vOTU vOTU-153652

vOTU: vOTU-153652

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-153652
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900539375
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-02917 → vGENUS-13262 → vOTU-153652
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900539375
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0008436
Biosample ID	SAMN20031478
Genome length (bp)	23,981 bps
CheckV completeness	58.97% (Medium-quality)
CDS count	33
CDS density	92.54%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900539375	Total connections	2	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900539375	Total connections	12	Host agreement	91.67

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 58.97)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0008436_1	K07273	220.8	0	acm; lysozyme	N/A
PHROG	UHGV-0008436_1	phrog_6219	254.2	0	endolysin	lysis
UniRef90	UHGV-0008436_1	UniRef90_UPI001EEDF77A	310.0	0	peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0008436_1	1294142.CINTURNW_1048	301.0	0	family 25	N/A
Pfam	UHGV-0008436_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0008436_1	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0008436_1	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0008436_1	PF01183,PF01471,MF_01672,COG3757,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0008436_2	phrog_199	95.9	3.8e-28	holin	lysis
UniRef90	UHGV-0008436_2	UniRef90_A0A174D4Y4	171.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0008436_2	1280689.AUJC01000003_gene982	171.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0008436_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0008436_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0008436_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0008436_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0008436_4	phrog_17334	53.0	0.0000000000000041	N/A	unknown function
eggNOG-mapper	UHGV-0008436_4	189425.PGRAT_17530	62.0	0.000000000239	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0008436_4	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0008436_5	phrog_6616	147.4	4.90454e-44	tail protein	tail
eggNOG-mapper	UHGV-0008436_5	1414720.CBYM010000002_gene560	194.0	0	Phage minor structural protein	N/A
COG	UHGV-0008436_5	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0008436_5	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0008436_6	phrog_1194	141.1	2.79979e-42	N/A	unknown function
UniRef90	UHGV-0008436_6	UniRef90_A0A4U9RD70	153.0	0	Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-0008436_6	1414720.CBYM010000002_gene561	160.0	0	N/A	N/A
Pfam	UHGV-0008436_6	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0008436_6	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0008436_7	1294142.CINTURNW_3839	64.3	0.0000000026	N/A	N/A
PHROG	UHGV-0008436_8	phrog_1535	350.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0008436_8	UniRef90_UPI0003F4F1A1	285.0	0	membrane protein	N/A
eggNOG-mapper	UHGV-0008436_8	1321778.HMPREF1982_02681	350.0	0	SLT domain	N/A
COG	UHGV-0008436_8	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0008436_9	phrog_2066	50.9	0.000000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0008436_9	1280689.AUJC01000003_gene975	105.0	6.2e-28	N/A	N/A
PHROG	UHGV-0008436_10	phrog_183	60.3	3.7e-17	tail chaperone protein	tail
UniRef90	UHGV-0008436_10	UniRef90_UPI000591783D	148.0	6.72623e-44	N/A	N/A
eggNOG-mapper	UHGV-0008436_10	1499683.CCFF01000014_gene3902	148.0	1.12104e-44	N/A	N/A
Pfam	UHGV-0008436_10	PF19591	N/A	N/A	N/A	DUF6096
structural_annotation	UHGV-0008436_10	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0008436_11	phrog_158	68.3	1.6e-19	major tail protein	tail
UniRef90	UHGV-0008436_11	UniRef90_UPI001158F5FB	178.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0008436_11	1280689.AUJC01000003_gene972	172.0	0	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0008436_11	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0008436_11	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0008436_12	phrog_78	65.2	1.1e-18	tail terminator	connector
eggNOG-mapper	UHGV-0008436_12	1294142.CINTURNW_1695	187.0	0	N/A	N/A
structural_annotation	UHGV-0008436_12	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0008436_13	phrog_5	81.5	1.2e-23	tail completion or Neck1 protein	connector
UniRef90	UHGV-0008436_13	UniRef90_A0A1C5S5J2	149.0	1.47977e-42	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0008436_13	1504823.CCMM01000008_gene1037	125.0	4.18e-34	N/A	N/A
Pfam	UHGV-0008436_13	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0008436_13	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0008436_13	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0008436_14	phrog_2168	122.4	1.6e-36	N/A	unknown function
eggNOG-mapper	UHGV-0008436_14	1499683.CCFF01000014_gene3906	148.0	4.2039e-45	N/A	N/A
structural_annotation	UHGV-0008436_14	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0008436_15	phrog_132	92.9	2e-27	head-tail adaptor	connector
UniRef90	UHGV-0008436_15	UniRef90_A0A1C6I0N0	149.0	9.80909e-45	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0008436_15	1280689.AUJC01000003_gene968	135.0	5.09001e-40	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0008436_15	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0008436_15	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0008436_16	phrog_422	258.6	0	major head protein	head and packaging
UniRef90	UHGV-0008436_16	UniRef90_A0A6I1BLW9	496.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0008436_16	1280692.AUJL01000025_gene2079	482.0	0	N/A	N/A
structural_annotation	UHGV-0008436_16	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0008436_17	phrog_172	147.9	5.88545e-44	head scaffolding protein	head and packaging
UniRef90	UHGV-0008436_17	UniRef90_UPI00189D679E	239.0	0	N/A	N/A
eggNOG-mapper	UHGV-0008436_17	1280689.AUJC01000003_gene966	264.0	0	N/A	N/A
Pfam	UHGV-0008436_17	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0008436_17	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0008436_18	phrog_2657	194.2	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0008436_18	UniRef90_A0A0V8QIT3	325.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0008436_18	33035.JPJF01000043_gene993	279.0	0	N/A	N/A
Pfam	UHGV-0008436_18	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0008436_18	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0008436_18	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0008436_18	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0008436_20	phrog_2428	100.3	1.3e-29	N/A	unknown function
UniRef90	UHGV-0008436_20	UniRef90_UPI0015714EBB	182.0	0	ABC transporter ATPase	N/A
eggNOG-mapper	UHGV-0008436_20	272562.CA_C1899	157.0	0	N/A	N/A
dbAPIS	UHGV-0008436_20	APIS024	N/A	N/A	Tad1 proteins are not an enzymes, but are 'sponges' that bind and sequester the immune signaling molecule (cyclic ADP-ribose or gcADPR) produced by TIR-domain proteins, thus decoupling phage sensing from immune effector activation and rendering Thoeris inactive.	N/A
NCBIFam	UHGV-0008436_21	NF040910.1	N/A	N/A	CD1375 family protein	N/A
eggNOG-mapper	UHGV-0008436_24	411470.RUMGNA_02214	82.8	1.66e-19	N/A	N/A
structural_annotation	UHGV-0008436_24	PF08948,MF_01537,NF007541,COG3123	N/A	N/A	N/A	N/A
PHROG	UHGV-0008436_27	phrog_3675	107.2	6.8e-32	N/A	unknown function
UniRef90	UHGV-0008436_27	UniRef90_A0A1M7JY59	144.0	6.92241e-43	YjcQ protein	N/A
eggNOG-mapper	UHGV-0008436_27	397290.C810_01422	108.0	3.06e-29	YjcQ protein	N/A
Pfam	UHGV-0008436_27	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0008436_27	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-0008436_29	phrog_115	361.2	0	minor head protein	head and packaging
UniRef90	UHGV-0008436_29	UniRef90_UPI001A9A821E	499.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0008436_29	1280689.AUJC01000003_gene964	495.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0008436_29	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
Pfam	UHGV-0008436_29	PF15640	N/A	N/A	Metallopeptidase toxin 4	Tox-MPTase4
NCBIFam	UHGV-0008436_29	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0008436_29	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0008436_29	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0008436_30	phrog_64	395.2	0	portal protein	head and packaging
UniRef90	UHGV-0008436_30	UniRef90_UPI0015B74D26	722.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0008436_30	1280692.AUJL01000025_gene2083	728.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0008436_30	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0008436_30	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0008436_30	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0008436_31	K06909	365.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0008436_31	phrog_3717	161.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0008436_31	UniRef90_UPI001A9034D2	711.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0008436_31	1280689.AUJC01000003_gene962	700.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0008436_31	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0008436_31	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0008436_31	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0008436_31	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0008436_31	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0008436_32	K07474	133.0	3.7e-39	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0008436_32	phrog_51	147.8	4.2039e-44	terminase small subunit	head and packaging
UniRef90	UHGV-0008436_32	UniRef90_UPI001C8DFA18	219.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0008436_32	1280689.AUJC01000003_gene961	191.0	0	Terminase small subunit	N/A
Pfam	UHGV-0008436_32	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0008436_32	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0008436_32	PF03592,COG3728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0008436_33	318464.IO99_00535	115.0	4.65e-33	N/A	N/A
structural_annotation	UHGV-0008436_33	PF10922,MF_00839	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0008436	Yes	23,981	31	59	1