6N domain	N/A
Pfam	UHGV-1422483_8	PF10543	N/A	N/A	ORF6N domain	ORF6N
COG	UHGV-1422483_8	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
PHROG	UHGV-1422483_12	phrog_706	130.6	1.1e-38	N/A	unknown function
UniRef90	UHGV-1422483_12	UniRef90_UPI001B3C82AE	253.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1422483_12	1160721.RBI_II00530	196.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1422483_12	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1422483_12	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1422483_13	phrog_11299	104.2	1.2e-30	N/A	unknown function
eggNOG-mapper	UHGV-1422483_13	1449050.JNLE01000003_gene3883	69.7	0.000000000000386	N/A	N/A
structural_annotation	UHGV-1422483_13	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1422483_14	phrog_3099	144.4	5.00264e-43	N/A	unknown function
eggNOG-mapper	UHGV-1422483_14	1160721.RBI_II00532	234.0	0	N/A	N/A
structural_annotation	UHGV-1422483_14	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1422483_15	phrog_3266	95.3	4.8e-28	tail completion	connector
eggNOG-mapper	UHGV-1422483_15	1449050.JNLE01000003_gene3885	142.0	9.24997e-42	N/A	N/A
structural_annotation	UHGV-1422483_15	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1422483_16	phrog_556	118.9	1.2e-35	minor head protein	head and packaging
UniRef90	UHGV-1422483_16	UniRef90_UPI00189BC4F9	358.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1422483_16	1449050.JNLE01000003_gene3886	150.0	1.82169e-44	N/A	N/A
Pfam	UHGV-1422483_16	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1422483_16	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1422483_17	phrog_3366	64.6	1.1e-18	N/A	unknown function
Pfam	UHGV-1422483_17	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1422483_17	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1422483_18	phrog_541	77.8	1.2e-22	head-tail adaptor	connector
eggNOG-mapper	UHGV-1422483_18	1449050.JNLE01000003_gene3888	82.0	1.64e-18	N/A	N/A
PHROG	UHGV-1422483_19	phrog_422	236.1	0	major head protein	head and packaging
eggNOG-mapper	UHGV-1422483_19	693746.OBV_18090	385.0	0	N/A	N/A
structural_annotation	UHGV-1422483_19	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1422483_20	phrog_194	97.9	1.2e-28	head scaffolding protein	head and packaging
UniRef90	UHGV-1422483_20	UniRef90_UPI0018995066	341.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1422483_20	742765.HMPREF9457_02126	166.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1422483_20	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1422483_20	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1422483_22	phrog_581	307.9	0	minor head protein	head and packaging
UniRef90	UHGV-1422483_22	UniRef90_UPI001897AC3D	988.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1422483_22	658655.HMPREF0988_02563	348.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1422483_22	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1422483_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1422483_22	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1422483_23	phrog_533	324.6	0	portal protein	head and packaging
UniRef90	UHGV-1422483_23	UniRef90_UPI00189C53D6	817.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-1422483_23	1304866.K413DRAFT_3035	476.0	0	N/A	N/A
structural_annotation	UHGV-1422483_23	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1422483_24	K06909	80.5	2.1e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1422483_24	phrog_2	88.0	1.7e-25	terminase large subunit	head and packaging
UniRef90	UHGV-1422483_24	UniRef90_UPI00189AB5B3	858.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1422483_24	1304866.K413DRAFT_3034	614.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1422483_24	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1422483_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1422483_24	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1422483_25	phrog_309	148.9	1.12104e-44	terminase small subunit	head and packaging
UniRef90	UHGV-1422483_25	UniRef90_UPI001A9BCC34	222.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1422483_25	693746.OBV_18020	142.0	1.05994e-41	transposase activity	N/A
Pfam	UHGV-1422483_25	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-1422483_25	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1422483_25	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-1422483_26	phrog_36	71.6	1.3e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1422483_26	UniRef90_A0A7C6D6F2	74.7	0.0000000000000312	Sigma70_r4 domain-containing protein	N/A
COG	UHGV-1422483_26	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1422483_26	PF07374,MF_00674,NF005248,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1422483_27	PF14282,COG5570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1422483_29	PF19824,MF_01506	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1422483	Yes	23,075	40	63	1