vOTU vOTU-149992

vOTU: vOTU-149992

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-149992
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00007 → vGENUS-01132 → vOTU-149992
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1417998
Biosample ID	N/A
Genome length (bp)	35,066 bps
CheckV completeness	60.84% (Medium-quality)
CDS count	52
CDS density	90.18%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	436	Host agreement	96.56
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 60.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1417998_1	phrog_64	146.7	1.09301e-43	portal protein	head and packaging
UniRef90	UHGV-1417998_1	UniRef90_A0A371ILT4	332.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1417998_1	1121866.AUGK01000003_gene1429	275.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1417998_1	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1417998_1	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-1417998_2	UniRef90_UPI0018A09237	65.9	0.0000000000153	N/A	N/A
eggNOG-mapper	UHGV-1417998_2	397290.C810_05229	61.6	0.000000000128	N/A	N/A
structural_annotation	UHGV-1417998_2	PF14359,NF040588,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-1417998_5	phrog_29	181.8	0	major head protein	head and packaging
UniRef90	UHGV-1417998_5	UniRef90_A0A2Z4QBB4	366.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-1417998_5	1347368.HG964404_gene4993	257.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1417998_5	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1417998_5	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1417998_6	UniRef90_R6N215	84.3	6.51e-19	Phage QLRG family putative DNA packaging	N/A
structural_annotation	UHGV-1417998_6	PF05135	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1417998_7	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1417998_9	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1417998_10	phrog_158	47.3	0.00000000000034	major tail protein	tail
UniRef90	UHGV-1417998_10	UniRef90_UPI001D087591	115.0	2.49e-30	phage tail protein	N/A
eggNOG-mapper	UHGV-1417998_10	1449343.JQLQ01000002_gene1514	53.1	0.00000108	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-1417998_10	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1417998_11	UniRef90_A0A847YX95	70.9	0.000000000000144	N/A	N/A
eggNOG-mapper	UHGV-1417998_11	1123263.AUKY01000015_gene1618	61.6	0.0000000000972	N/A	N/A
Pfam	UHGV-1417998_11	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1417998_11	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1417998_12	1121333.JMLH01000047_gene1011	77.4	2.76e-16	N/A	N/A
PHROG	UHGV-1417998_13	phrog_28775	171.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1417998_13	UniRef90_A0A318EME6	150.0	6.47e-33	Phage-related protein	N/A
eggNOG-mapper	UHGV-1417998_13	1121866.AUGK01000003_gene1437	195.0	0	phage tail tape measure protein	N/A
COG	UHGV-1417998_13	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-1417998_14	phrog_1194	88.1	6.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-1417998_14	665956.HMPREF1032_03056	52.0	0.00000127	N/A	N/A
Pfam	UHGV-1417998_14	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1417998_14	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1417998_15	phrog_13879	209.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1417998_15	1122919.KB905559_gene1344	143.0	3.11e-33	N/A	N/A
Pfam	UHGV-1417998_15	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1417998_15	PF14594,PF19789,PF03256,PF09134,NF033848,COG3500,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1417998_16	phrog_18725	72.4	5.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-1417998_16	1226322.HMPREF1545_00062	80.5	6.1e-17	N/A	N/A
PHROG	UHGV-1417998_17	phrog_2712	45.1	0.000000000000065	tail fiber protein	tail
structural_annotation	UHGV-1417998_17	NF012201	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1417998_19	NF040910	N/A	N/A	N/A	N/A
KOfam	UHGV-1417998_20	K07273	176.8	0	acm; lysozyme	N/A
PHROG	UHGV-1417998_20	phrog_291	151.9	4.2039e-45	endolysin	lysis
UniRef90	UHGV-1417998_20	UniRef90_UPI001D0EE7D8	330.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-1417998_20	748224.HMPREF9436_00154	323.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1417998_20	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1417998_20	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1417998_20	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1417998_21	phrog_4105	85.9	3.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1417998_21	657322.FPR_27220	123.0	3.41e-35	N/A	N/A
PHROG	UHGV-1417998_22	phrog_15303	87.3	1.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1417998_23	411483.FAEPRAA2165_00757	174.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-1417998_25	PF07870,MF_01506	N/A	N/A	N/A	N/A
PHROG	UHGV-1417998_29	phrog_16490	100.5	2.4e-39	N/A	unknown function
eggNOG-mapper	UHGV-1417998_29	1408437.JNJN01000043_gene803	158.0	1.68156e-44	N/A	N/A
eggNOG-mapper	UHGV-1417998_30	1408437.JNJN01000043_gene802	118.0	1.05e-32	N/A	N/A
eggNOG-mapper	UHGV-1417998_31	1408437.JNJN01000043_gene801	88.2	7.43e-19	N/A	N/A
PHROG	UHGV-1417998_32	phrog_130	136.4	1.90001e-40	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1417998_32	UniRef90_UPI001DACB905	153.0	7.0107e-42	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1417998_32	1121115.AXVN01000056_gene2483	156.0	9.24857e-44	BRO family, N-terminal domain	N/A
Pfam	UHGV-1417998_32	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1417998_32	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1417998_32	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1417998_33	phrog_3896	69.6	2.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-1417998_33	397290.C810_01338	67.8	0.0000000000000349	N/A	N/A
structural_annotation	UHGV-1417998_34	PF07878	N/A	N/A	N/A	N/A
Pfam	UHGV-1417998_35	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-1417998_36	K03496	239.2	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1417998_36	phrog_164	162.7	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1417998_36	UniRef90_A0A1C6BS15	212.0	0	Sporulation initiation inhibitor protein soj	N/A
eggNOG-mapper	UHGV-1417998_36	1408423.JHYA01000021_gene392	195.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-1417998_36	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1417998_36	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1417998_36	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-1417998_39	phrog_4402	107.7	8.3e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1417998_39	UniRef90_A0A0H5Q331	253.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1417998_39	999413.HMPREF1094_04438	142.0	1.52e-36	Initiator Replication protein	N/A
Pfam	UHGV-1417998_39	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-1417998_39	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-1417998_39	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-1417998_39	PF01051,PF21205,NF010305,COG5527	N/A	N/A	N/A	N/A
UniRef90	UHGV-1417998_40	UniRef90_A0A2A7AM70	189.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1417998_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1417998_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1417998_40	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1417998_44	phrog_8	42.2	0.000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-1417998_44	UniRef90_A0A358M3D8	73.9	0.0000000000000176	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1417998_44	693746.OBV_43290	64.3	0.0000000000164	addiction module antidote protein HigA	N/A
COG	UHGV-1417998_44	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1417998_44	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1417998_45	phrog_1468	40.4	0.00000000003	transcriptional repressor	transcription regulation
UniRef90	UHGV-1417998_45	UniRef90_UPI001956DCC9	70.1	0.0000000000000146	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-1417998_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1417998_45	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1417998_46	K07741	99.4	7.8e-29	antB; anti-repressor protein	N/A
PHROG	UHGV-1417998_46	phrog_63	200.1	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1417998_46	UniRef90_A0A844D5R9	318.0	0	Phage regulatory protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-1417998_46	1449343.JQLQ01000002_gene1368	247.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-1417998_46	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-1417998_46	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-1417998_46	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-1417998_46	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-1417998_46	PF03374,PF09669,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1417998_47	PF10922	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1417998_48	TIGR03826	N/A	N/A	N/A	N/A
Pfam	UHGV-1417998_50	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1417998_50	PF13443,TIGR02684,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1417998_51	PF14143	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1417998_52	272623.L157023	48.9	0.00000213	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	N/A
COG	UHGV-1417998_52	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1417998	Yes	35,066	50	61	1