vOTU vOTU-153131

vOTU: vOTU-153131

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-153131
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-03923 → vGENUS-06202 → vOTU-153131
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium_P → Clostridium_P ventriculi
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0019233
Biosample ID	SAMEA4766054
Genome length (bp)	22,082 bps
CheckV completeness	57.53% (Medium-quality)
CDS count	24
CDS density	90.47%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium_P → Clostridium_P ventriculi	Total connections	34	Host agreement	97.06
PHIST-predicted host lineage	Bacteria → Firmicutes	Total connections	7	Host agreement	57.14

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 57.53)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0019233_2	K01447	101.8	9.7e-30	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0019233_2	phrog_3088	134.8	6.3e-40	amidase	lysis
UniRef90	UHGV-0019233_2	UniRef90_UPI0009EA7BE7	595.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0019233_2	641107.CDLVIII_1361	218.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0019233_2	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0019233_2	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0019233_2	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0019233_3	phrog_199	49.3	0.000000000000055	holin	lysis
UniRef90	UHGV-0019233_3	UniRef90_UPI00073F5B1F	205.0	0	phage holin family protein	N/A
Pfam	UHGV-0019233_3	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0019233_3	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0019233_3	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0019233_3	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0019233_5	K07496	434.3	0	K07496; putative transposase	N/A
PHROG	UHGV-0019233_5	phrog_506	439.2	0	transposase	integration and excision
UniRef90	UHGV-0019233_5	UniRef90_R6GJQ9	642.0	0	Transposase-like protein b	N/A
eggNOG-mapper	UHGV-0019233_5	272563.CD630_16610	606.0	0	Helix-turn-helix domain	N/A
PADLOC	UHGV-0019233_5	Type_V_V_U4	207.4	0	Cas12	CRISPR-CAS
Pfam	UHGV-0019233_5	PF12323	N/A	N/A	Helix-turn-helix domain	HTH_OrfB_IS605
Pfam	UHGV-0019233_5	PF01385	N/A	N/A	Probable transposase	OrfB_IS605
Pfam	UHGV-0019233_5	PF07282	N/A	N/A	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
NCBIFam	UHGV-0019233_5	NF038281.1	N/A	N/A	IS200/IS605 family element RNA-guided endonuclease TnpB	N/A
COG	UHGV-0019233_5	COG0675	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-0019233_5	PF07282,PF01385,NF038281,COG0675	N/A	N/A	N/A	N/A
KOfam	UHGV-0019233_6	K07491	85.9	9.5e-25	rayT; REP-associated tyrosine transposase	N/A
PHROG	UHGV-0019233_6	phrog_2577	143.9	5.80138e-43	transposase	integration and excision
UniRef90	UHGV-0019233_6	UniRef90_A0A8B5KR28	237.0	0	IS200/IS605 family transposase	N/A
eggNOG-mapper	UHGV-0019233_6	1410628.JNKS01000002_gene2963	229.0	0	Transposase IS200 like	N/A
Pfam	UHGV-0019233_6	PF01797	N/A	N/A	Transposase IS200 like	Y1_Tnp
NCBIFam	UHGV-0019233_6	NF033573.1	N/A	N/A	IS200/IS605 family transposase	N/A
COG	UHGV-0019233_6	COG1943	N/A	N/A	REP element-mobilizing transposase RayT	N/A
structural_annotation	UHGV-0019233_6	PF01797,MF_00360,NF033573,COG1943	N/A	N/A	N/A	N/A
PHROG	UHGV-0019233_7	phrog_1067	410.8	0	minor head protein	head and packaging
UniRef90	UHGV-0019233_7	UniRef90_UPI001C1127BE	421.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0019233_7	1408823.AXUS01000025_gene2634	373.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0019233_7	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0019233_7	PF02018	N/A	N/A	Carbohydrate binding domain	CBM_4_9
NCBIFam	UHGV-0019233_7	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0019233_7	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0019233_7	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0019233_8	phrog_33	84.3	2.5e-24	distal tail protein Dit	tail
UniRef90	UHGV-0019233_8	UniRef90_UPI00073F69EF	456.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0019233_8	1567011.A0A0A7RWN1_9VIRU	181.0	0	Phage tail protein	N/A
Pfam	UHGV-0019233_8	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0019233_8	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
structural_annotation	UHGV-0019233_8	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0019233_9	K20283	51.5	0.0000000000000029	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0019233_9	phrog_1533	801.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0019233_9	UniRef90_UPI00073F8692	1171.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0019233_9	946235.CAER01000065_gene2435	343.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0019233_9	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0019233_9	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0019233_9	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0019233_9	PF10145,PF16789,TIGR01760,TIGR02473,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0019233_10	phrog_16952	118.2	4e-35	RNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0019233_10	UniRef90_A0A7Y0EL47	98.2	1.6e-24	RNA polymerase subunit sigma	N/A
eggNOG-mapper	UHGV-0019233_10	1443122.Z958_06020	88.6	1.53e-21	N/A	N/A
PHROG	UHGV-0019233_11	phrog_88	149.4	1.82169e-44	major tail protein	tail
UniRef90	UHGV-0019233_11	UniRef90_UPI00073EFF5D	372.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0019233_11	1033737.CAEV01000029_gene288	195.0	0	N/A	N/A
NCBIFam	UHGV-0019233_11	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0019233_11	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0019233_12	phrog_78	58.6	1.2e-16	tail terminator	connector
UniRef90	UHGV-0019233_12	UniRef90_UPI000AA7C45F	157.0	0	prohead protease	N/A
eggNOG-mapper	UHGV-0019233_12	1033737.CAEV01000029_gene289	68.2	0.0000000000000844	N/A	N/A
PHROG	UHGV-0019233_13	phrog_5	49.2	0.00000000000014	tail completion or Neck1 protein	connector
UniRef90	UHGV-0019233_13	UniRef90_UPI000BE3165C	114.0	1.69e-30	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0019233_13	1033737.CAEV01000029_gene290	114.0	4.39e-31	N/A	N/A
Pfam	UHGV-0019233_13	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0019233_13	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0019233_13	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0019233_14	phrog_25	52.5	0.000000000000008	head closure Hc1	connector
UniRef90	UHGV-0019233_14	UniRef90_UPI00073F417F	218.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0019233_14	1567011.A0A0A7RUH8_9VIRU	115.0	4.88e-32	Phage head-tail joining protein	N/A
Pfam	UHGV-0019233_14	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0019233_14	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0019233_14	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019233_15	1196322.A370_05715	55.1	0.00000000781	N/A	N/A
PHROG	UHGV-0019233_16	phrog_10	153.6	1.4013e-45	major head protein	head and packaging
UniRef90	UHGV-0019233_16	UniRef90_UPI00073F8CF6	762.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0019233_16	642492.Clole_1858	444.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0019233_16	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0019233_16	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0019233_16	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0019233_16	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0019233_17	K06904	118.3	9.2e-35	N/A	N/A
PHROG	UHGV-0019233_17	phrog_80	137.0	1.8e-40	head maturation protease	head and packaging
UniRef90	UHGV-0019233_17	UniRef90_UPI000B2C64A2	423.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0019233_17	1123288.SOV_2c03620	266.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0019233_17	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0019233_17	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0019233_17	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0019233_17	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0019233_18	phrog_12	158.2	0	portal protein	head and packaging
UniRef90	UHGV-0019233_18	UniRef90_UPI00073F2563	806.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0019233_18	1211817.CCAT010000007_gene1039	496.0	0	Portal protein	N/A
Pfam	UHGV-0019233_18	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0019233_18	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0019233_18	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0019233_19	phrog_9	305.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0019233_19	UniRef90_UPI00073E9160	1094.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0019233_19	1211817.CCAT010000007_gene1040	917.0	0	Terminase	N/A
Pfam	UHGV-0019233_19	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0019233_19	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0019233_19	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0019233_19	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0019233_20	phrog_1066	65.4	8.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0019233_20	642492.Clole_1854	136.0	6.04999e-40	N/A	N/A
structural_annotation	UHGV-0019233_20	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0019233_21	phrog_4581	104.0	1.4e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0019233_21	UniRef90_UPI00073EFE21	470.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0019233_21	1211817.CCAT010000007_gene1042	296.0	0	HNH endonuclease	N/A
Pfam	UHGV-0019233_21	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0019233_21	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0019233_21	PF13671,MF_03171,NF005251,NF008448,COG4639	N/A	N/A	N/A	N/A
PHROG	UHGV-0019233_22	phrog_309	96.6	2.3e-28	terminase small subunit	head and packaging
UniRef90	UHGV-0019233_22	UniRef90_UPI000BBCCA26	191.0	0	Xaa-His dipeptidase	N/A
eggNOG-mapper	UHGV-0019233_22	86416.Clopa_0334	209.0	0	transposase activity	N/A
COG	UHGV-0019233_22	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0019233_22	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0019233_23	K04763	100.6	2e-29	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0019233_23	phrog_216	162.2	0	integrase	integration and excision
UniRef90	UHGV-0019233_23	UniRef90_UPI00073F81CE	367.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0019233_23	97138.C820_00621	207.0	0	integrase family	N/A
Pfam	UHGV-0019233_23	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0019233_23	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0019233_23	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0019233_24	phrog_3928	49.2	0.00000000000007	N/A	unknown function
eggNOG-mapper	UHGV-0019233_24	1211817.CCAT010000003_gene247	47.0	0.00000218	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0019233	Yes	22,082	29	58	1