vOTU vOTU-153644

vOTU: vOTU-153644

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-153644
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-01620 → vGENUS-01686 → vOTU-153644
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0482137
Biosample ID	N/A
Genome length (bp)	45,266 bps
CheckV completeness	79.89% (Medium-quality)
CDS count	72
CDS density	86.20%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	Total connections	38	Host agreement	97.37
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 79.89)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0482137_1	UniRef90_A0A8D9PDM8	58.9	0.000000000504	Pyocin activator protein	N/A
PHROG	UHGV-0482137_3	phrog_478	119.3	1.6e-35	site-specific recombination directionality factor RDF	integration and excision
eggNOG-mapper	UHGV-0482137_3	665956.HMPREF1032_03082	193.0	0	N/A	N/A
PHROG	UHGV-0482137_10	phrog_3377	104.9	7.2e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0482137_10	UniRef90_J9PLD0	93.2	3.79e-21	Deoxyuridine 5'-triphosphate nucleotidohydrolase family protein	N/A
eggNOG-mapper	UHGV-0482137_10	411462.DORLON_00791	95.1	4.89e-22	N/A	N/A
KOfam	UHGV-0482137_11	K18830	56.6	5.3e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0482137_11	phrog_8	49.3	0.000000000000078	transcriptional regulator	transcription regulation
UniRef90	UHGV-0482137_11	UniRef90_UPI00195DE29C	244.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0482137_11	411471.SUBVAR_05818	110.0	1.11e-29	sequence-specific DNA binding	N/A
Pfam	UHGV-0482137_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0482137_11	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0482137_11	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0482137_13	K14059	149.4	3.64338e-44	int; integrase	N/A
PHROG	UHGV-0482137_13	phrog_1	159.4	0	integrase	integration and excision
UniRef90	UHGV-0482137_13	UniRef90_A0A1C5W824	531.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0482137_13	693746.OBV_41260	286.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0482137_13	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0482137_13	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0482137_13	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0482137_14	1378168.N510_03079	144.0	1.1e-39	N/A	N/A
eggNOG-mapper	UHGV-0482137_15	1408437.JNJN01000043_gene802	186.0	0	N/A	N/A
PHROG	UHGV-0482137_16	phrog_16490	274.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0482137_16	445972.ANACOL_01880	280.0	0	N/A	N/A
eggNOG-mapper	UHGV-0482137_17	476272.RUMHYD_01953	52.4	0.0000000748	N/A	N/A
PHROG	UHGV-0482137_18	phrog_21718	40.2	0.000000000048	N/A	unknown function
eggNOG-mapper	UHGV-0482137_18	1408437.JNJN01000043_gene805	59.3	0.0000000019	N/A	N/A
structural_annotation	UHGV-0482137_20	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0482137_21	K01448	145.7	3.60134e-43	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0482137_21	phrog_435	152.8	2.8026e-45	endolysin	lysis
UniRef90	UHGV-0482137_21	UniRef90_R8W911	275.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0482137_21	1203606.HMPREF1526_00962	278.0	0	Ami_3	N/A
Pfam	UHGV-0482137_21	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0482137_21	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0482137_21	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0482137_22	phrog_297	46.0	0.00000000000075	holin	lysis
UniRef90	UHGV-0482137_22	UniRef90_A0A417HAK5	129.0	3.49e-37	Phage holin	N/A
eggNOG-mapper	UHGV-0482137_22	1408437.JNJN01000039_gene392	99.4	2.39e-26	COG COG5546 Small integral membrane protein	N/A
Pfam	UHGV-0482137_22	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0482137_22	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0482137_22	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0482137_22	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0482137_23	phrog_23092	80.7	1.7e-23	N/A	unknown function
eggNOG-mapper	UHGV-0482137_23	1226322.HMPREF1545_00131	79.7	9.92e-18	N/A	N/A
PHROG	UHGV-0482137_24	phrog_1009	41.9	0.000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0482137_25	1121947.AUHK01000002_gene947	54.7	0.000000638	N/A	N/A
structural_annotation	UHGV-0482137_27	PF09826,MF_03001,TIGR04528,COG2706	N/A	N/A	N/A	N/A
UniRef90	UHGV-0482137_28	UniRef90_A0A096B066	101.0	2.58e-20	Mtd_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0482137_29	1226322.HMPREF1545_00062	62.0	0.0000000138	N/A	N/A
structural_annotation	UHGV-0482137_29	PF00354	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0482137_31	PF07703,NF038114,COG5501	N/A	N/A	N/A	N/A
PHROG	UHGV-0482137_32	phrog_32322	48.7	0.0000000000001	N/A	unknown function
UniRef90	UHGV-0482137_32	UniRef90_A0A1Y3SHI6	84.0	1.87e-18	Ig-like_bact domain-containing protein	N/A
eggNOG-mapper	UHGV-0482137_32	1232446.BAIE02000011_gene1581	52.8	0.000000247	N/A	N/A
Pfam	UHGV-0482137_32	PF13754	N/A	N/A	N/A	Big_3_4
structural_annotation	UHGV-0482137_32	PF13754	N/A	N/A	N/A	N/A
KOfam	UHGV-0482137_33	K13276	74.0	1e-21	bpr; bacillopeptidase F [EC:3.4.21.-]	N/A
PHROG	UHGV-0482137_33	phrog_11157	232.8	0	N/A	unknown function
UniRef90	UHGV-0482137_33	UniRef90_A0A1M5CXW0	304.0	0	Big_13 domain-containing protein	N/A
eggNOG-mapper	UHGV-0482137_33	742765.HMPREF9457_03368	291.0	0	N/A	N/A
Pfam	UHGV-0482137_33	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-0482137_33	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
COG	UHGV-0482137_33	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-0482137_33	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0482137_34	phrog_13879	242.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0482137_34	645991.Sgly_0356	153.0	1.22e-37	N/A	N/A
structural_annotation	UHGV-0482137_34	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0482137_35	phrog_1194	83.0	2.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-0482137_35	1449343.JQLQ01000002_gene1510	55.8	0.0000000262	N/A	N/A
Pfam	UHGV-0482137_35	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0482137_35	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0482137_36	phrog_1533	174.7	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0482137_36	1121866.AUGK01000003_gene1437	213.0	0	phage tail tape measure protein	N/A
COG	UHGV-0482137_36	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0482137_39	phrog_373	98.4	8.6e-29	anti-repressor	transcription regulation
UniRef90	UHGV-0482137_39	UniRef90_UPI00189AB719	276.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0482137_39	1196028.ALEF01000043_gene494	138.0	2.93e-38	ORF6C domain	N/A
Pfam	UHGV-0482137_39	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0482137_39	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0482137_39	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0482137_39	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-0482137_42	UniRef90_A0A3P3UAK8	57.4	0.00000000102	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0482137_42	445971.ANASTE_00663	56.6	0.000000000338	Ribbon-helix-helix protein, copG family	N/A
structural_annotation	UHGV-0482137_42	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-0482137_44	UniRef90_UPI0002DB73A7	283.0	0	N/A	N/A
eggNOG-mapper	UHGV-0482137_44	986075.CathTA2_1209	209.0	0	serine threonine protein kinase	N/A
AcrCatalog	UHGV-0482137_44	cluster_71895	222.0	0	NA	N/A
COG	UHGV-0482137_44	COG0515	N/A	N/A	Serine/threonine protein kinase	N/A
structural_annotation	UHGV-0482137_44	PF11611,PF03843,MF_00791,MF_01959,TIGR03943,NF003465,COG3065,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-0482137_45	phrog_130	169.1	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0482137_45	UniRef90_A0A1V0QCE9	330.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0482137_45	1304866.K413DRAFT_4750	184.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0482137_45	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0482137_45	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0482137_45	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0482137_46	1121333.JMLH01000047_gene1011	71.6	0.0000000000000144	N/A	N/A
UniRef90	UHGV-0482137_47	UniRef90_A0A845R9E6	120.0	8.06e-33	N/A	N/A
Pfam	UHGV-0482137_47	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0482137_47	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0482137_48	phrog_158	44.6	0.0000000000027	major tail protein	tail
eggNOG-mapper	UHGV-0482137_48	469596.HMPREF9488_01310	200.0	0	N/A	N/A
structural_annotation	UHGV-0482137_48	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0482137_49	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0482137_50	phrog_5	46.7	0.00000000000074	tail completion or Neck1 protein	connector
UniRef90	UHGV-0482137_50	UniRef90_UPI001BBD4500	126.0	4.42e-34	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0482137_50	397290.C810_01411	94.0	5.91e-22	N/A	N/A
structural_annotation	UHGV-0482137_50	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0482137_51	1121866.AUGK01000003_gene1432	67.4	0.00000000000303	N/A	N/A
structural_annotation	UHGV-0482137_51	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0482137_52	UniRef90_A0A845R6M6	115.0	1.74e-31	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0482137_52	1298920.KI911353_gene2658	54.3	0.0000000407	N/A	N/A
Pfam	UHGV-0482137_52	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0482137_52	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0482137_54	1226322.HMPREF1545_00051	148.0	4.2039e-45	N/A	N/A
PHROG	UHGV-0482137_55	phrog_29	203.7	0	major head protein	head and packaging
UniRef90	UHGV-0482137_55	UniRef90_A0A7X5DZ98	558.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0482137_55	1347368.HG964404_gene4993	291.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0482137_55	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0482137_55	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0482137_56	phrog_909	53.3	0.0000000000000043	major head protein	head and packaging
PHROG	UHGV-0482137_59	phrog_115	43.5	0.0000000000044	minor head protein	head and packaging
UniRef90	UHGV-0482137_59	UniRef90_A0A1C5WCC8	392.0	0	Phage head morphogenesis protein, SPP1 gp7 family	N/A
structural_annotation	UHGV-0482137_59	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0482137_60	phrog_374	207.6	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0482137_60	500635.MITSMUL_03105	175.0	0	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	N/A
COG	UHGV-0482137_60	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0482137_60	PF18337	N/A	N/A	N/A	N/A
PHROG	UHGV-0482137_61	phrog_64	199.7	0	portal protein	head and packaging
UniRef90	UHGV-0482137_61	UniRef90_A0A845RCM8	548.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0482137_61	1123263.AUKY01000015_gene1609	371.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0482137_61	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0482137_61	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0482137_62	phrog_38	162.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0482137_62	UniRef90_UPI00164E3A67	586.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0482137_62	476272.RUMHYD_01940	313.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0482137_62	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0482137_62	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0482137_62	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
KOfam	UHGV-0482137_64	K19157	131.7	4.8e-39	yafQ; mRNA interferase YafQ [EC:3.1.-.-]	N/A
PHROG	UHGV-0482137_64	phrog_7251	122.2	1.4e-36	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0482137_64	UniRef90_R9ME46	157.0	0	RelE/StbE family addiction module toxin	N/A
eggNOG-mapper	UHGV-0482137_64	476272.RUMHYD_01668	179.0	0	Bacterial toxin of type II toxin-antitoxin system, YafQ	N/A
Pfam	UHGV-0482137_64	PF15738	N/A	N/A	Bacterial toxin of type II toxin-antitoxin system, YafQ	YafQ_toxin
NCBIFam	UHGV-0482137_64	TIGR02385.1	N/A	N/A	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	N/A
COG	UHGV-0482137_64	COG3041	N/A	N/A	mRNA-degrading endonuclease YafQ (mRNA interferase), toxin component of the YafQ-DinJ toxin-antitoxin module	N/A
structural_annotation	UHGV-0482137_64	PF15738,TIGR00053,COG3041	N/A	N/A	N/A	N/A
KOfam	UHGV-0482137_65	K07473	93.5	3e-27	dinJ; DNA-damage-inducible protein J	N/A
PHROG	UHGV-0482137_65	phrog_2737	72.5	3.4e-21	N/A	unknown function
UniRef90	UHGV-0482137_65	UniRef90_UPI001EE352FA	125.0	1.04e-35	type II toxin-antitoxin system RelB/DinJ family antitoxin	N/A
eggNOG-mapper	UHGV-0482137_65	476272.RUMHYD_01669	116.0	6.06e-33	RelB antitoxin	N/A
Pfam	UHGV-0482137_65	PF04221	N/A	N/A	RelB antitoxin	RelB
NCBIFam	UHGV-0482137_65	TIGR02384.1	N/A	N/A	type II toxin-antitoxin system RelB/DinJ family antitoxin	N/A
COG	UHGV-0482137_65	COG3077	N/A	N/A	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	N/A
structural_annotation	UHGV-0482137_65	PF04221,TIGR02384,COG3077	N/A	N/A	N/A	N/A
PHROG	UHGV-0482137_66	phrog_374	55.9	5.8e-37	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0482137_66	UniRef90_A0A328KEI3	85.1	7.98e-17	AP2/ERF domain-containing protein	N/A
eggNOG-mapper	UHGV-0482137_66	478749.BRYFOR_06584	79.7	0.00000000000000854	AP2 domain protein	N/A
structural_annotation	UHGV-0482137_66	PF17375	N/A	N/A	N/A	N/A
KOfam	UHGV-0482137_67	K14060	131.0	1.1e-38	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0482137_67	phrog_125	161.9	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0482137_67	UniRef90_A0A3C0RMG9	235.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-0482137_67	742738.HMPREF9460_01133	234.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0482137_67	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0482137_67	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0482137_67	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0482137_68	UniRef90_UPI001C02D1DF	51.2	0.000000924	winged helix-turn-helix transcriptional regulator	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0482137	Yes	45,266	46	80	1