vOTU vOTU-150740

vOTU: vOTU-150740

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-150740
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00089 → vGENUS-00825 → vOTU-150740
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1972001
Biosample ID	N/A
Genome length (bp)	23,400 bps
CheckV completeness	65.91% (Medium-quality)
CDS count	29
CDS density	93.37%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	631	Host agreement	97.31
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	921	Host agreement	99.24

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 65.91)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1972001_1	UniRef90_A0A373XY93	152.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1972001_1	411462.DORLON_00819	50.1	0.00000139	Cro/C1-type HTH DNA-binding domain	N/A
COG	UHGV-1972001_1	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-1972001_2	phrog_20936	41.7	0.00000000002	N/A	unknown function
UniRef90	UHGV-1972001_2	UniRef90_A0A374E958	142.0	4.48416e-43	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1972001_2	861450.HMPREF0080_02020	50.1	0.000000413	N/A	N/A
Pfam	UHGV-1972001_2	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-1972001_2	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-1972001_3	K03763	201.8	0	polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]	N/A
PHROG	UHGV-1972001_3	phrog_192	182.0	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1972001_3	UniRef90_A0A373VNA0	853.0	0	Exonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-1972001_3	864565.HMPREF0379_1203	165.0	3.72003e-41	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity	N/A
PADLOC	UHGV-1972001_3	cd06127	144.8	3.50325e-43	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-1972001_3	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-1972001_3	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-1972001_3	COG2176	N/A	N/A	DNA polymerase III, alpha subunit (gram-positive type)	N/A
KOfam	UHGV-1972001_4	K14059	135.9	5.19999e-40	int; integrase	N/A
PHROG	UHGV-1972001_4	phrog_1	160.2	0	integrase	integration and excision
UniRef90	UHGV-1972001_4	UniRef90_A0A374HXT9	793.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1972001_4	445972.ANACOL_01797	248.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1972001_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1972001_4	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1972001_4	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1972001_5	phrog_1914	69.7	4.2e-20	N/A	unknown function
UniRef90	UHGV-1972001_5	UniRef90_UPI001A9A7A19	342.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1972001_5	997296.PB1_16109	137.0	9.15e-39	N/A	N/A
Pfam	UHGV-1972001_5	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1972001_5	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1972001_5	PF06114,MF_00745,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1972001_6	K22299	56.3	7.5e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-1972001_6	UniRef90_A0A374ERP2	225.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1972001_6	59374.Fisuc_2499	95.5	7.52e-24	sequence-specific DNA binding	N/A
PADLOC	UHGV-1972001_6	retron_type_VI_hth_cluster2_1	42.0	0.000000000018	N/A	Retron
Pfam	UHGV-1972001_6	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1972001_6	COG1426	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1972001_6	PF13560,MF_00535,NF041951,COG1513	N/A	N/A	N/A	N/A
PHROG	UHGV-1972001_7	phrog_297	170.1	0	holin	lysis
UniRef90	UHGV-1972001_7	UniRef90_A0A356CY82	466.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-1972001_7	1160721.RBI_II00521	96.3	5.15e-21	hydrolase, family 25	N/A
Pfam	UHGV-1972001_7	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1972001_7	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1972001_7	PF06940,TIGR02594,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1972001_8	phrog_199	81.2	1.1e-23	holin	lysis
UniRef90	UHGV-1972001_8	UniRef90_A0A373XMP0	283.0	0	Holin	N/A
eggNOG-mapper	UHGV-1972001_8	1160721.RBI_I01565	183.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1972001_8	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1972001_8	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1972001_8	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1972001_8	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1972001_9	phrog_134	45.5	0.00000000000096	N/A	unknown function
UniRef90	UHGV-1972001_9	UniRef90_A0A374HLL3	92.0	9.78e-24	XkdX family protein	N/A
eggNOG-mapper	UHGV-1972001_9	1298920.KI911353_gene543	61.2	0.00000000000258	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-1972001_9	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-1972001_9	PF09693,TIGR01669	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1972001_11	1410617.JHXH01000006_gene232	79.0	0.00000000000122	N/A	N/A
structural_annotation	UHGV-1972001_11	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1972001_13	phrog_9680	54.0	9.9e-17	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1972001_13	1160721.RBI_II00526	512.0	0	N/A	N/A
structural_annotation	UHGV-1972001_13	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1972001_14	phrog_1194	89.7	2.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-1972001_14	1160721.RBI_II00527	207.0	0	N/A	N/A
structural_annotation	UHGV-1972001_14	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1972001_15	phrog_1535	309.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1972001_15	UniRef90_R6TDK7	1291.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-1972001_15	1226322.HMPREF1545_00059	417.0	0	tape measure	N/A
COG	UHGV-1972001_15	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1972001_15	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1972001_16	phrog_706	146.2	1.79366e-43	N/A	unknown function
UniRef90	UHGV-1972001_16	UniRef90_UPI001B3C82AE	219.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1972001_16	1449050.JNLE01000003_gene3882	200.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1972001_16	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1972001_16	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1972001_17	phrog_11299	184.0	0	N/A	unknown function
structural_annotation	UHGV-1972001_17	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-1972001_18	phrog_3099	150.8	5.60519e-45	N/A	unknown function
eggNOG-mapper	UHGV-1972001_18	1160721.RBI_II00532	209.0	0	N/A	N/A
structural_annotation	UHGV-1972001_18	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1972001_19	phrog_3266	122.5	2e-36	tail completion	connector
eggNOG-mapper	UHGV-1972001_19	411902.CLOBOL_00130	112.0	1.53e-29	N/A	N/A
structural_annotation	UHGV-1972001_19	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1972001_20	phrog_556	121.8	2.6e-36	minor head protein	head and packaging
UniRef90	UHGV-1972001_20	UniRef90_UPI00143BEF55	126.0	1.71e-34	minor capsid protein	N/A
eggNOG-mapper	UHGV-1972001_20	1449050.JNLE01000003_gene3886	110.0	7.92e-29	N/A	N/A
Pfam	UHGV-1972001_20	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1972001_20	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1972001_21	phrog_3366	74.5	1.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-1972001_21	1449050.JNLE01000003_gene3887	82.4	1.09e-18	N/A	N/A
Pfam	UHGV-1972001_21	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1972001_21	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1972001_22	phrog_541	90.9	1.1e-26	head-tail adaptor	connector
UniRef90	UHGV-1972001_22	UniRef90_A0A371AQT0	104.0	1.23e-26	N/A	N/A
eggNOG-mapper	UHGV-1972001_22	1304866.K413DRAFT_3039	95.1	1.41e-23	N/A	N/A
PHROG	UHGV-1972001_23	phrog_544	344.9	0	major head protein	head and packaging
UniRef90	UHGV-1972001_23	UniRef90_R6T873	667.0	0	Major head protein	N/A
eggNOG-mapper	UHGV-1972001_23	936580.HMPREF1516_0718	312.0	0	N/A	N/A
NCBIFam	UHGV-1972001_23	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1972001_23	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1972001_24	phrog_194	102.2	5.9e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-1972001_24	UniRef90_R6U550	375.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1972001_24	742765.HMPREF9457_02126	154.0	8.40779e-45	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1972001_24	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1972001_24	PF06810	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1972001_25	PF12305	N/A	N/A	N/A	N/A
PHROG	UHGV-1972001_26	phrog_581	335.3	0	minor head protein	head and packaging
UniRef90	UHGV-1972001_26	UniRef90_R6SXL7	989.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1972001_26	658655.HMPREF0988_02563	408.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1972001_26	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1972001_26	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1972001_26	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1972001_27	phrog_533	342.5	0	portal protein	head and packaging
UniRef90	UHGV-1972001_27	UniRef90_R6TDI6	887.0	0	Phage portal protein SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-1972001_27	1304866.K413DRAFT_3035	435.0	0	N/A	N/A
structural_annotation	UHGV-1972001_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1972001_28	K06909	422.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1972001_28	phrog_18557	160.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1972001_28	UniRef90_A0A1C6IMR2	1105.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1972001_28	411461.DORFOR_01162	667.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1972001_28	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1972001_28	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1972001_28	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1972001_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1972001_28	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1972001	Yes	23,400	45	66	1