vOTU vOTU-152446

vOTU: vOTU-152446

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-152446
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Coprobacillaceae → Erysipelatoclostridium → Erysipelatoclostridium ramosum
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-01410 → vGENUS-01405 → vOTU-152446
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Coprobacillaceae → Erysipelatoclostridium → Erysipelatoclostridium ramosum
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0359363
Biosample ID	N/A
Genome length (bp)	40,208 bps
CheckV completeness	88.61% (Medium-quality)
CDS count	59
CDS density	91.76%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Coprobacillaceae → Erysipelatoclostridium → Erysipelatoclostridium ramosum	Total connections	140	Host agreement	99.29
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Coprobacillaceae → Erysipelatoclostridium → Erysipelatoclostridium ramosum	Total connections	62	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.61)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0359363_2	K21471	46.3	0.00000000000089	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
UniRef90	UHGV-0359363_2	UniRef90_A0A416DTG4	303.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0359363_2	411902.CLOBOL_04837	170.0	0	Phage lysozyme	N/A
Pfam	UHGV-0359363_2	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0359363_2	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
PHROG	UHGV-0359363_3	phrog_1863	84.1	8.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0359363_3	1232449.BAHV02000017_gene1511	69.7	0.00000000000000871	N/A	N/A
PHROG	UHGV-0359363_4	phrog_10091	121.0	6.5e-36	holin	lysis
UniRef90	UHGV-0359363_4	UniRef90_A0A7U9CEZ0	165.0	0	Phage phi LC3 family holin	N/A
eggNOG-mapper	UHGV-0359363_4	428127.EUBDOL_01206	127.0	1.67e-37	COG5546 Small integral membrane protein	N/A
Pfam	UHGV-0359363_4	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0359363_4	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0359363_4	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0359363_4	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0359363_5	PF12961,MF_00771,NF002617,COG3215	N/A	N/A	N/A	N/A
PHROG	UHGV-0359363_6	phrog_372	263.4	0	tail protein	tail
UniRef90	UHGV-0359363_6	UniRef90_A0A4S2AE74	176.0	6.72623e-44	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-0359363_6	445974.CLORAM_02918	623.0	0	N/A	N/A
Pfam	UHGV-0359363_6	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0359363_6	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0359363_6	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
KOfam	UHGV-0359363_7	K19721	99.8	5.2e-30	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0359363_7	phrog_819	856.3	0	tail protein	tail
UniRef90	UHGV-0359363_7	UniRef90_G9QXA6	1305.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0359363_7	445974.CLORAM_02919	1283.0	0	cellulase activity	N/A
Pfam	UHGV-0359363_7	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0359363_7	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-0359363_10	phrog_1194	106.5	1.6e-31	N/A	unknown function
UniRef90	UHGV-0359363_10	UniRef90_A0A4U9RD70	102.0	1.19e-25	Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-0359363_10	1211844.CBLM010000023_gene979	130.0	1.96e-37	N/A	N/A
Pfam	UHGV-0359363_10	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0359363_10	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0359363_11	phrog_1535	248.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0359363_11	UniRef90_A8RD17	255.0	0	Cation diffusion facilitator family transporter	N/A
eggNOG-mapper	UHGV-0359363_11	428127.EUBDOL_01563	255.0	0	homoserine transmembrane transporter activity	N/A
COG	UHGV-0359363_11	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
eggNOG-mapper	UHGV-0359363_12	1121333.JMLH01000047_gene1011	134.0	7.52e-39	N/A	N/A
UniRef90	UHGV-0359363_13	UniRef90_A0A3E3AED0	211.0	0	N/A	N/A
eggNOG-mapper	UHGV-0359363_13	1121333.JMLH01000047_gene1012	180.0	0	N/A	N/A
Pfam	UHGV-0359363_13	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0359363_13	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0359363_14	phrog_158	50.1	0.00000000000005	major tail protein	tail
eggNOG-mapper	UHGV-0359363_14	1121333.JMLH01000047_gene1013	245.0	0	N/A	N/A
structural_annotation	UHGV-0359363_14	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0359363_15	1121333.JMLH01000047_gene1014	66.6	0.00000000000396	N/A	N/A
structural_annotation	UHGV-0359363_15	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-0359363_16	UniRef90_UPI001BBD4500	103.0	5.85e-25	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0359363_16	397290.C810_01411	106.0	1.17e-26	N/A	N/A
structural_annotation	UHGV-0359363_16	PF17395,TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0359363_17	1121866.AUGK01000003_gene1432	50.1	0.00000557	N/A	N/A
UniRef90	UHGV-0359363_18	UniRef90_A0A374HKI7	75.5	0.00000000000000133	DNA-packaging protein	N/A
structural_annotation	UHGV-0359363_18	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0359363_19	phrog_544	69.9	1.4e-20	major head protein	head and packaging
eggNOG-mapper	UHGV-0359363_19	428127.EUBDOL_01555	325.0	0	N/A	N/A
structural_annotation	UHGV-0359363_19	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0359363_21	phrog_64	227.9	0	portal protein	head and packaging
UniRef90	UHGV-0359363_21	UniRef90_A0A3E3AE79	923.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0359363_21	1121866.AUGK01000003_gene1429	270.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0359363_21	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0359363_21	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0359363_22	phrog_38	170.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0359363_22	UniRef90_A0A318EQM2	466.0	0	Putative phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-0359363_22	1123263.AUKY01000015_gene1608	478.0	0	chromosome segregation	N/A
COG	UHGV-0359363_22	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0359363_22	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0359363_23	phrog_1233	71.7	1.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0359363_23	357809.Cphy_2967	67.8	0.000000000000273	N/A	N/A
structural_annotation	UHGV-0359363_23	PF13058	N/A	N/A	N/A	N/A
KOfam	UHGV-0359363_24	K14060	115.5	5.8e-34	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0359363_24	phrog_125	159.9	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0359363_24	UniRef90_A0A3E3AEZ4	358.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0359363_24	1410670.JHXF01000007_gene588	172.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0359363_24	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0359363_24	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0359363_24	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0359363_25	UniRef90_A0A3E3AET2	152.0	0	XRE family transcriptional regulator	N/A
Pfam	UHGV-0359363_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0359363_25	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0359363_25	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0359363_29	phrog_606	40.2	0.000000000024	terminase small subunit	head and packaging
UniRef90	UHGV-0359363_29	UniRef90_A0A318EMC2	103.0	5.13e-24	DNA-packaging protein gp3	N/A
eggNOG-mapper	UHGV-0359363_29	1235793.C809_00539	62.0	0.00000000342	N/A	N/A
Pfam	UHGV-0359363_29	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
KOfam	UHGV-0359363_30	K02316	101.9	8.2e-30	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0359363_30	phrog_864	270.3	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0359363_30	UniRef90_UPI001D08D333	589.0	0	phage/plasmid primase, P4 family	N/A
eggNOG-mapper	UHGV-0359363_30	469596.HMPREF9488_01547	283.0	0	D5 N terminal like	N/A
Pfam	UHGV-0359363_30	PF13155	N/A	N/A	Toprim-like	Toprim_2
Pfam	UHGV-0359363_30	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0359363_30	PF19263	N/A	N/A	N/A	DUF5906
NCBIFam	UHGV-0359363_30	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0359363_30	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0359363_30	PF04735,MF_00974,MF_04000,NF005477,COG3378,COG0358	N/A	N/A	N/A	N/A
PHROG	UHGV-0359363_31	phrog_173	112.6	3.5e-33	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0359363_31	UniRef90_A0A3E3AEA0	333.0	0	dUTPase	N/A
eggNOG-mapper	UHGV-0359363_31	1352230.S6AVW3_9CAUD	100.0	9.49e-25	dCTP diphosphatase activity	N/A
Pfam	UHGV-0359363_31	PF08761	N/A	N/A	dUTPase	dUTPase_2
structural_annotation	UHGV-0359363_31	PF08761,COG4508	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0359363_36	cluster_200940	132.0	1.30321e-43	NA	N/A
PHROG	UHGV-0359363_37	phrog_22292	57.0	3.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0359363_37	1232446.BAIE02000041_gene2433	170.0	0	N/A	N/A
PHROG	UHGV-0359363_38	phrog_5702	58.1	8.6e-17	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0359363_38	UniRef90_A0A3E3AEG4	219.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0359363_38	97138.C820_00219	49.3	0.00000425	VRR-NUC domain-containing protein	N/A
PHROG	UHGV-0359363_43	phrog_154	49.8	0.000000000000055	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0359363_43	UniRef90_A0A3E3AEB7	175.0	0	N/A	N/A
Pfam	UHGV-0359363_43	PF17399	N/A	N/A	N/A	DUF5405
KOfam	UHGV-0359363_47	K19789	251.7	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-0359363_47	phrog_16	206.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0359363_47	UniRef90_A0A6N8HZM3	312.0	0	Putative DNA repair helicase RadD	N/A
eggNOG-mapper	UHGV-0359363_47	1231377.C426_0598	307.0	0	helicase	N/A
PADLOC	UHGV-0359363_47	mREase_IV_00005	60.4	2.2e-17	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0359363_47	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0359363_47	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0359363_47	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0359363_47	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0359363_48	phrog_18107	79.1	4e-23	N/A	unknown function
UniRef90	UHGV-0359363_48	UniRef90_A0A412CGY7	102.0	5.04e-24	N/A	N/A
eggNOG-mapper	UHGV-0359363_48	903814.ELI_1274	157.0	0	N/A	N/A
structural_annotation	UHGV-0359363_48	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0359363_49	phrog_253	76.0	5.8e-22	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0359363_49	UniRef90_UPI00069126B1	152.0	4.34403e-44	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0359363_49	1504823.CCMM01000008_gene1065	152.0	7.00649e-45	Siphovirus Gp157	N/A
Pfam	UHGV-0359363_49	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0359363_49	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0359363_50	phrog_2872	213.3	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0359363_50	UniRef90_A0A3E3AEA8	412.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0359363_50	1415774.U728_1119	242.0	0	AAA domain	N/A
Pfam	UHGV-0359363_50	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0359363_50	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0359363_51	PF04325,TIGR04116,COG5570	N/A	N/A	N/A	N/A
PHROG	UHGV-0359363_56	phrog_463	160.9	0	anti-repressor	transcription regulation
UniRef90	UHGV-0359363_56	UniRef90_UPI001C386D80	448.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0359363_56	1195068.M9NS96_9CAUD	142.0	4.53e-39	DNA binding	N/A
Pfam	UHGV-0359363_56	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0359363_56	PF10552	N/A	N/A	ORF6C domain	ORF6C
structural_annotation	UHGV-0359363_56	PF02498,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0359363_57	phrog_3	40.3	0.00000000013	transcriptional repressor	transcription regulation
UniRef90	UHGV-0359363_57	UniRef90_UPI001C389885	134.0	6.10001e-40	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0359363_57	1410612.JNKO01000002_gene2326	48.9	0.00000242	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0359363_57	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0359363_57	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0359363_57	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0359363_58	K01356	138.0	1.10001e-40	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0359363_58	phrog_4	122.3	4.8e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-0359363_58	UniRef90_UPI001C38194E	454.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0359363_58	552396.HMPREF0863_02447	158.0	1.4013e-45	Represses a number of genes involved in the response to DNA damage (SOS response)	N/A
Pfam	UHGV-0359363_58	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-0359363_58	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0359363_58	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0359363_58	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
PHROG	UHGV-0359363_59	phrog_3845	74.8	1.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0359363_59	552396.HMPREF0863_04117	106.0	1.05e-23	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0359363	Yes	40,208	33	89	1