vOTU vOTU-150377

vOTU: vOTU-150377

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-150377
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Limivivens → Limivivens sp905214955
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-06376 → vOTU-150377
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Limivivens → Limivivens sp905214955
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0004006
Biosample ID	N/A
Genome length (bp)	37,126 bps
CheckV completeness	84.85% (Medium-quality)
CDS count	41
CDS density	94.24%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Limivivens → Limivivens sp905214955	Total connections	1	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Limivivens → Limivivens sp905214955	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 84.85)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0004006_1	phrog_22695	82.7	6.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0004006_1	1235799.C818_04196	70.1	0.000000000000359	N/A	N/A
KOfam	UHGV-0004006_2	K07465	44.7	0.0000000000019	K07465; putative RecB family exonuclease	N/A
PHROG	UHGV-0004006_2	phrog_69	318.5	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004006_2	UniRef90_A0A7G5MSP0	530.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004006_2	1235799.C818_04197	503.0	0	N/A	N/A
Pfam	UHGV-0004006_2	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0004006_2	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0004006_2	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_3	phrog_112	193.4	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004006_3	UniRef90_A0A3R6MD20	339.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004006_3	1235799.C818_04198	314.0	0	N/A	N/A
Pfam	UHGV-0004006_3	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0004006_3	PF10991,MF_04153	N/A	N/A	N/A	N/A
KOfam	UHGV-0004006_4	K02334	840.8	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0004006_4	phrog_17	373.9	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004006_4	UniRef90_UPI001896A801	1048.0	0	DNA polymerase	N/A
eggNOG-mapper	UHGV-0004006_4	1235799.C818_04199	969.0	0	DNA polymerase A domain	N/A
Pfam	UHGV-0004006_4	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0004006_4	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0004006_4	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_5	phrog_256	1055.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004006_5	UniRef90_A0A396QJJ4	1288.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-0004006_5	1235799.C818_04200	1149.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-0004006_5	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0004006_5	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0004006_5	PF05272,NF011296,NF040562,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_6	phrog_93	60.6	2.3e-17	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004006_6	UniRef90_A0A1C5VQU2	161.0	0	VRR-NUC domain	N/A
eggNOG-mapper	UHGV-0004006_6	1235799.C818_04201	132.0	6.28e-39	VRR_NUC	N/A
Pfam	UHGV-0004006_6	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
KOfam	UHGV-0004006_7	K14440	120.3	6.6e-36	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0004006_7	phrog_62	416.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004006_7	UniRef90_A0A1C5VQG1	845.0	0	ATP-dependent helicase HepA	N/A
eggNOG-mapper	UHGV-0004006_7	1235799.C818_04202	779.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-0004006_7	DpdE_00010	99.6	3.6e-29	DpdE	DPD
Pfam	UHGV-0004006_7	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0004006_7	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0004006_7	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0004006_7	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_13	phrog_36	64.0	2.9e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0004006_13	UniRef90_UPI001D089637	145.0	3.67981e-42	N/A	N/A
eggNOG-mapper	UHGV-0004006_13	1304866.K413DRAFT_3028	151.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-0004006_13	PF04545	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004006_14	UniRef90_A0A416D9R8	529.0	0	Haloacid dehalogenase-like hydrolase	N/A
eggNOG-mapper	UHGV-0004006_14	754027.HMPREF9554_02409	452.0	0	Phosphoserine phosphatase	N/A
COG	UHGV-0004006_14	COG0560	N/A	N/A	Phosphoserine phosphatase	N/A
structural_annotation	UHGV-0004006_14	PF06888,MF_01680,TIGR00338,COG0560	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_15	phrog_606	101.5	6.8e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0004006_15	UniRef90_UPI0004BAB6EB	162.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0004006_15	397290.C810_05185	189.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-0004006_15	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0004006_15	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0004006_16	K06909	139.4	3.50002e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0004006_16	phrog_10250	227.0	0	N/A	unknown function
UniRef90	UHGV-0004006_16	UniRef90_A0A2V2D9F3	786.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0004006_16	903814.ELI_3215	648.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0004006_16	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0004006_16	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0004006_16	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0004006_16	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_17	phrog_64	402.1	0	portal protein	head and packaging
UniRef90	UHGV-0004006_17	UniRef90_A0A2V2D7F4	698.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0004006_17	742733.HMPREF9469_01826	642.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0004006_17	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0004006_17	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0004006_17	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_18	phrog_115	376.2	0	minor head protein	head and packaging
UniRef90	UHGV-0004006_18	UniRef90_A0A1C5ZQ59	624.0	0	NAD(+)--arginine ADP-ribosyltransferase EFV	N/A
eggNOG-mapper	UHGV-0004006_18	742733.HMPREF9469_01825	399.0	0	Phage head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-0004006_18	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0004006_18	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0004006_18	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004006_18	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004006_19	411460.RUMTOR_01296	73.2	9.35e-17	N/A	N/A
PHROG	UHGV-0004006_20	phrog_1048	177.5	0	N/A	unknown function
UniRef90	UHGV-0004006_20	UniRef90_A0A373P4J3	335.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004006_20	457412.RSAG_01107	276.0	0	N/A	N/A
Pfam	UHGV-0004006_20	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0004006_20	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0004006_20	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_21	phrog_478	118.3	3.5e-35	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0004006_21	UniRef90_R6R5K5	146.0	6.37591e-43	Protein 64 protein	N/A
eggNOG-mapper	UHGV-0004006_21	1111121.HMPREF1247_0834	142.0	5.69067e-42	N/A	N/A
PHROG	UHGV-0004006_22	phrog_172	154.9	0	head scaffolding protein	head and packaging
UniRef90	UHGV-0004006_22	UniRef90_UPI00156EF0C7	291.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004006_22	742733.HMPREF9469_01824	199.0	0	N/A	N/A
Pfam	UHGV-0004006_22	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0004006_22	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_23	phrog_247	288.0	0	major head protein	head and packaging
UniRef90	UHGV-0004006_23	UniRef90_UPI00156DFF0E	654.0	0	coat protein	N/A
eggNOG-mapper	UHGV-0004006_23	1304866.K413DRAFT_3038	538.0	0	N/A	N/A
structural_annotation	UHGV-0004006_23	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_24	phrog_132	72.6	4.2e-21	head-tail adaptor	connector
UniRef90	UHGV-0004006_24	UniRef90_UPI00156F0BDA	159.0	0	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0004006_24	742733.HMPREF9469_01821	149.0	2.8026e-45	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0004006_24	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0004006_24	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_25	phrog_2168	74.1	1.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-0004006_25	742733.HMPREF9469_01820	164.0	0	N/A	N/A
structural_annotation	UHGV-0004006_25	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_26	phrog_5	77.4	2.4e-22	tail completion or Neck1 protein	connector
UniRef90	UHGV-0004006_26	UniRef90_UPI001D01C150	233.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0004006_26	742733.HMPREF9469_01819	172.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0004006_26	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0004006_26	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0004006_26	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_27	phrog_78	53.0	0.0000000000000064	tail terminator	connector
eggNOG-mapper	UHGV-0004006_27	1280692.AUJL01000025_gene2075	153.0	0	N/A	N/A
structural_annotation	UHGV-0004006_27	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_28	phrog_158	70.2	3.9e-20	major tail protein	tail
UniRef90	UHGV-0004006_28	UniRef90_UPI001D061EE2	182.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0004006_28	742733.HMPREF9469_01817	169.0	0	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0004006_28	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0004006_28	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_29	phrog_183	56.5	3.9e-16	tail chaperone protein	tail
UniRef90	UHGV-0004006_29	UniRef90_UPI00156E7CD5	175.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004006_29	1211844.CBLM010000016_gene1484	107.0	1.27e-27	N/A	N/A
Pfam	UHGV-0004006_29	PF19591	N/A	N/A	N/A	DUF6096
structural_annotation	UHGV-0004006_29	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_30	phrog_2066	46.9	0.00000000000046	N/A	unknown function
PHROG	UHGV-0004006_31	phrog_1535	195.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0004006_31	1232453.BAIF02000058_gene1637	204.0	0	phage tail tape measure protein	N/A
COG	UHGV-0004006_31	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0004006_32	phrog_1194	94.1	1.1e-27	N/A	unknown function
UniRef90	UHGV-0004006_32	UniRef90_R5Z572	68.2	0.000000000000779	Putative phage protein	N/A
eggNOG-mapper	UHGV-0004006_32	1232453.BAIF02000058_gene1638	110.0	7.08e-30	N/A	N/A
structural_annotation	UHGV-0004006_32	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004006_33	UniRef90_UPI001EEC492B	72.0	0.00000000000016	N/A	N/A
eggNOG-mapper	UHGV-0004006_33	272562.CA_C1175	73.6	0.00000000000000659	N/A	N/A
structural_annotation	UHGV-0004006_33	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_34	phrog_6616	110.2	1.5e-32	tail protein	tail
UniRef90	UHGV-0004006_34	UniRef90_UPI001D0763AB	331.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0004006_34	1232453.BAIF02000058_gene1641	219.0	0	Phage minor structural protein	N/A
COG	UHGV-0004006_34	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0004006_34	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_35	phrog_6468	78.3	0	tail fiber protein; host specificity	tail
UniRef90	UHGV-0004006_35	UniRef90_A0A374AP87	600.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0004006_35	1392487.JIAD01000001_gene509	228.0	0	N/A	N/A
structural_annotation	UHGV-0004006_35	PF14874,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_36	phrog_1330	67.4	2.9e-20	tail protein	tail
eggNOG-mapper	UHGV-0004006_36	397291.C804_01133	106.0	2.2e-20	N/A	N/A
Pfam	UHGV-0004006_36	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
PHROG	UHGV-0004006_37	phrog_2566	67.6	1.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0004006_37	1232453.BAIF02000058_gene1639	55.1	0.00000000541	N/A	N/A
PHROG	UHGV-0004006_38	phrog_9428	144.0	1.30321e-43	N/A	unknown function
UniRef90	UHGV-0004006_38	UniRef90_A0A414DFF5	194.0	0	Serine/threonine protein kinase	N/A
eggNOG-mapper	UHGV-0004006_38	411470.RUMGNA_00253	192.0	0	N/A	N/A
PHROG	UHGV-0004006_39	phrog_1129	86.0	2.2e-25	holin	lysis
UniRef90	UHGV-0004006_39	UniRef90_A0A413I492	167.0	0	Holin	N/A
eggNOG-mapper	UHGV-0004006_39	33035.JPJF01000043_gene995	133.0	1.8e-39	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0004006_39	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0004006_39	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0004006_40	phrog_774	59.2	9.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0004006_40	397290.C810_05225	71.6	0.000000000000004	N/A	N/A
KOfam	UHGV-0004006_41	K01447	60.1	4.5e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0004006_41	phrog_1794	95.3	8.2e-28	amidase	lysis
UniRef90	UHGV-0004006_41	UniRef90_UPI001BC0DCCF	467.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0004006_41	411468.CLOSCI_00531	181.0	0	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0004006_41	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0004006_41	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-0004006_41	PF01510,PF19087,MF_04111,NF008758,COG3023	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0004006	Yes	37,126	48	85	1