vOTU vOTU-152755

vOTU: vOTU-152755

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-152755
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00011 → vSUBFAM-05595 → vOTU-152755
Host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella → Gemella haemolysans_A
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1378538
Biosample ID	N/A
Genome length (bp)	23,354 bps
CheckV completeness	61.19% (Medium-quality)
CDS count	31
CDS density	96.34%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella → Gemella haemolysans_A	Total connections	2	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 61.19)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1378538_1	phrog_33	49.9	0.000000000000069	distal tail protein Dit	tail
UniRef90	UHGV-1378538_1	UniRef90_A0A2X4NBW4	432.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1378538_1	562981.HMPREF0428_00971	395.0	0	phage tail	N/A
COG	UHGV-1378538_1	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1378538_1	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1378538_2	phrog_1204	540.9	0	tail protein	tail
UniRef90	UHGV-1378538_2	UniRef90_A0A2X4R133	1127.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1378538_2	562981.HMPREF0428_00972	746.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-1378538_2	PF20155	N/A	N/A	Tape measure protein	TMP_3
Pfam	UHGV-1378538_2	PF04513	N/A	N/A	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
NCBIFam	UHGV-1378538_2	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1378538_2	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1378538_3	phrog_706	211.8	0	N/A	unknown function
UniRef90	UHGV-1378538_3	UniRef90_A0A2X4RDY7	382.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1378538_3	562981.HMPREF0428_00973	260.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1378538_3	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1378538_3	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1378538_4	phrog_1061	62.8	6.4e-18	N/A	unknown function
UniRef90	UHGV-1378538_4	UniRef90_A0A139RN56	88.6	2.55e-20	N/A	N/A
eggNOG-mapper	UHGV-1378538_4	562981.HMPREF0428_00974	134.0	6.04e-39	N/A	N/A
structural_annotation	UHGV-1378538_4	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1378538_5	phrog_820	164.3	0	major tail protein	tail
UniRef90	UHGV-1378538_5	UniRef90_A0A0X8KMB0	251.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1378538_5	562981.HMPREF0428_00975	233.0	0	N/A	N/A
structural_annotation	UHGV-1378538_5	PF08813,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1378538_6	phrog_913	147.7	3.08286e-44	minor head protein	head and packaging
UniRef90	UHGV-1378538_6	UniRef90_A0A2X4NB85	242.0	0	Minor capsid protein from bacteriophage	N/A
eggNOG-mapper	UHGV-1378538_6	562981.HMPREF0428_00976	216.0	0	Minor capsid protein from bacteriophage	N/A
Pfam	UHGV-1378538_6	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1378538_6	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1378538_7	phrog_556	72.9	4e-21	minor head protein	head and packaging
UniRef90	UHGV-1378538_7	UniRef90_A0A2X4NG99	221.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1378538_7	1246.JMEA01000006_gene45	113.0	5.75e-31	Minor capsid protein	N/A
Pfam	UHGV-1378538_7	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1378538_7	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1378538_8	phrog_793	91.8	5.1e-27	head-tail adaptor	connector
UniRef90	UHGV-1378538_8	UniRef90_A0A2X4N3V8	201.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1378538_8	562981.HMPREF0428_00978	170.0	0	Minor capsid protein	N/A
Pfam	UHGV-1378538_8	PF10665	N/A	N/A	Minor capsid protein	Minor_capsid_1
structural_annotation	UHGV-1378538_8	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1378538_9	phrog_541	106.4	1.7e-31	head-tail adaptor	connector
UniRef90	UHGV-1378538_9	UniRef90_A0A380K6A1	137.0	2.86e-39	N/A	N/A
eggNOG-mapper	UHGV-1378538_9	562981.HMPREF0428_00979	201.0	0	N/A	N/A
PHROG	UHGV-1378538_11	phrog_840	430.1	0	major head protein	head and packaging
UniRef90	UHGV-1378538_11	UniRef90_A0A6H1F174	412.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1378538_11	562981.HMPREF0428_00981	412.0	0	N/A	N/A
structural_annotation	UHGV-1378538_11	PF03864,MF_04119,TIGR04387,COG1659	N/A	N/A	N/A	N/A
PHROG	UHGV-1378538_12	phrog_194	135.6	3.8e-40	head scaffolding protein	head and packaging
UniRef90	UHGV-1378538_12	UniRef90_A0A2X4R123	328.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1378538_12	646413.C5IUJ4_9CAUD	179.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-1378538_12	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1378538_12	PF06810	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1378538_13	562982.HMPREF0432_00874	100.0	9.59e-28	N/A	N/A
PHROG	UHGV-1378538_14	phrog_581	283.6	0	minor head protein	head and packaging
UniRef90	UHGV-1378538_14	UniRef90_A0A2X4N6F7	1085.0	0	NAD(+)--arginine ADP-ribosyltransferase EFV	N/A
eggNOG-mapper	UHGV-1378538_14	562981.HMPREF0428_00983	603.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1378538_14	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1378538_14	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
structural_annotation	UHGV-1378538_14	PF06152,PF03496,NF040688	N/A	N/A	N/A	N/A
PHROG	UHGV-1378538_15	phrog_533	583.8	0	portal protein	head and packaging
UniRef90	UHGV-1378538_15	UniRef90_A0A2X4N9Z3	920.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1378538_15	562981.HMPREF0428_00984	865.0	0	portal protein	N/A
Pfam	UHGV-1378538_15	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1378538_15	TIGR01542.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1378538_15	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1378538_16	K06909	266.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1378538_16	phrog_3717	158.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1378538_16	UniRef90_A0A2X4NB78	845.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1378538_16	562981.HMPREF0428_00985	803.0	0	Terminase RNAseH like domain	N/A
Pfam	UHGV-1378538_16	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1378538_16	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1378538_16	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1378538_16	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1378538_16	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1378538_17	K07474	104.1	2.6e-30	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1378538_17	phrog_51	118.7	4.8e-35	terminase small subunit	head and packaging
UniRef90	UHGV-1378538_17	UniRef90_A0A2X4NG90	221.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1378538_17	562981.HMPREF0428_01825	184.0	0	Terminase small subunit	N/A
Pfam	UHGV-1378538_17	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1378538_17	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1378538_17	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1378538_18	phrog_36	54.7	0.0000000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-1378538_18	UniRef90_A0A6H1F453	125.0	4.79e-34	N/A	N/A
Pfam	UHGV-1378538_18	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1378538_18	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1378538_18	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1378538_19	NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-1378538_21	phrog_12650	70.6	1e-20	N/A	unknown function
structural_annotation	UHGV-1378538_21	NF010673	N/A	N/A	N/A	N/A
KOfam	UHGV-1378538_23	K00558	296.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1378538_23	phrog_116	317.0	0	DNA methyltransferase	other
UniRef90	UHGV-1378538_23	UniRef90_A0A6H1F1K0	573.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1378538_23	562981.HMPREF0428_01833	573.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1378538_23	MTase_II_00058	337.9	0	Type II methyltransferase	RM
Pfam	UHGV-1378538_23	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1378538_23	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1378538_23	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1378538_23	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1378538_24	K07319	107.4	1.3e-31	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1378538_24	phrog_23224	205.7	0	DNA methyltransferase	other
UniRef90	UHGV-1378538_24	UniRef90_UPI001B83764F	351.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1378538_24	1214217.ALNF01000014_gene1390	347.0	0	N-4 methylation of cytosine	N/A
PADLOC	UHGV-1378538_24	MTase_II_00172	93.7	4.8e-29	Type II methyltransferase	RM
Pfam	UHGV-1378538_24	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1378538_24	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1378538_24	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1378538_27	phrog_140	65.8	8.7e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1378538_27	UniRef90_I2NHS8	133.0	1.85e-37	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1378538_27	936580.HMPREF1516_0732	122.0	6.54e-34	crossover junction endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1378538_27	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1378538_27	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1378538_27	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1378538_28	K07505	423.5	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1378538_28	phrog_2597	1184.8	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1378538_28	UniRef90_I2NHT6	1015.0	0	Primase C-terminal 2 domain protein	N/A
eggNOG-mapper	UHGV-1378538_28	1000588.HMPREF9965_1716	1001.0	0	AAA domain	N/A
Pfam	UHGV-1378538_28	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1378538_28	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1378538_28	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1378538_28	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-1378538_29	K17677	366.7	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1378538_29	phrog_16	289.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1378538_29	UniRef90_A0A097BY72	776.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1378538_29	1486428.A0A097BY72_9CAUD	776.0	0	helicase activity	N/A
PADLOC	UHGV-1378538_29	mREase_IV_00005	135.4	4.79999e-40	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1378538_29	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1378538_29	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
structural_annotation	UHGV-1378538_29	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1378538_30	phrog_2698	188.4	0	N/A	unknown function
UniRef90	UHGV-1378538_30	UniRef90_A0A4V0ECJ9	204.0	0	N/A	N/A
eggNOG-mapper	UHGV-1378538_30	936580.HMPREF1516_0737	203.0	0	N/A	N/A
structural_annotation	UHGV-1378538_30	PF17426,NF005674	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1378538_31	1140001.I571_01813	62.8	0.000000000278	AAA domain	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1378538	Yes	23,354	34	61	1