vOTU vOTU-151322

vOTU: vOTU-151322

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-151322
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-05966 → vGENUS-14142 → vOTU-151322
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Host range breadth	Family
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0173788
Biosample ID	SAMN09781790
Genome length (bp)	31,332 bps
CheckV completeness	77.74% (Medium-quality)
CDS count	51
CDS density	92.64%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	98	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 77.74)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0173788_1	K07474	57.7	4.3e-16	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0173788_1	phrog_51	54.1	0.0000000000000027	terminase small subunit	head and packaging
UniRef90	UHGV-0173788_1	UniRef90_UPI001D05F697	124.0	1.27e-34	terminase small subunit	N/A
Pfam	UHGV-0173788_1	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0173788_1	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
KOfam	UHGV-0173788_2	K06909	378.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0173788_2	phrog_3717	157.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0173788_2	UniRef90_A0A4D7AZ70	724.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0173788_2	411461.DORFOR_01162	455.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0173788_2	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0173788_2	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0173788_2	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0173788_2	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0173788_2	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0173788_3	phrog_64	163.6	0	portal protein	head and packaging
UniRef90	UHGV-0173788_3	UniRef90_UPI0018A8A301	599.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0173788_3	1235800.C819_02239	88.6	5.09e-16	phage portal protein, SPP1	N/A
Pfam	UHGV-0173788_3	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0173788_3	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0173788_4	phrog_115	108.3	3.9e-32	minor head protein	head and packaging
UniRef90	UHGV-0173788_4	UniRef90_A0A810PSD3	610.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0173788_4	1111121.HMPREF1247_0797	197.0	0	cell adhesion	N/A
Pfam	UHGV-0173788_4	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0173788_4	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0173788_4	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173788_4	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173788_5	UniRef90_D4JVI7	109.0	5.66e-27	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0173788_5	1042156.CXIVA_01840	67.0	0.0000000000755	Phage Mu protein F like protein	N/A
COG	UHGV-0173788_5	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0173788_6	phrog_5	71.0	2.4e-20	tail completion or Neck1 protein	connector
UniRef90	UHGV-0173788_6	UniRef90_A0A4D7AJK9	195.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0173788_6	386415.NT01CX_2170	109.0	4.83e-29	N/A	N/A
Pfam	UHGV-0173788_6	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0173788_6	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0173788_6	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173788_8	UniRef90_A0A6B9SU02	79.3	0.00000000000000869	Fibronectin autolysin	N/A
structural_annotation	UHGV-0173788_8	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0173788_9	phrog_544	180.6	0	major head protein	head and packaging
UniRef90	UHGV-0173788_9	UniRef90_A0A810PZM2	727.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0173788_9	1347392.CCEZ01000005_gene1236	276.0	0	N/A	N/A
Pfam	UHGV-0173788_9	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0173788_9	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0173788_11	phrog_17977	73.1	3.1e-21	N/A	unknown function
UniRef90	UHGV-0173788_11	UniRef90_A0A285PT57	92.0	9.59e-22	Phage head-tail joining protein	N/A
structural_annotation	UHGV-0173788_11	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0173788_12	phrog_17405	43.0	0.0000000000074	head protein	head and packaging
UniRef90	UHGV-0173788_12	UniRef90_A0A415JI88	117.0	1.33e-31	N/A	N/A
structural_annotation	UHGV-0173788_12	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0173788_13	phrog_885	74.7	6.1e-22	major tail protein	tail
UniRef90	UHGV-0173788_13	UniRef90_A0A843J9F0	231.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0173788_13	1504822.CCNO01000012_gene492	256.0	0	N/A	N/A
structural_annotation	UHGV-0173788_13	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0173788_14	phrog_18646	80.1	2.7e-23	N/A	unknown function
UniRef90	UHGV-0173788_14	UniRef90_B6CXF0	90.5	4.3e-21	Peptidase-colicin	N/A
PHROG	UHGV-0173788_16	phrog_6900	257.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0173788_16	1499683.CCFF01000017_gene2565	267.0	0	tape measure	N/A
COG	UHGV-0173788_16	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173788_17	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0173788_18	phrog_32308	66.0	4.1e-19	N/A	unknown function
UniRef90	UHGV-0173788_18	UniRef90_A0A856HZ25	215.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0173788_18	1117108.PAALTS15_13507	68.2	0.0000000054	N/A	N/A
Pfam	UHGV-0173788_18	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0173788_18	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0173788_19	1408437.JNJN01000002_gene1389	58.9	0.000000689	N/A	N/A
eggNOG-mapper	UHGV-0173788_22	1203606.HMPREF1526_01926	89.4	1.21e-19	N/A	N/A
Pfam	UHGV-0173788_22	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0173788_22	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0173788_23	phrog_1863	44.4	0.0000000000021	N/A	unknown function
eggNOG-mapper	UHGV-0173788_23	552398.HMPREF0866_01158	58.2	0.000000000158	N/A	N/A
PHROG	UHGV-0173788_24	phrog_881	65.2	6.9e-19	holin	lysis
UniRef90	UHGV-0173788_24	UniRef90_UPI000C83DA00	57.4	0.0000000029	holin	N/A
Pfam	UHGV-0173788_24	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0173788_24	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0173788_25	phrog_37691	63.7	3.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-0173788_25	1235797.C816_02841	66.6	0.000000000000527	N/A	N/A
PHROG	UHGV-0173788_26	phrog_9589	122.0	6.8e-36	endolysin	lysis
UniRef90	UHGV-0173788_26	UniRef90_UPI001679BF7D	137.0	6.03e-37	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0173788_26	633697.EubceDRAFT1_2756	122.0	2.34e-29	CHAP domain	N/A
Pfam	UHGV-0173788_26	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0173788_26	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
KOfam	UHGV-0173788_27	K14059	171.7	0	int; integrase	N/A
PHROG	UHGV-0173788_27	phrog_1	174.8	0	integrase	integration and excision
UniRef90	UHGV-0173788_27	UniRef90_A0A1C5N3H1	138.0	1.17e-33	Integrase	N/A
eggNOG-mapper	UHGV-0173788_27	428126.CLOSPI_00819	100.0	7.86e-21	Phage integrase family	N/A
Pfam	UHGV-0173788_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0173788_27	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0173788_27	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0173788_28	TIGR04165,COG3478	N/A	N/A	N/A	N/A
KOfam	UHGV-0173788_29	K07504	81.0	1.7e-23	K07504; predicted type IV restriction endonuclease	N/A
PHROG	UHGV-0173788_29	phrog_17239	327.2	0	N/A	unknown function
UniRef90	UHGV-0173788_29	UniRef90_A0A7X7LKN5	315.0	0	Type I restriction enzyme HsdR N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0173788_29	913325.N799_09925	267.0	0	stress, protein	N/A
Pfam	UHGV-0173788_29	PF13588	N/A	N/A	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N_2
COG	UHGV-0173788_29	COG2810	N/A	N/A	Predicted type IV restriction endonuclease	N/A
structural_annotation	UHGV-0173788_29	PF13588,NF007086,COG4748	N/A	N/A	N/A	N/A
KOfam	UHGV-0173788_30	K01356	171.8	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0173788_30	phrog_4	156.5	0	transcriptional repressor	transcription regulation
UniRef90	UHGV-0173788_30	UniRef90_A7VTE0	258.0	0	LexA family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0173788_30	428125.CLOLEP_01832	258.0	0	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-0173788_30	retron_type_VI_hth_cluster2_1	41.5	0.000000000026	N/A	Retron
Pfam	UHGV-0173788_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0173788_30	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0173788_30	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0173788_30	PF01381,PF00717,MF_00015,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0173788_31	K22300	59.0	1.1e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0173788_31	phrog_8	53.0	0.0000000000000091	transcriptional regulator	transcription regulation
UniRef90	UHGV-0173788_31	UniRef90_UPI000F0D19B9	70.5	0.0000000000000147	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0173788_31	1392502.JNIO01000002_gene278	61.2	0.00000000000847	sequence-specific DNA binding	N/A
Pfam	UHGV-0173788_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0173788_31	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0173788_31	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173788_32	UniRef90_A0A4S2AGE3	48.9	0.00000128	Ribbon-helix-helix protein, CopG family	N/A
structural_annotation	UHGV-0173788_33	PF03869,NF008671,COG4877	N/A	N/A	N/A	N/A
Pfam	UHGV-0173788_36	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0173788_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0173788_36	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0173788_39	phrog_4433	177.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0173788_39	33035.JPJF01000122_gene2458	145.0	3.75e-38	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0173788_39	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0173788_39	PF12120,NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-0173788_40	phrog_7838	82.1	9.1e-36	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173788_40	UniRef90_G8I6K1	87.8	0.00000000000000954	DNA primase	N/A
eggNOG-mapper	UHGV-0173788_40	742767.HMPREF9456_02397	126.0	1.2e-30	N/A	N/A
KOfam	UHGV-0173788_41	K03111	140.5	1.90002e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0173788_41	phrog_44	139.6	2.09999e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173788_41	UniRef90_A0A7X7M7M8	131.0	1.19e-36	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0173788_41	1203606.HMPREF1526_00987	124.0	1.76e-34	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0173788_41	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0173788_41	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0173788_41	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0173788_41	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0173788_41	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0173788_42	phrog_72	40.2	0.000000000033	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0173788_42	1304866.K413DRAFT_1197	90.9	7.8e-21	N/A	N/A
structural_annotation	UHGV-0173788_42	PF05772	N/A	N/A	N/A	N/A
KOfam	UHGV-0173788_43	K07451	40.7	0.000000000045	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0173788_43	phrog_7370	71.9	8.6e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173788_43	UniRef90_UPI00082FB90B	119.0	3.72e-33	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0173788_43	445972.ANACOL_01826	116.0	8.15e-33	HNH nucleases	N/A
Pfam	UHGV-0173788_43	PF14279	N/A	N/A	HNH endonuclease	HNH_5
PHROG	UHGV-0173788_44	phrog_16304	70.3	3.9e-20	N/A	unknown function
eggNOG-mapper	UHGV-0173788_44	1226322.HMPREF1545_00016	53.5	0.00000743	HNH endonuclease	N/A
Pfam	UHGV-0173788_44	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0173788_44	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
COG	UHGV-0173788_44	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0173788_44	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0173788_45	K01160	41.5	0.000000000036	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0173788_45	phrog_34	47.6	0.00000000000033	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0173788_45	UniRef90_UPI0008388C3B	68.9	0.00000000000154	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0173788_45	1120985.AUMI01000019_gene2247	66.6	0.00000000000251	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0173788_45	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0173788_45	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
UniRef90	UHGV-0173788_46	UniRef90_D2MZA6	53.5	0.0000000254	Site-specific DNA-methyltransferase, putative	N/A
eggNOG-mapper	UHGV-0173788_46	1231377.C426_1710	62.0	0.0000000000654	DNA methylase	N/A
COG	UHGV-0173788_46	COG0863	N/A	N/A	DNA modification methylase	N/A
PHROG	UHGV-0173788_47	phrog_1233	86.3	4e-25	N/A	unknown function
UniRef90	UHGV-0173788_47	UniRef90_UPI001C39EFB9	112.0	1.47e-29	Dienelactone hydrolase family protein	N/A
eggNOG-mapper	UHGV-0173788_47	357809.Cphy_2967	134.0	3.11e-39	N/A	N/A
PHROG	UHGV-0173788_48	phrog_38832	115.0	5e-34	N/A	unknown function
eggNOG-mapper	UHGV-0173788_48	665956.HMPREF1032_00143	121.0	1.48e-32	N/A	N/A
structural_annotation	UHGV-0173788_48	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-0173788_49	phrog_3136	129.1	1.5e-38	N/A	unknown function
UniRef90	UHGV-0173788_49	UniRef90_A0A6N7TMC2	139.0	5.08e-38	ASCH domain-containing protein	N/A
COG	UHGV-0173788_49	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0173788_49	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0173788_50	K19779	40.8	0.000000000035	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0173788_50	phrog_599	47.8	0.00000000000035	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0173788_50	UniRef90_UPI000DCC136D	60.1	0.000000000113	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0173788_50	1116482.K9L505_9CAUD	48.9	0.0000019	Restriction alleviation protein Lar	N/A
Pfam	UHGV-0173788_50	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0173788_50	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0173788_50	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0173788_50	PF14354,NF007260	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0173788	Yes	31,332	48	78	1