vOTU vOTU-151441

vOTU: vOTU-151441

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-151441
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci
Taxonomy (UHGV)	vFAM-00062 → vSUBFAM-00170 → vGENUS-00088 → vOTU-151441
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0177420
Biosample ID	SAMN09781789
Genome length (bp)	36,381 bps
CheckV completeness	81.00% (Medium-quality)
CDS count	60
CDS density	92.32%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella	Total connections	229	Host agreement	97.38
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci	Total connections	18	Host agreement	72.22

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 81)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0177420_1	phrog_478	105.9	2.6e-31	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0177420_1	UniRef90_A0A0J8Z1B9	178.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0177420_1	272623.L62008	79.0	5.42e-17	N/A	N/A
UniRef90	UHGV-0177420_2	UniRef90_A0A413UEX6	291.0	0	N/A	N/A
Pfam	UHGV-0177420_2	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0177420_2	PF07374,NF008895	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177420_6	PF11061	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177420_9	PF17399	N/A	N/A	N/A	N/A
PHROG	UHGV-0177420_12	phrog_4601	44.6	0.0000000000024	N/A	unknown function
structural_annotation	UHGV-0177420_12	PF17888	N/A	N/A	N/A	N/A
PHROG	UHGV-0177420_13	phrog_173	89.1	6.6e-26	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177420_13	UniRef90_UPI001D0A0924	268.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0177420_13	218284.CCDN010000001_gene545	64.7	0.000000000081	dUTPase	N/A
Pfam	UHGV-0177420_13	PF08761	N/A	N/A	dUTPase	dUTPase_2
COG	UHGV-0177420_13	COG4508	N/A	N/A	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	N/A
structural_annotation	UHGV-0177420_13	PF08761,COG4508	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177420_14	PF11184	N/A	N/A	N/A	N/A
PHROG	UHGV-0177420_15	phrog_774	64.3	1.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-0177420_15	397290.C810_05225	68.6	0.000000000000456	N/A	N/A
KOfam	UHGV-0177420_16	K00390	80.7	1.3e-23	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0177420_16	phrog_424	106.5	2.4e-31	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0177420_16	UniRef90_A0A374RXA8	404.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-0177420_16	1410650.JHWL01000037_gene595	296.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
PADLOC	UHGV-0177420_16	BrxP_00001	41.1	0.0000000000000056	BrxP	BREX
Pfam	UHGV-0177420_16	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0177420_16	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0177420_16	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0177420_19	K02315	120.6	1.9e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0177420_19	phrog_50	107.1	2e-31	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177420_19	UniRef90_A0A395WER8	523.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-0177420_19	1232446.BAIE02000011_gene1611	130.0	9.59e-34	N/A	N/A
Pfam	UHGV-0177420_19	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-0177420_19	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0177420_19	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0177420_20	phrog_428	145.8	3.79752e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177420_20	UniRef90_A0A395WBX6	491.0	0	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0177420_20	279808.SH2379	143.0	9.74e-39	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0177420_20	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0177420_20	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0177420_20	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0177420_20	PF09524,PF08679,MF_01909,TIGR02220,NF040939,COG1675	N/A	N/A	N/A	N/A
KOfam	UHGV-0177420_22	K04763	137.6	1.4e-40	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0177420_22	phrog_1	117.7	1.3e-34	integrase	integration and excision
UniRef90	UHGV-0177420_22	UniRef90_A0A395W9T7	572.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0177420_22	908340.HMPREF9406_2589	230.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0177420_22	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0177420_22	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0177420_22	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0177420_26	K18830	60.2	3.2e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0177420_26	phrog_8	45.7	0.00000000000084	transcriptional regulator	transcription regulation
UniRef90	UHGV-0177420_26	UniRef90_A0A395WA05	257.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0177420_26	999413.HMPREF1094_02045	96.7	6.31e-24	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0177420_26	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0177420_26	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0177420_26	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0177420_27	UniRef90_A0A4R1RC20	107.0	4.39e-26	Putative heavy-metal-binding protein	N/A
eggNOG-mapper	UHGV-0177420_27	517418.Ctha_1419	105.0	8.38e-24	Putative heavy-metal-binding	N/A
Pfam	UHGV-0177420_27	PF01906	N/A	N/A	Putative heavy-metal-binding	YbjQ_1
COG	UHGV-0177420_27	COG0393	N/A	N/A	N/A	N/A
KOfam	UHGV-0177420_28	K14059	197.4	0	int; integrase	N/A
PHROG	UHGV-0177420_28	phrog_1	178.1	0	integrase	integration and excision
UniRef90	UHGV-0177420_28	UniRef90_A0A395WBW7	743.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0177420_28	1235796.C815_00955	300.0	0	DNA integration	N/A
Pfam	UHGV-0177420_28	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0177420_28	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0177420_28	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0177420_29	K01447	60.8	2.9e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0177420_29	phrog_7698	153.6	1.4013e-45	endolysin	lysis
UniRef90	UHGV-0177420_29	UniRef90_UPI001D0AA402	545.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0177420_29	1125712.HMPREF1316_2631	145.0	2.41e-40	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0177420_29	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0177420_29	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0177420_29	COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0177420_31	phrog_443	53.4	0.0000000000000075	holin	lysis
UniRef90	UHGV-0177420_31	UniRef90_A0A2U2ELA1	78.2	1.3e-17	Membrane protein	N/A
eggNOG-mapper	UHGV-0177420_31	476272.RUMHYD_01759	84.3	1.09e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0177420_31	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0177420_31	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0177420_33	phrog_20016	62.6	5.3e-18	N/A	unknown function
UniRef90	UHGV-0177420_33	UniRef90_A0A395WF88	255.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0177420_33	1226322.HMPREF1545_00077	57.4	0.0000000172	N/A	N/A
Pfam	UHGV-0177420_33	PF18573	N/A	N/A	BclA C-terminal domain	BclA_C
structural_annotation	UHGV-0177420_33	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0177420_34	UniRef90_A0A8F0WFQ8	68.2	0.000000000358	Outer capsid protein/viral fiber	N/A
eggNOG-mapper	UHGV-0177420_34	476272.RUMHYD_01770	107.0	5.76e-26	N/A	N/A
PHROG	UHGV-0177420_39	phrog_24451	102.0	3.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-0177420_39	908340.HMPREF9406_2565	92.0	1.13e-22	N/A	N/A
PHROG	UHGV-0177420_40	phrog_4492	51.1	0.0000000000000037	tail fiber protein	tail
eggNOG-mapper	UHGV-0177420_40	756499.Desde_1105	65.9	0.00000000708	N/A	N/A
structural_annotation	UHGV-0177420_40	PF03425,NF033675	N/A	N/A	N/A	N/A
PHROG	UHGV-0177420_43	phrog_19280	82.3	5.7e-24	N/A	unknown function
UniRef90	UHGV-0177420_43	UniRef90_A0A413UF00	634.0	0	N/A	N/A
Pfam	UHGV-0177420_43	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0177420_43	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0177420_44	1232452.BAIB02000007_gene1610	64.7	0.00000000619	N/A	N/A
structural_annotation	UHGV-0177420_45	PF16407,TIGR02657,COG3794	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177420_46	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0177420_47	537007.BLAHAN_05252	57.4	0.000000339	N/A	N/A
structural_annotation	UHGV-0177420_47	PF10651,COG5513	N/A	N/A	N/A	N/A
PHROG	UHGV-0177420_48	phrog_1067	49.7	9.9e-25	minor head protein	head and packaging
eggNOG-mapper	UHGV-0177420_48	1232446.BAIE02000002_gene836	62.8	0.000000186	Phage minor structural protein	N/A
Pfam	UHGV-0177420_48	PF14200	N/A	N/A	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
NCBIFam	UHGV-0177420_48	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0177420_48	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0177420_48	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0177420_49	phrog_33	48.7	0.00000000000019	distal tail protein Dit	tail
UniRef90	UHGV-0177420_49	UniRef90_A0A1C6JHE5	62.8	0.000000041	Phage-related protein	N/A
Pfam	UHGV-0177420_49	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0177420_49	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0177420_49	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0177420_49	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0177420_50	K20282	60.2	6.5e-18	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-0177420_50	phrog_13339	336.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0177420_50	UniRef90_A0A395WD11	994.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0177420_50	764299.STRIC_0111	241.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0177420_50	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0177420_50	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0177420_50	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0177420_50	PF10145,TIGR01760,TIGR02971,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177420_52	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0177420_53	phrog_88	140.9	7.29936e-42	major tail protein	tail
UniRef90	UHGV-0177420_53	UniRef90_A0A395WA58	397.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0177420_53	1033744.CAEL01000029_gene1276	155.0	4.2039e-45	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0177420_53	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0177420_53	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0177420_54	UniRef90_A0A374RUJ8	140.0	2.9e-40	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0177420_54	86416.Clopa_0344	55.8	0.0000000486	N/A	N/A
structural_annotation	UHGV-0177420_54	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0177420_55	1145276.T479_19945	49.7	0.00000335	N/A	N/A
structural_annotation	UHGV-0177420_55	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0177420_56	phrog_1951	72.6	4e-21	head-tail adaptor	connector
UniRef90	UHGV-0177420_56	UniRef90_A0A395WC07	224.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0177420_56	1243664.CAVL020000054_gene3020	60.5	0.000000000195	head-tail adaptor	N/A
NCBIFam	UHGV-0177420_56	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0177420_56	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0177420_56	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0177420_57	phrog_5223	51.2	0.000000000000019	neck protein	connector
UniRef90	UHGV-0177420_57	UniRef90_A0A374RXD1	83.2	7.66e-19	DNA-packaging protein	N/A
structural_annotation	UHGV-0177420_57	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0177420_58	phrog_10	79.3	5.7e-23	major head protein	head and packaging
UniRef90	UHGV-0177420_58	UniRef90_A0A395WF70	786.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0177420_58	1536774.H70357_10630	164.0	2.55036e-43	Phage capsid family	N/A
Pfam	UHGV-0177420_58	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0177420_58	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0177420_58	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0177420_58	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0177420_59	K06904	88.7	8.8e-26	N/A	N/A
PHROG	UHGV-0177420_59	phrog_80	120.8	1.9e-35	head maturation protease	head and packaging
UniRef90	UHGV-0177420_59	UniRef90_A0A413UET6	348.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0177420_59	445975.COLSTE_02163	173.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0177420_59	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0177420_59	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0177420_59	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0177420_59	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0177420_60	phrog_12	48.6	0.000000000000082	portal protein	head and packaging
UniRef90	UHGV-0177420_60	UniRef90_A0A395W9X2	446.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0177420_60	561177.ANHYDRO_01407	172.0	0	Phage portal protein	N/A
COG	UHGV-0177420_60	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0177420_60	PF04860,COG4695	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0177420	Yes	36,381	33	81	1