vOTU vOTU-153998

vOTU: vOTU-153998

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-153998
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00673 → vOTU-153998
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1477200
Biosample ID	N/A
Genome length (bp)	29,730 bps
CheckV completeness	84.50% (Medium-quality)
CDS count	39
CDS density	94.19%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	867	Host agreement	81.55
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	137	Host agreement	94.16

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 84.5)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1477200_1	K07273	84.1	2.1e-24	acm; lysozyme	N/A
PHROG	UHGV-1477200_1	phrog_6745	79.0	5.7e-23	endolysin	lysis
UniRef90	UHGV-1477200_1	UniRef90_E6JZS3	77.8	1.7e-16	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-1477200_1	246199.CUS_5914	95.5	1.05e-22	hydrolase, family 25	N/A
Pfam	UHGV-1477200_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1477200_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1477200_1	PF01183	N/A	N/A	N/A	N/A
PHROG	UHGV-1477200_3	phrog_1067	103.9	1.4e-30	minor head protein	head and packaging
UniRef90	UHGV-1477200_3	UniRef90_A0A1G5CPD2	162.0	1.24015e-42	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-1477200_3	1567011.A0A0A7RUI9_9VIRU	70.1	0.000000000358	N-acetylmuramoyl-L-alanine amidase activity	N/A
NCBIFam	UHGV-1477200_3	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-1477200_3	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1477200_4	phrog_33	67.7	2.6e-19	distal tail protein Dit	tail
UniRef90	UHGV-1477200_4	UniRef90_UPI000BB5198E	73.6	0.00000000000513	phage tail family protein	N/A
eggNOG-mapper	UHGV-1477200_4	272623.L63101	68.9	0.000000000051	phage tail	N/A
COG	UHGV-1477200_4	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1477200_4	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1477200_5	K20282	49.7	1.1e-16	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-1477200_5	phrog_1272	270.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1477200_5	UniRef90_A0A412ULX0	848.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1477200_5	588581.Cpap_1264	273.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1477200_5	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1477200_5	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1477200_5	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1477200_7	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1477200_8	phrog_88	61.6	1.2e-17	major tail protein	tail
UniRef90	UHGV-1477200_8	UniRef90_A0A1G5CNS8	174.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1477200_8	411470.RUMGNA_02319	60.5	0.0000000106	COG NOG11304 non supervised orthologous group	N/A
NCBIFam	UHGV-1477200_8	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1477200_8	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-1477200_9	UniRef90_UPI000E5564A4	173.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1477200_9	1118057.CAGX01000043_gene486	67.0	0.00000000000244	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-1477200_9	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1477200_10	1123315.AUIP01000001_gene1429	54.3	0.0000000652	N/A	N/A
structural_annotation	UHGV-1477200_10	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-1477200_11	phrog_19734	65.8	5.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-1477200_11	86416.Clopa_0343	55.1	0.0000000375	N/A	N/A
structural_annotation	UHGV-1477200_11	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1477200_12	phrog_749	51.5	0.000000000000014	N/A	unknown function
UniRef90	UHGV-1477200_12	UniRef90_A0A1G5CMX8	103.0	1.01e-26	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1477200_12	349161.Dred_2603	54.7	0.0000000255	N/A	N/A
PHROG	UHGV-1477200_13	phrog_10	113.3	2.3e-33	major head protein	head and packaging
UniRef90	UHGV-1477200_13	UniRef90_A0A412ULW9	577.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1477200_13	1211817.CCAT010000053_gene2132	327.0	0	Phage capsid family	N/A
Pfam	UHGV-1477200_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1477200_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1477200_13	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1477200_13	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1477200_14	K01358	147.8	8.96831e-44	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1477200_14	phrog_94	215.0	0	head maturation protease	head and packaging
UniRef90	UHGV-1477200_14	UniRef90_A0A412ULU1	384.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1477200_14	86416.Clopa_0340	174.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1477200_14	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1477200_14	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1477200_14	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1477200_15	phrog_12	102.4	3.4e-30	portal protein	head and packaging
UniRef90	UHGV-1477200_15	UniRef90_A0A412ULV9	577.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1477200_15	1415774.U728_1254	269.0	0	Phage portal protein	N/A
Pfam	UHGV-1477200_15	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1477200_15	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1477200_15	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1477200_15	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1477200_16	phrog_9	286.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1477200_16	UniRef90_A0A412UM03	981.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1477200_16	86416.Clopa_0337	621.0	0	Phage Terminase	N/A
Pfam	UHGV-1477200_16	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1477200_16	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1477200_16	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1477200_16	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1477200_17	phrog_5110	81.8	5.6e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1477200_17	UniRef90_UPI00057D0A7C	114.0	8.42e-31	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1477200_17	86416.Clopa_0336	106.0	1.1e-28	N/A	N/A
Pfam	UHGV-1477200_17	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1477200_17	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1477200_18	phrog_119	72.8	4.6e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1477200_18	UniRef90_A0A412ULY9	182.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1477200_18	1405.DJ92_863	87.0	6.57e-21	HNH endonuclease	N/A
Pfam	UHGV-1477200_18	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1477200_18	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1477200_19	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1477200_21	phrog_3584	156.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1477200_21	1235800.C819_00515	88.6	3.43e-18	N/A	N/A
structural_annotation	UHGV-1477200_21	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-1477200_23	phrog_824	70.9	1.7e-20	N/A	unknown function
UniRef90	UHGV-1477200_23	UniRef90_A0A1G5CM57	106.0	4.87e-28	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1477200_23	665956.HMPREF1032_00132	86.7	1.07e-20	VRR_NUC	N/A
PHROG	UHGV-1477200_24	phrog_24518	82.6	4.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-1477200_24	1519439.JPJG01000077_gene922	103.0	5.77e-25	N/A	N/A
KOfam	UHGV-1477200_26	K03427	154.5	1.4013e-45	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1477200_26	phrog_6380	362.0	0	DNA methyltransferase	other
UniRef90	UHGV-1477200_26	UniRef90_UPI001B3C6DA9	658.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-1477200_26	1444306.JFZC01000034_gene2643	315.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-1477200_26	MTase_I_00005	92.5	2.8e-28	Type I methyltransferase	RM
Pfam	UHGV-1477200_26	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1477200_26	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1477200_26	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-1477200_27	phrog_15609	120.4	4.1e-36	N/A	unknown function
UniRef90	UHGV-1477200_27	UniRef90_A0A373SLQ6	106.0	1.05e-22	N/A	N/A
eggNOG-mapper	UHGV-1477200_27	1514668.JOOA01000001_gene225	67.0	0.00000000133	N/A	N/A
structural_annotation	UHGV-1477200_27	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1477200_28	phrog_8470	253.8	0	N/A	unknown function
UniRef90	UHGV-1477200_28	UniRef90_A0A1M7BII1	165.0	1.24e-39	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-1477200_28	397288.C806_03897	149.0	6.57e-35	PcfJ-like protein	N/A
Pfam	UHGV-1477200_28	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1477200_28	PF14284	N/A	N/A	N/A	N/A
Pfam	UHGV-1477200_32	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1477200_32	PF13443,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1477200_33	UniRef90_A0A374DVN3	154.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1477200_33	411902.CLOBOL_02554	60.1	0.0000000000454	N/A	N/A
UniRef90	UHGV-1477200_34	UniRef90_A0A373XLN2	121.0	1.39e-32	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1477200_34	999413.HMPREF1094_00245	63.5	0.00000000039	Peptidase S24-like	N/A
COG	UHGV-1477200_34	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-1477200_34	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1477200_35	phrog_1914	151.1	5.60519e-45	N/A	unknown function
UniRef90	UHGV-1477200_35	UniRef90_UPI000E543E50	293.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1477200_35	1160721.RBI_I01604	169.0	0	N/A	N/A
Pfam	UHGV-1477200_35	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1477200_35	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1477200_35	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-1477200_36	UniRef90_A0A374DTF3	80.9	0.00000000000000155	N/A	N/A
Pfam	UHGV-1477200_37	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
PHROG	UHGV-1477200_38	phrog_497	43.2	0.0000000000057	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1477200_38	UniRef90_A0A7X3SKA1	145.0	5.0727e-43	Type II toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-1477200_38	1235793.C809_01888	144.0	3.15292e-43	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-1477200_38	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-1477200_38	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
KOfam	UHGV-1477200_39	K14059	188.3	0	int; integrase	N/A
PHROG	UHGV-1477200_39	phrog_1	164.9	0	integrase	integration and excision
UniRef90	UHGV-1477200_39	UniRef90_UPI00164B8B01	389.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1477200_39	1095750.HMPREF9970_1688	235.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1477200_39	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1477200_39	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1477200_39	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1477200	Yes	29,730	37	85	1