vOTU vOTU-152301

vOTU: vOTU-152301

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-152301
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01291 → vGENUS-03412 → vOTU-152301
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0032760
Biosample ID	N/A
Genome length (bp)	31,408 bps
CheckV completeness	76.48% (Medium-quality)
CDS count	44
CDS density	94.21%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1441	Host agreement	80.5
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 76.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0032760_1	UniRef90_A0A374N9Y2	219.0	0	N/A	N/A
structural_annotation	UHGV-0032760_1	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
PHROG	UHGV-0032760_2	phrog_1067	103.2	5.3e-31	minor head protein	head and packaging
UniRef90	UHGV-0032760_2	UniRef90_A0A348ZBV6	151.0	1.32e-38	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0032760_2	1462527.CCDM010000003_gene3730	68.2	0.00000000218	gp58-like protein	N/A
Pfam	UHGV-0032760_2	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0032760_2	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0032760_2	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032760_2	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0032760_3	phrog_33	81.2	2.1e-23	distal tail protein Dit	tail
UniRef90	UHGV-0032760_3	UniRef90_A0A1G5CPA2	139.0	1.99e-36	Phage-related protein	N/A
eggNOG-mapper	UHGV-0032760_3	1160721.RBI_I01575	89.4	1.85e-18	Phage tail protein	N/A
COG	UHGV-0032760_3	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0032760_3	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0032760_4	K20283	58.0	2.2e-17	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0032760_4	phrog_1272	279.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0032760_4	UniRef90_A0A412ULX0	1919.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0032760_4	588581.Cpap_1264	216.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0032760_4	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0032760_4	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0032760_4	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032760_5	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0032760_6	phrog_88	70.3	2.6e-20	major tail protein	tail
UniRef90	UHGV-0032760_6	UniRef90_A0A1G5CNS8	147.0	6.56004e-41	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0032760_6	1321782.HMPREF1986_01362	67.8	0.0000000000282	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0032760_6	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0032760_6	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032760_7	UniRef90_UPI000E5564A4	275.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-0032760_7	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0032760_7	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032760_8	272623.L59277	52.0	0.000000426	N/A	N/A
structural_annotation	UHGV-0032760_8	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0032760_9	phrog_19734	71.8	8.3e-21	N/A	unknown function
UniRef90	UHGV-0032760_9	UniRef90_UPI00057FE645	58.9	0.00000000622	phage head closure protein	N/A
eggNOG-mapper	UHGV-0032760_9	86416.Clopa_0343	60.8	0.000000000224	N/A	N/A
NCBIFam	UHGV-0032760_9	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0032760_9	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0032760_10	phrog_749	54.2	0.0000000000000022	N/A	unknown function
UniRef90	UHGV-0032760_10	UniRef90_A0A1G5CMX8	108.0	7.47e-29	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0032760_10	1211817.CCAT010000053_gene2133	58.9	0.000000000584	N/A	N/A
PHROG	UHGV-0032760_11	phrog_10	124.4	1e-36	major head protein	head and packaging
UniRef90	UHGV-0032760_11	UniRef90_A0A412ULW9	732.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0032760_11	1211817.CCAT010000053_gene2132	317.0	0	Phage capsid family	N/A
Pfam	UHGV-0032760_11	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0032760_11	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0032760_11	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0032760_11	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0032760_12	K01358	138.9	4.69996e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0032760_12	phrog_94	205.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0032760_12	UniRef90_A0A412ULU1	470.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0032760_12	1211817.CCAT010000053_gene2131	181.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0032760_12	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0032760_12	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0032760_12	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0032760_13	phrog_12	97.7	9.8e-29	portal protein	head and packaging
UniRef90	UHGV-0032760_13	UniRef90_A0A412ULV9	739.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0032760_13	1415774.U728_1254	259.0	0	Phage portal protein	N/A
Pfam	UHGV-0032760_13	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0032760_13	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0032760_13	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0032760_13	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0032760_14	phrog_9	300.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0032760_14	UniRef90_A0A412UM03	1012.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0032760_14	86416.Clopa_0337	623.0	0	Phage Terminase	N/A
Pfam	UHGV-0032760_14	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0032760_14	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0032760_14	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0032760_14	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0032760_15	phrog_5110	82.7	2.8e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0032760_15	UniRef90_A0A4U7JDP0	114.0	8.67e-31	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0032760_15	86416.Clopa_0336	100.0	4.21e-26	N/A	N/A
Pfam	UHGV-0032760_15	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0032760_15	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0032760_16	K07451	40.4	0.000000000053	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0032760_16	phrog_119	70.2	2.6e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032760_16	UniRef90_A0A412ULY9	224.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0032760_16	1158607.UAU_01026	101.0	2.34e-26	HNH endonuclease	N/A
Pfam	UHGV-0032760_16	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0032760_16	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0032760_17	K22300	40.4	0.000000000056	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0032760_17	phrog_8	50.8	0.000000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-0032760_17	UniRef90_A0A412ULX1	137.0	3.17997e-41	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0032760_17	226185.EF_1277	55.8	0.0000000101	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0032760_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0032760_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0032760_17	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032760_18	PF02796,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0032760_21	phrog_25754	65.7	4.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0032760_21	97139.C824_00736	74.3	0.0000000000000182	N/A	N/A
KOfam	UHGV-0032760_22	K22300	53.8	0.0000000000000044	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0032760_22	phrog_8	61.6	1.9e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0032760_22	UniRef90_A0A374N9T4	107.0	2.97e-29	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0032760_22	717605.Theco_0106	79.0	6.44e-18	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-0032760_22	retron_type_VI_hth_cluster2_1	40.3	0.000000000086	N/A	Retron
Pfam	UHGV-0032760_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0032760_22	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0032760_22	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0032760_23	phrog_10714	53.0	0.000000000000003	N/A	unknown function
PHROG	UHGV-0032760_24	phrog_10714	43.0	0.000000000005	N/A	unknown function
eggNOG-mapper	UHGV-0032760_24	742723.HMPREF9477_00922	54.7	0.0000000126	N/A	N/A
structural_annotation	UHGV-0032760_26	PF19824,MF_01506	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032760_28	PF02559,MF_00667,TIGR02861	N/A	N/A	N/A	N/A
PHROG	UHGV-0032760_29	phrog_140	92.2	6e-27	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032760_29	UniRef90_A0A2N0UXU6	263.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0032760_29	411462.DORLON_00806	204.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0032760_29	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0032760_29	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0032760_29	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0032760_30	K07505	403.4	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0032760_30	phrog_2597	1178.1	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032760_30	UniRef90_A0A2N0UXP7	1458.0	0	Regulatory protein RepA	N/A
eggNOG-mapper	UHGV-0032760_30	394503.Ccel_3304	966.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0032760_30	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0032760_30	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0032760_30	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0032760_30	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0032760_31	K17677	362.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0032760_31	phrog_16	297.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032760_31	UniRef90_A0A412ULZ3	1053.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0032760_31	1235798.C817_03499	843.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0032760_31	mREase_IV_00005	135.8	3.60001e-40	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0032760_31	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0032760_31	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0032760_31	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0032760_31	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0032760_32	phrog_2698	154.7	0	N/A	unknown function
UniRef90	UHGV-0032760_32	UniRef90_UPI001D0882DA	184.0	0	N/A	N/A
eggNOG-mapper	UHGV-0032760_32	742723.HMPREF9477_00927	129.0	5.16e-36	N/A	N/A
structural_annotation	UHGV-0032760_32	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0032760_33	phrog_124	264.3	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032760_33	UniRef90_A0A2N0UXR5	689.0	0	Phage nucleotide-binding protein	N/A
eggNOG-mapper	UHGV-0032760_33	1123304.AQYA01000037_gene196	437.0	0	AAA domain	N/A
Pfam	UHGV-0032760_33	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0032760_33	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0032760_35	K03546	58.2	7.4e-17	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0032760_35	phrog_1499	480.0	0	N/A	unknown function
UniRef90	UHGV-0032760_35	UniRef90_A0A2N0UXU2	751.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0032760_35	645991.Sgly_0320	503.0	0	domain protein	N/A
Pfam	UHGV-0032760_35	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0032760_35	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0032760_35	TIGR03185,COG5293	N/A	N/A	N/A	N/A
PHROG	UHGV-0032760_37	phrog_6058	42.3	0.000000000009	N/A	unknown function
eggNOG-mapper	UHGV-0032760_37	742738.HMPREF9460_00848	48.9	0.00000289	N/A	N/A
structural_annotation	UHGV-0032760_37	NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0032760_38	phrog_599	45.9	0.0000000000011	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0032760_38	UniRef90_UPI0015F48AC0	144.0	3.29305e-43	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0032760_38	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0032760_38	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0032760_38	PF14354,TIGR03655	N/A	N/A	N/A	N/A
KOfam	UHGV-0032760_40	K18830	55.9	0.0000000000000011	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0032760_40	phrog_2967	51.5	0.000000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-0032760_40	UniRef90_A0A355TWJ4	112.0	1.64e-29	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0032760_40	525254.HMPREF0072_0267	92.4	1.36e-22	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-0032760_40	retron_type_VI_hth_cluster2_1	41.5	0.000000000028	N/A	Retron
Pfam	UHGV-0032760_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0032760_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0032760_40	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032760_43	1232447.BAHW02000014_gene830	52.0	0.000000788	N/A	N/A
KOfam	UHGV-0032760_44	K14059	94.7	1.4e-27	int; integrase	N/A
PHROG	UHGV-0032760_44	phrog_1	124.2	1.3e-36	integrase	integration and excision
UniRef90	UHGV-0032760_44	UniRef90_A0A374MXE7	790.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0032760_44	693746.OBV_41260	181.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0032760_44	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0032760_44	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0032760_44	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0032760	Yes	31,408	41	76	1
UHGV-0022161	No	31,408	41	76	1