vOTU vOTU-148940

vOTU: vOTU-148940

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-148940
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01291 → vGENUS-03412 → vOTU-148940
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0153277
Biosample ID	N/A
Genome length (bp)	31,587 bps
CheckV completeness	76.94% (Medium-quality)
CDS count	46
CDS density	95.33%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1658	Host agreement	80.52
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 76.94)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0153277_4	UniRef90_A0A412ULX9	109.0	3.05e-30	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0153277_4	679200.HMPREF9333_02253	57.8	0.000000000132	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0153277_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0153277_4	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0153277_4	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-0153277_5	K01447	57.8	2.6e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0153277_5	phrog_20388	309.6	0	endolysin	lysis
UniRef90	UHGV-0153277_5	UniRef90_A0A374N1L8	555.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0153277_5	1203606.HMPREF1526_00253	316.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0153277_5	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0153277_5	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0153277_5	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0153277_5	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0153277_6	phrog_443	65.9	1.1e-18	holin	lysis
UniRef90	UHGV-0153277_6	UniRef90_R6R2Q3	89.4	4.49e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0153277_6	1235797.C816_04172	82.4	4.29e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0153277_6	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0153277_6	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0153277_7	phrog_1863	71.5	1.1e-21	N/A	unknown function
UniRef90	UHGV-0153277_7	UniRef90_UPI001F223E8B	90.9	2.7e-22	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0153277_7	1203606.HMPREF1526_02027	81.6	1.99e-19	N/A	N/A
structural_annotation	UHGV-0153277_9	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
PHROG	UHGV-0153277_10	phrog_1067	99.0	1.4e-29	minor head protein	head and packaging
UniRef90	UHGV-0153277_10	UniRef90_A0A1G5CPD2	155.0	1.01e-39	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0153277_10	1462527.CCDM010000003_gene3730	62.4	0.000000152	gp58-like protein	N/A
Pfam	UHGV-0153277_10	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0153277_10	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0153277_10	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0153277_10	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0153277_11	phrog_33	82.2	1.2e-23	distal tail protein Dit	tail
UniRef90	UHGV-0153277_11	UniRef90_A0A1G5CPA2	133.0	3.34e-34	Phage-related protein	N/A
eggNOG-mapper	UHGV-0153277_11	1160721.RBI_I01575	94.0	3.5e-20	Phage tail protein	N/A
COG	UHGV-0153277_11	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0153277_11	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0153277_12	K20283	81.6	1.6e-24	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0153277_12	phrog_1272	235.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0153277_12	UniRef90_A0A412ULX0	1707.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0153277_12	588581.Cpap_1264	235.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0153277_12	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0153277_12	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0153277_12	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0153277_13	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0153277_14	phrog_88	74.9	1.2e-21	major tail protein	tail
UniRef90	UHGV-0153277_14	UniRef90_A0A1G5CNS8	152.0	7.2307e-43	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0153277_14	1321782.HMPREF1986_01362	65.1	0.000000000279	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0153277_14	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0153277_14	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0153277_15	UniRef90_UPI000E5564A4	265.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0153277_15	1235792.C808_00089	50.4	0.00000606	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0153277_15	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0153277_15	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0153277_16	879305.HMPREF9290_0134	52.4	0.000000373	N/A	N/A
structural_annotation	UHGV-0153277_16	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0153277_17	phrog_19734	74.8	1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0153277_17	86416.Clopa_0343	63.2	0.0000000000284	N/A	N/A
NCBIFam	UHGV-0153277_17	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0153277_17	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0153277_18	phrog_749	56.7	4e-16	N/A	unknown function
UniRef90	UHGV-0153277_18	UniRef90_A0A1G5CMX8	108.0	1.06e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0153277_18	1211817.CCAT010000053_gene2133	62.0	0.0000000000366	N/A	N/A
PHROG	UHGV-0153277_19	phrog_10	123.4	2.6e-36	major head protein	head and packaging
UniRef90	UHGV-0153277_19	UniRef90_A0A412ULW9	718.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0153277_19	1211817.CCAT010000053_gene2132	320.0	0	Phage capsid family	N/A
Pfam	UHGV-0153277_19	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0153277_19	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0153277_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0153277_19	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0153277_20	K01358	142.6	3.99931e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0153277_20	phrog_94	213.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0153277_20	UniRef90_A0A412ULU1	410.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0153277_20	86416.Clopa_0340	171.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0153277_20	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0153277_20	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0153277_20	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0153277_21	phrog_12	100.3	1.6e-29	portal protein	head and packaging
UniRef90	UHGV-0153277_21	UniRef90_A0A412ULV9	721.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0153277_21	1415774.U728_1254	263.0	0	Phage portal protein	N/A
Pfam	UHGV-0153277_21	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0153277_21	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0153277_21	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0153277_21	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0153277_22	phrog_9	289.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0153277_22	UniRef90_A0A412UM03	1038.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0153277_22	86416.Clopa_0337	607.0	0	Phage Terminase	N/A
Pfam	UHGV-0153277_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0153277_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0153277_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0153277_22	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0153277_23	phrog_5110	83.0	2.5e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0153277_23	UniRef90_A0A1M5U1D5	113.0	1.2e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0153277_23	1211817.CCAT010000053_gene2128	100.0	3.14e-26	N/A	N/A
Pfam	UHGV-0153277_23	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0153277_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0153277_24	phrog_119	73.3	3.4e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0153277_24	UniRef90_A0A412ULY9	222.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0153277_24	1158607.UAU_01026	101.0	3.99e-26	HNH endonuclease	N/A
Pfam	UHGV-0153277_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0153277_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0153277_25	PF02796,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-0153277_28	K18830	53.2	0.0000000000000082	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0153277_28	phrog_8	64.0	3.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0153277_28	UniRef90_A0A374N9T4	117.0	2.25e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0153277_28	717605.Theco_0106	73.9	5.84e-16	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-0153277_28	retron_type_VI_hth_cluster2_1	40.4	0.000000000091	N/A	Retron
Pfam	UHGV-0153277_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0153277_28	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0153277_28	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0153277_29	UniRef90_UPI000E4DC4DA	140.0	9.15999e-40	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0153277_29	PF15597	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0153277_33	PF02559,MF_00667,TIGR02861	N/A	N/A	N/A	N/A
PHROG	UHGV-0153277_34	phrog_140	95.2	8.2e-28	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0153277_34	UniRef90_A0A2N0UXU6	267.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0153277_34	411462.DORLON_00806	207.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0153277_34	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0153277_34	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0153277_34	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0153277_35	phrog_16687	66.8	2.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0153277_35	1214217.ALNF01000014_gene1395	48.1	0.0000021	N/A	N/A
KOfam	UHGV-0153277_36	K07505	404.2	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0153277_36	phrog_2597	1172.7	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0153277_36	UniRef90_A0A2N0UXP7	1482.0	0	Regulatory protein RepA	N/A
eggNOG-mapper	UHGV-0153277_36	394503.Ccel_3304	954.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0153277_36	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0153277_36	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0153277_36	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0153277_36	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0153277_37	K17677	361.5	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0153277_37	phrog_16	296.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0153277_37	UniRef90_A0A412ULZ3	1045.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0153277_37	1235798.C817_03499	835.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0153277_37	mREase_IV_00005	130.8	1.3e-38	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0153277_37	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0153277_37	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0153277_37	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0153277_37	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0153277_38	phrog_2698	175.1	0	N/A	unknown function
UniRef90	UHGV-0153277_38	UniRef90_UPI000F54335B	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-0153277_38	742723.HMPREF9477_00927	139.0	7.44e-40	N/A	N/A
structural_annotation	UHGV-0153277_38	PF17426,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-0153277_39	phrog_124	265.5	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0153277_39	UniRef90_A0A2N0UXR5	673.0	0	Phage nucleotide-binding protein	N/A
eggNOG-mapper	UHGV-0153277_39	1123304.AQYA01000037_gene196	432.0	0	AAA domain	N/A
Pfam	UHGV-0153277_39	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0153277_39	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0153277_41	K03546	58.0	1e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0153277_41	phrog_1499	481.7	0	N/A	unknown function
UniRef90	UHGV-0153277_41	UniRef90_A0A2N0UXU2	752.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0153277_41	645991.Sgly_0320	504.0	0	domain protein	N/A
Pfam	UHGV-0153277_41	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0153277_41	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0153277_41	TIGR03185,COG5293	N/A	N/A	N/A	N/A
PHROG	UHGV-0153277_42	phrog_323	82.3	4.5e-27	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0153277_42	UniRef90_UPI001C01CFF8	288.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-0153277_42	394503.Ccel_3305	338.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
Pfam	UHGV-0153277_42	PF00249	N/A	N/A	Myb-like DNA-binding domain	Myb_DNA-binding
dbAPIS	UHGV-0153277_42	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-0153277_42	PF11112,NF040595	N/A	N/A	N/A	N/A
PHROG	UHGV-0153277_44	phrog_6058	42.4	0.0000000000088	N/A	unknown function
structural_annotation	UHGV-0153277_44	NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-0153277_46	K22300	51.7	0.000000000000021	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0153277_46	phrog_2328	41.7	0.000000000016	transcriptional repressor	transcription regulation
UniRef90	UHGV-0153277_46	UniRef90_A0A373KVP1	107.0	1.17e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0153277_46	525254.HMPREF0072_0267	79.3	1.97e-17	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0153277_46	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0153277_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0153277_46	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0153277	Yes	31,587	41	77	1