vOTU vOTU-148782

vOTU: vOTU-148782

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-148782
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00261 → vGENUS-00170 → vOTU-148782
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0116620
Biosample ID	SAMEA4378261
Genome length (bp)	30,538 bps
CheckV completeness	87.66% (Medium-quality)
CDS count	48
CDS density	93.49%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	253	Host agreement	98.42
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	25	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 87.66)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0116620_1	K01447	110.9	1.6e-32	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0116620_1	phrog_9611	115.7	4.7e-34	endolysin	lysis
UniRef90	UHGV-0116620_1	UniRef90_R5B1Z3	309.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0116620_1	97138.C820_00251	166.0	0	Ami_2	N/A
Pfam	UHGV-0116620_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0116620_1	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0116620_1	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0116620_2	658088.HMPREF0987_01102	51.2	0.000000513	Ami_2	N/A
COG	UHGV-0116620_2	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
PHROG	UHGV-0116620_3	phrog_6616	71.4	2e-21	tail protein	tail
structural_annotation	UHGV-0116620_3	PF13550,PF09931,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0116620_4	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0116620_5	phrog_1535	120.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0116620_5	UniRef90_A0A810PX76	108.0	7.92e-21	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0116620_5	1235797.C816_04182	188.0	0	SLT domain	N/A
COG	UHGV-0116620_5	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0116620_6	phrog_706	110.4	1.6e-32	N/A	unknown function
UniRef90	UHGV-0116620_6	UniRef90_UPI00164D7633	178.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0116620_6	693746.OBV_18170	171.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0116620_6	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0116620_6	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0116620_7	phrog_11299	101.2	1e-29	N/A	unknown function
eggNOG-mapper	UHGV-0116620_7	1449050.JNLE01000003_gene3883	67.8	0.00000000000267	N/A	N/A
structural_annotation	UHGV-0116620_7	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0116620_8	phrog_3099	87.5	1.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0116620_8	693746.OBV_18150	223.0	0	N/A	N/A
structural_annotation	UHGV-0116620_8	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0116620_9	phrog_3266	63.1	4.2e-18	tail completion	connector
eggNOG-mapper	UHGV-0116620_9	476272.RUMHYD_01781	121.0	9.58e-33	N/A	N/A
structural_annotation	UHGV-0116620_9	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0116620_10	phrog_556	63.3	9.3e-19	minor head protein	head and packaging
UniRef90	UHGV-0116620_10	UniRef90_A0A1H7MNM8	116.0	1.62e-30	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0116620_10	476272.RUMHYD_01780	114.0	1.7e-30	N/A	N/A
Pfam	UHGV-0116620_10	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0116620_10	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0116620_11	phrog_3366	50.6	0.000000000000037	N/A	unknown function
structural_annotation	UHGV-0116620_11	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0116620_12	phrog_541	71.9	8.6e-21	head-tail adaptor	connector
eggNOG-mapper	UHGV-0116620_12	33035.JPJF01000106_gene3131	75.9	0.0000000000000027	N/A	N/A
PHROG	UHGV-0116620_13	phrog_267	54.8	0.0000000000000015	major head protein	head and packaging
eggNOG-mapper	UHGV-0116620_13	1235799.C818_04223	158.0	8.40779e-44	N/A	N/A
structural_annotation	UHGV-0116620_13	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0116620_14	phrog_194	40.3	0.000000000058	head scaffolding protein	head and packaging
UniRef90	UHGV-0116620_14	UniRef90_UPI001C0EBA51	125.0	2.67e-32	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0116620_14	1125725.HMPREF1325_1331	61.6	0.00000000317	Phage minor structural protein GP20	N/A
Pfam	UHGV-0116620_14	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0116620_14	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0116620_16	phrog_581	242.3	0	minor head protein	head and packaging
UniRef90	UHGV-0116620_16	UniRef90_A0A3D4T830	344.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0116620_16	476272.RUMHYD_01761	226.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0116620_16	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0116620_16	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0116620_16	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0116620_17	phrog_533	212.4	0	portal protein	head and packaging
UniRef90	UHGV-0116620_17	UniRef90_A0A173TY48	345.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0116620_17	33035.JPJF01000106_gene3135	327.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0116620_17	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0116620_18	phrog_1233	95.2	7.8e-28	N/A	unknown function
eggNOG-mapper	UHGV-0116620_18	1415774.U728_832	93.2	3.72e-23	N/A	N/A
structural_annotation	UHGV-0116620_18	PF13058	N/A	N/A	N/A	N/A
KOfam	UHGV-0116620_19	K06909	395.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0116620_19	phrog_5653	146.1	1.79366e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0116620_19	UniRef90_A0A416S378	637.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0116620_19	33035.JPJF01000106_gene3136	596.0	0	Terminase small subunit	N/A
Pfam	UHGV-0116620_19	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0116620_19	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0116620_19	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0116620_19	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0116620_19	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0116620_19	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0116620_21	phrog_36	66.2	6.4e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0116620_21	UniRef90_A0A7D6VSS6	64.7	0.000000000198	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0116620_21	1294142.CINTURNW_1020	64.7	0.0000000000333	N/A	N/A
Pfam	UHGV-0116620_21	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0116620_21	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0116620_22	phrog_3136	117.2	3.7e-35	N/A	unknown function
UniRef90	UHGV-0116620_22	UniRef90_UPI001C26B029	126.0	7.08e-33	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0116620_22	97139.C824_00742	58.5	0.0000000238	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0116620_22	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0116620_22	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0116620_23	phrog_5781	68.6	9.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0116620_23	573061.Clocel_3558	77.8	3.1e-16	N/A	N/A
Pfam	UHGV-0116620_23	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0116620_23	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0116620_23	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
KOfam	UHGV-0116620_24	K06223	228.9	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0116620_24	phrog_56	178.0	0	DNA methyltransferase	other
UniRef90	UHGV-0116620_24	UniRef90_R9MCP5	310.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0116620_24	1235799.C818_02654	310.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0116620_24	MTase_II_00030	273.3	0	Type II methyltransferase	RM
Pfam	UHGV-0116620_24	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0116620_24	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0116620_24	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-0116620_25	K00558	220.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0116620_25	phrog_116	257.5	0	DNA methyltransferase	other
UniRef90	UHGV-0116620_25	UniRef90_A0A350THX9	734.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0116620_25	1121334.KB911073_gene1852	612.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0116620_25	MTase_II_00020	95.3	8.4e-31	Type II methyltransferase	RM
Pfam	UHGV-0116620_25	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0116620_25	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0116620_25	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0116620_26	1232449.BAHV02000016_gene1829	134.0	2.63e-38	N/A	N/A
KOfam	UHGV-0116620_27	K03700	93.0	4.1e-27	recU; recombination protein U	N/A
PHROG	UHGV-0116620_27	phrog_843	134.9	3e-40	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0116620_27	UniRef90_A0A1H0W5Y9	172.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0116620_27	537013.CLOSTMETH_01720	156.0	1.4013e-45	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0116620_27	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0116620_27	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0116620_27	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0116620_28	phrog_3584	133.0	2.3e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0116620_28	411470.RUMGNA_02047	137.0	5.73e-36	N/A	N/A
structural_annotation	UHGV-0116620_28	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0116620_31	K06284	119.4	2.1e-35	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	N/A
PHROG	UHGV-0116620_31	phrog_4681	100.8	5.3e-30	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0116620_31	UniRef90_A0A1C5KSN6	109.0	1.73e-29	Transition state regulatory protein AbrB	N/A
eggNOG-mapper	UHGV-0116620_31	268407.PWYN_12320	105.0	1.54e-28	AbrB family transcriptional regulator	N/A
Pfam	UHGV-0116620_31	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-0116620_31	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-0116620_31	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-0116620_31	PF15937,TIGR01439,NF004424,COG2002	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0116620_32	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0116620_33	phrog_5663	82.8	7.6e-27	N/A	unknown function
UniRef90	UHGV-0116620_33	UniRef90_UPI001EDDD6D5	61.6	0.0000000382	N/A	N/A
eggNOG-mapper	UHGV-0116620_33	390235.PputW619_1358	54.3	0.00000218	N/A	N/A
Pfam	UHGV-0116620_33	PF10386	N/A	N/A	N/A	DUF2441
structural_annotation	UHGV-0116620_33	PF10386	N/A	N/A	N/A	N/A
PHROG	UHGV-0116620_35	phrog_750	44.8	0.0000000000011	N/A	unknown function
structural_annotation	UHGV-0116620_35	PF13835,NF040858	N/A	N/A	N/A	N/A
KOfam	UHGV-0116620_41	K22300	67.0	4.2e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0116620_41	phrog_4	53.0	0.0000000000000096	transcriptional repressor	transcription regulation
UniRef90	UHGV-0116620_41	UniRef90_UPI00156FD326	145.0	1.77965e-42	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0116620_41	445972.ANACOL_03315	127.0	2.76e-36	N/A	N/A
Pfam	UHGV-0116620_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0116620_41	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0116620_41	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0116620_43	K07729	55.2	0.0000000000000017	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0116620_43	UniRef90_R5AVU4	91.7	3.94e-23	CI-like repressor	N/A
eggNOG-mapper	UHGV-0116620_43	1295642.H839_08059	52.0	0.000000033	Transcriptional	N/A
Pfam	UHGV-0116620_43	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0116620_43	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0116620_43	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0116620_44	K07448	129.6	2.5e-38	mrr; restriction system protein	N/A
PHROG	UHGV-0116620_44	phrog_19856	48.2	0.000000000000093	N/A	unknown function
UniRef90	UHGV-0116620_44	UniRef90_UPI00109C57D1	79.0	0.00000000000118	restriction endonuclease	N/A
eggNOG-mapper	UHGV-0116620_44	1235790.C805_00010	147.0	2.58e-40	Restriction endonuclease	N/A
PADLOC	UHGV-0116620_44	ZorD1_00005	72.9	3.1e-21	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0116620_44	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0116620_44	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
structural_annotation	UHGV-0116620_44	PF04471,MF_00722,NF040854,COG1787	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0116620_45	1262449.CP6013_2082	143.0	6.82993e-42	N/A	N/A
structural_annotation	UHGV-0116620_46	PF21227	N/A	N/A	N/A	N/A
PHROG	UHGV-0116620_47	phrog_5783	294.1	0	N/A	unknown function
UniRef90	UHGV-0116620_47	UniRef90_A0A7X5E2S9	334.0	0	NYN domain-containing protein	N/A
eggNOG-mapper	UHGV-0116620_47	665956.HMPREF1032_03590	317.0	0	NYN domain	N/A
Pfam	UHGV-0116620_47	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-0116620_47	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
structural_annotation	UHGV-0116620_47	PF01936,TIGR00288,COG1432	N/A	N/A	N/A	N/A
KOfam	UHGV-0116620_48	K14059	155.7	0	int; integrase	N/A
PHROG	UHGV-0116620_48	phrog_1	155.8	0	integrase	integration and excision
UniRef90	UHGV-0116620_48	UniRef90_A0A2Z4QB94	336.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0116620_48	626523.GCWU000342_00320	99.8	7.17e-21	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0116620_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0116620_48	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0116620_48	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0116620	Yes	30,538	56	88	1