vOTU vOTU-148836

vOTU: vOTU-148836

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-148836
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00381 → vGENUS-00754 → vOTU-148836
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0050610
Biosample ID	N/A
Genome length (bp)	22,093 bps
CheckV completeness	64.05% (Medium-quality)
CDS count	32
CDS density	89.99%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	133	Host agreement	87.22
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	227	Host agreement	98.68

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 64.05)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0050610_1	phrog_194	79.8	4.5e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-0050610_1	UniRef90_D4K444	167.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0050610_1	748224.HMPREF9436_03336	184.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0050610_1	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0050610_1	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0050610_2	phrog_3675	111.3	3.8e-33	N/A	unknown function
UniRef90	UHGV-0050610_2	UniRef90_A0A0E4H649	116.0	1.46e-31	YjcQ protein	N/A
eggNOG-mapper	UHGV-0050610_2	1120978.KB894082_gene1061	128.0	6.51e-37	YjcQ protein	N/A
Pfam	UHGV-0050610_2	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0050610_2	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0050610_3	PF06442,MF_01194,NF000331,COG5475	N/A	N/A	N/A	N/A
PHROG	UHGV-0050610_4	phrog_193	120.6	1.6e-35	head maturation protease	head and packaging
UniRef90	UHGV-0050610_4	UniRef90_A0A6N8H118	352.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0050610_4	748224.HMPREF9436_01469	315.0	0	N/A	N/A
Pfam	UHGV-0050610_4	PF21814	N/A	N/A	N/A	DUF6883
COG	UHGV-0050610_4	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
structural_annotation	UHGV-0050610_4	PF11429	N/A	N/A	N/A	N/A
PHROG	UHGV-0050610_5	phrog_104	225.5	0	portal protein	head and packaging
UniRef90	UHGV-0050610_5	UniRef90_A0A3E2U200	713.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0050610_5	748224.HMPREF9436_01468	700.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0050610_5	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0050610_5	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0050610_6	phrog_9	170.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0050610_6	UniRef90_UPI001F1A3C47	635.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0050610_6	748224.HMPREF9436_01467	771.0	0	phage terminase, large subunit	N/A
COG	UHGV-0050610_6	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0050610_6	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0050610_7	phrog_338	53.7	0.0000000000000044	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050610_7	UniRef90_UPI0015F33F36	204.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0050610_7	748224.HMPREF9436_01465	204.0	0	N/A	N/A
PHROG	UHGV-0050610_8	phrog_5763	55.3	3.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0050610_8	999413.HMPREF1094_00199	107.0	5.08e-24	N/A	N/A
PHROG	UHGV-0050610_9	phrog_1281	124.7	4.4e-37	N/A	unknown function
UniRef90	UHGV-0050610_9	UniRef90_UPI00130E304C	190.0	0	N/A	N/A
eggNOG-mapper	UHGV-0050610_9	1321815.HMPREF9193_02066	139.0	1.61e-39	N/A	N/A
Pfam	UHGV-0050610_9	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0050610_9	COG3600	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0050610_10	1297617.JPJD01000059_gene2640	138.0	3.15001e-40	N/A	N/A
structural_annotation	UHGV-0050610_10	PF06530,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0050610_12	K03497	93.8	3.2e-27	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0050610_12	phrog_4715	127.4	9.7e-38	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050610_12	UniRef90_A0A1Q6T350	820.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0050610_12	411471.SUBVAR_05842	370.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0050610_12	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0050610_12	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0050610_12	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0050610_13	K03496	228.8	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0050610_13	phrog_164	171.8	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050610_13	UniRef90_A0A6N8H6J9	404.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0050610_13	411471.SUBVAR_05839	318.0	0	AAA domain	N/A
Pfam	UHGV-0050610_13	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0050610_13	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0050610_13	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0050610_14	K02314	207.4	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0050610_14	phrog_19	192.8	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050610_14	UniRef90_D1PNB9	486.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0050610_14	411471.SUBVAR_05838	486.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0050610_14	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0050610_14	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0050610_14	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0050610_14	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0050610_15	phrog_270	146.8	1.79366e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050610_15	UniRef90_UPI000F632BBD	161.0	2.8026e-45	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0050610_15	469616.FMAG_01053	108.0	8.36e-25	Helix-turn-helix domain	N/A
Pfam	UHGV-0050610_15	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0050610_15	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0050610_15	PF02295,MF_01819,TIGR04176,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0050610_16	K03111	131.0	1.5e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0050610_16	phrog_44	139.2	2.59997e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050610_16	UniRef90_A0A1Q6T3F1	257.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0050610_16	411471.SUBVAR_04646	179.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0050610_16	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0050610_16	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0050610_16	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0050610_16	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0050610_16	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0050610_17	phrog_1029	192.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0050610_17	411471.SUBVAR_05833	225.0	0	N/A	N/A
structural_annotation	UHGV-0050610_17	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-0050610_18	phrog_997	110.3	1.4e-32	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050610_18	UniRef90_A0A429ZWU1	74.3	0.0000000000000123	Replication terminator protein	N/A
eggNOG-mapper	UHGV-0050610_18	411471.SUBVAR_05832	160.0	0	N/A	N/A
PHROG	UHGV-0050610_20	phrog_7566	75.1	6.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0050610_20	411471.SUBVAR_05830	114.0	1.19e-31	N/A	N/A
COG	UHGV-0050610_21	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-0050610_21	PF04606,NF007241	N/A	N/A	N/A	N/A
PHROG	UHGV-0050610_22	phrog_72	53.2	0.000000000000005	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0050610_22	411471.SUBVAR_05829	223.0	0	N/A	N/A
Pfam	UHGV-0050610_22	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-0050610_22	PF05772,NF007281	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0050610_23	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0050610_24	phrog_10280	51.5	0.00000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0050610_24	742738.HMPREF9460_02068	62.8	0.00000000941	N/A	N/A
KOfam	UHGV-0050610_27	K22300	42.2	0.000000000016	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0050610_27	phrog_8	51.4	0.000000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-0050610_27	UniRef90_A0A367GFH2	103.0	9.83e-28	Transcriptional regulator	N/A
Pfam	UHGV-0050610_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0050610_27	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0050610_27	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0050610_28	K01356	147.0	2.10195e-43	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0050610_28	phrog_4	119.8	3e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-0050610_28	UniRef90_A0A1Q6T3E1	400.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0050610_28	411483.FAEPRAA2165_03041	155.0	2.8026e-45	N/A	N/A
Pfam	UHGV-0050610_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0050610_28	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0050610_28	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0050610_28	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0050610_29	K07451	56.7	4e-16	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0050610_29	phrog_589	60.1	4.1e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050610_29	UniRef90_A0A415UM57	420.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0050610_29	386415.NT01CX_1757	335.0	0	HNH endonuclease	N/A
Pfam	UHGV-0050610_29	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0050610_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0050610_29	PF01844,NF040563,COG1403	N/A	N/A	N/A	N/A
KOfam	UHGV-0050610_30	K18843	69.8	5.5e-20	hicB; antitoxin HicB	N/A
PHROG	UHGV-0050610_30	phrog_497	74.5	2e-21	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0050610_30	UniRef90_A0A1Q6T3W5	253.0	0	HicB family protein	N/A
eggNOG-mapper	UHGV-0050610_30	718252.FP2_04880	189.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-0050610_30	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0050610_30	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0050610_30	PF15919,COG1598	N/A	N/A	N/A	N/A
KOfam	UHGV-0050610_31	K07339	62.7	5.5e-18	hicA; mRNA interferase HicA [EC:3.1.-.-]	N/A
PHROG	UHGV-0050610_31	phrog_353	86.1	2.2e-25	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0050610_31	UniRef90_A0A1Q6T334	132.0	3.55e-39	Toxin HicA	N/A
eggNOG-mapper	UHGV-0050610_31	478749.BRYFOR_07601	88.2	1.46e-22	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0050610_31	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-0050610_31	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-0050610_31	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-0050610_32	K14059	133.2	3.3e-39	int; integrase	N/A
PHROG	UHGV-0050610_32	phrog_1	150.4	1.54143e-44	integrase	integration and excision
UniRef90	UHGV-0050610_32	UniRef90_A0A1Q6T3G6	736.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0050610_32	1203606.HMPREF1526_00215	137.0	4.06e-34	Phage integrase family	N/A
Pfam	UHGV-0050610_32	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0050610_32	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0050610_32	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0050610	Yes	22,093	58	64	1