vOTU vOTU-151297

vOTU: vOTU-151297

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-151297
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00239 → vGENUS-05492 → vOTU-151297
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0157828
Biosample ID	N/A
Genome length (bp)	27,426 bps
CheckV completeness	68.23% (Medium-quality)
CDS count	42
CDS density	94.18%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E	Total connections	1813	Host agreement	96.08
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	104	Host agreement	94.23

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 68.23)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0157828_1	phrog_8	60.5	4.4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0157828_1	UniRef90_A0A2N0ULV0	160.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0157828_1	445335.CBN_3090	56.6	0.00000000418	Helix-turn-helix domain	N/A
Pfam	UHGV-0157828_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0157828_1	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0157828_4	K03546	57.1	1.7e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0157828_4	phrog_1499	472.9	0	N/A	unknown function
UniRef90	UHGV-0157828_4	UniRef90_A0A2N0UXU2	744.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0157828_4	645991.Sgly_0320	503.0	0	domain protein	N/A
Pfam	UHGV-0157828_4	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0157828_4	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0157828_4	TIGR03185,COG5293	N/A	N/A	N/A	N/A
PHROG	UHGV-0157828_6	phrog_124	260.1	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157828_6	UniRef90_UPI001896F7FA	731.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0157828_6	1123304.AQYA01000037_gene196	429.0	0	AAA domain	N/A
Pfam	UHGV-0157828_6	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0157828_6	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0157828_7	phrog_2698	174.6	0	N/A	unknown function
UniRef90	UHGV-0157828_7	UniRef90_UPI000F54335B	196.0	0	N/A	N/A
eggNOG-mapper	UHGV-0157828_7	742723.HMPREF9477_00927	135.0	2.42e-38	N/A	N/A
structural_annotation	UHGV-0157828_7	PF17426,NF005674	N/A	N/A	N/A	N/A
KOfam	UHGV-0157828_8	K17677	360.5	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0157828_8	phrog_16	291.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157828_8	UniRef90_A0A412ULZ3	1043.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0157828_8	1235798.C817_03499	838.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0157828_8	mREase_IV_00005	130.9	1.3e-38	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0157828_8	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0157828_8	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0157828_8	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0157828_8	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-0157828_9	K07505	410.5	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0157828_9	phrog_2597	1174.5	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157828_9	UniRef90_A0A2N0UXP7	1358.0	0	Regulatory protein RepA	N/A
eggNOG-mapper	UHGV-0157828_9	394503.Ccel_3304	991.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0157828_9	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0157828_9	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0157828_9	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0157828_9	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0157828_10	K01160	41.1	0.000000000049	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0157828_10	phrog_140	95.1	8.3e-28	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157828_10	UniRef90_A0A2N0UXU6	258.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0157828_10	411462.DORLON_00806	205.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0157828_10	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0157828_10	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0157828_10	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157828_11	PF08141,MF_00667,TIGR02861,COG0231	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157828_12	PF02796,NF008548	N/A	N/A	N/A	N/A
PHROG	UHGV-0157828_13	phrog_323	71.6	1.4e-27	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157828_13	UniRef90_UPI001C01CFF8	317.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-0157828_13	756499.Desde_1065	354.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
dbAPIS	UHGV-0157828_13	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-0157828_13	PF11112,NF040595	N/A	N/A	N/A	N/A
PHROG	UHGV-0157828_14	phrog_25754	67.6	6.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0157828_14	97139.C824_00736	71.6	0.00000000000001	N/A	N/A
structural_annotation	UHGV-0157828_14	PF10842,MF_00436,TIGR02383	N/A	N/A	N/A	N/A
PHROG	UHGV-0157828_15	phrog_599	45.0	0.0000000000023	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0157828_15	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0157828_15	PF14354,TIGR03655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0157828_20	1035196.HMPREF9998_01748	49.3	0.000000667	methyltransferase	N/A
COG	UHGV-0157828_20	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
PHROG	UHGV-0157828_21	phrog_2245	91.6	8.7e-27	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0157828_21	UniRef90_A0A844JSD9	58.5	0.00000000429	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-0157828_21	926561.KB900623_gene754	64.7	0.00000000000259	N/A	N/A
structural_annotation	UHGV-0157828_21	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
PHROG	UHGV-0157828_24	phrog_8	50.2	0.000000000000061	transcriptional regulator	transcription regulation
UniRef90	UHGV-0157828_24	UniRef90_A0A412LC59	53.9	0.0000000385	XRE family transcriptional regulator	N/A
Pfam	UHGV-0157828_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0157828_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0157828_24	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0157828_25	phrog_119	52.2	0.0000000000000093	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0157828_25	UniRef90_A0A374N9T6	165.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0157828_25	1235793.C809_01915	123.0	8.72e-35	HNH endonuclease	N/A
Pfam	UHGV-0157828_25	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0157828_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0157828_26	phrog_1066	115.6	2.5e-34	N/A	unknown function
UniRef90	UHGV-0157828_26	UniRef90_A0A0D0SQQ8	84.3	1.41e-18	N/A	N/A
eggNOG-mapper	UHGV-0157828_26	1203606.HMPREF1526_00982	104.0	1.89e-27	N/A	N/A
PHROG	UHGV-0157828_27	phrog_9	394.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0157828_27	UniRef90_A0A374NB45	977.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0157828_27	1235793.C809_01917	719.0	0	Phage Terminase	N/A
Pfam	UHGV-0157828_27	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0157828_27	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0157828_27	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0157828_27	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0157828_28	phrog_12	178.3	0	portal protein	head and packaging
UniRef90	UHGV-0157828_28	UniRef90_A0A374NAE1	770.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0157828_28	626523.GCWU000342_01027	407.0	0	Portal protein	N/A
Pfam	UHGV-0157828_28	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0157828_28	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0157828_28	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0157828_29	phrog_21498	301.8	0	N/A	unknown function
UniRef90	UHGV-0157828_29	UniRef90_C7MM70	240.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-0157828_29	469378.Ccur_02830	240.0	0	DNA binding	N/A
COG	UHGV-0157828_29	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0157828_29	PF05869,TIGR01712	N/A	N/A	N/A	N/A
KOfam	UHGV-0157828_30	K01358	119.5	4.4e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0157828_30	phrog_94	187.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0157828_30	UniRef90_A0A374NBM3	401.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0157828_30	1203606.HMPREF1526_00979	172.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0157828_30	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0157828_30	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0157828_30	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0157828_31	phrog_10	151.3	8.40779e-45	major head protein	head and packaging
UniRef90	UHGV-0157828_31	UniRef90_A0A374N9V9	732.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0157828_31	1280689.AUJC01000011_gene1521	333.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0157828_31	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0157828_31	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0157828_31	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0157828_31	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0157828_32	phrog_5223	54.4	0.0000000000000019	neck protein	connector
eggNOG-mapper	UHGV-0157828_32	931626.Awo_c31020	47.8	0.00000905	N/A	N/A
NCBIFam	UHGV-0157828_32	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0157828_32	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0157828_33	phrog_1951	95.6	3.1e-28	head-tail adaptor	connector
UniRef90	UHGV-0157828_33	UniRef90_A0A374MZF9	184.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0157828_33	1414720.CBYM010000040_gene1649	65.1	0.00000000000282	head-tail adaptor	N/A
COG	UHGV-0157828_33	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0157828_33	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157828_34	UniRef90_UPI001A9B6FBF	163.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0157828_34	642492.Clole_0747	133.0	5.02e-38	N/A	N/A
structural_annotation	UHGV-0157828_34	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0157828_35	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0157828_36	phrog_885	134.5	7e-40	major tail protein	tail
UniRef90	UHGV-0157828_36	UniRef90_A0A101Y2E4	160.0	5.60519e-45	Big_5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0157828_36	1321814.HMPREF9089_00935	177.0	0	N/A	N/A
structural_annotation	UHGV-0157828_36	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0157828_37	272562.CA_C0058	49.3	0.00000532	N/A	N/A
PHROG	UHGV-0157828_39	phrog_23464	252.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0157828_39	665950.HMPREF1025_02660	179.0	1.26117e-44	phage tail tape measure protein	N/A
COG	UHGV-0157828_39	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0157828_39	COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0157828_40	phrog_33	80.1	5.1e-23	distal tail protein Dit	tail
UniRef90	UHGV-0157828_40	UniRef90_UPI00189E4294	81.6	0.00000000000000539	phage tail family protein	N/A
eggNOG-mapper	UHGV-0157828_40	1160721.RBI_I01575	84.7	6.43e-17	Phage tail protein	N/A
COG	UHGV-0157828_40	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0157828_40	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0157828_41	phrog_1067	119.1	4.1e-35	minor head protein	head and packaging
UniRef90	UHGV-0157828_41	UniRef90_A0A348ZBV6	204.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0157828_41	1160721.RBI_I01574	125.0	9.73e-29	Prophage endopeptidase tail	N/A
Pfam	UHGV-0157828_41	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0157828_41	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0157828_41	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0157828_41	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0157828_42	UniRef90_A0A1C6HHE5	104.0	3.57e-22	BppU_N domain-containing protein	N/A
Pfam	UHGV-0157828_42	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0157828	Yes	27,426	41	68	1