vOTU vOTU-154656

vOTU: vOTU-154656

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-154656
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00025 → vSUBFAM-00366 → vOTU-154656
Host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660
Host range breadth	Family
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0016262
Biosample ID	SAMEA4765940
Genome length (bp)	19,615 bps
CheckV completeness	51.36% (Medium-quality)
CDS count	37
CDS density	93.48%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660	Total connections	6	Host agreement	83.33
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 51.36)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0016262_1	K19223	332.0	0	lytF, cwlE; peptidoglycan DL-endopeptidase LytF [EC:3.4.-.-]	N/A
PHROG	UHGV-0016262_1	phrog_435	67.8	1.2e-19	endolysin	lysis
UniRef90	UHGV-0016262_1	UniRef90_R6MBA4	580.0	0	Peptidoglycan-binding LysM	N/A
eggNOG-mapper	UHGV-0016262_1	373903.Hore_06410	223.0	0	Cell Wall Hydrolase	N/A
Pfam	UHGV-0016262_1	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0016262_1	PF04225	N/A	N/A	Opacity-associated protein A LysM-like domain	OapA
Pfam	UHGV-0016262_1	PF01476	N/A	N/A	LysM domain	LysM
NCBIFam	UHGV-0016262_1	TIGR02899.1	N/A	N/A	SafA/ExsA family spore coat assembly protein	N/A
COG	UHGV-0016262_1	COG1388	N/A	N/A	LysM repeat	N/A
KOfam	UHGV-0016262_2	K01449	53.3	0.0000000000000059	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
UniRef90	UHGV-0016262_2	UniRef90_UPI001C39B3A6	90.1	3.33e-22	Cell wall hydrolase	N/A
eggNOG-mapper	UHGV-0016262_2	1227360.C176_03878	98.6	9.75e-26	Cell Wall Hydrolase	N/A
COG	UHGV-0016262_2	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
KOfam	UHGV-0016262_3	K06400	289.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0016262_3	phrog_95	322.7	0	integrase	integration and excision
UniRef90	UHGV-0016262_3	UniRef90_R7FHL4	264.0	0	Phage site-specific recombinase	N/A
eggNOG-mapper	UHGV-0016262_3	1151292.QEW_0309	225.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0016262_3	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0016262_3	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0016262_3	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0016262_3	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0016262_3	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0016262_4	phrog_750	66.4	2.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0016262_4	742723.HMPREF9477_00931	62.4	0.0000000000293	N/A	N/A
structural_annotation	UHGV-0016262_4	PF13835,NF040858	N/A	N/A	N/A	N/A
KOfam	UHGV-0016262_7	K07729	58.4	1.7e-16	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0016262_7	phrog_8	63.2	5.7e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0016262_7	UniRef90_A0A353JBB9	78.2	3.99e-16	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0016262_7	1280668.ATVT01000006_gene1322	53.9	0.000000879	Metal dependent phosphohydrolases with conserved 'HD' motif.	N/A
Pfam	UHGV-0016262_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0016262_7	COG0317	N/A	N/A	(p)ppGpp synthase/hydrolase, HD superfamily	N/A
structural_annotation	UHGV-0016262_7	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0016262_8	K07729	42.5	0.000000000013	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0016262_8	phrog_2439	40.7	0.000000000024	transcriptional regulator	transcription regulation
UniRef90	UHGV-0016262_8	UniRef90_UPI00195906B3	52.0	0.000000609	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0016262_8	1003200.AXXA_04918	51.6	0.00000106	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0016262_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0016262_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0016262_8	PF13560,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0016262_12	K02086	80.2	2.4e-23	dnaD; DNA replication protein	N/A
PHROG	UHGV-0016262_12	phrog_16304	79.6	3.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-0016262_12	1168289.AJKI01000067_gene1520	76.6	0.00000000000000597	N/A	N/A
Pfam	UHGV-0016262_12	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0016262_12	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0016262_12	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0016262_12	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-0016262_13	phrog_9804	53.9	9.8e-16	N/A	unknown function
UniRef90	UHGV-0016262_13	UniRef90_R6M669	55.1	0.00000176	Inhibitor_G39P domain-containing protein	N/A
Pfam	UHGV-0016262_13	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0016262_13	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0016262_15	K03111	65.0	2e-18	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0016262_15	phrog_44	65.1	1.9e-18	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016262_15	UniRef90_A0A7X6XCI7	103.0	1.33e-26	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0016262_15	1121914.AUDW01000003_gene1053	85.9	2.87e-20	Single-strand binding protein family	N/A
Pfam	UHGV-0016262_15	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0016262_15	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0016262_15	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0016262_16	phrog_674	78.5	8.9e-23	N/A	unknown function
UniRef90	UHGV-0016262_16	UniRef90_A0A374N9T8	130.0	3.66e-32	N/A	N/A
eggNOG-mapper	UHGV-0016262_16	641112.ACOK01000103_gene524	120.0	1.22e-30	N/A	N/A
structural_annotation	UHGV-0016262_16	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0016262_17	phrog_2760	188.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016262_17	UniRef90_A0A353JB43	429.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0016262_17	1122173.AXVL01000068_gene1414	198.0	0	DNA synthesis involved in double-strand break repair via homologous recombination	N/A
Pfam	UHGV-0016262_17	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0016262_17	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0016262_17	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0016262_17	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0016262_18	K06167	47.4	0.00000000000022	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0016262_18	phrog_392	128.4	7.2e-38	metal-dependent hydrolase	other
UniRef90	UHGV-0016262_18	UniRef90_A0A353JB44	401.0	0	Lactamase_B domain-containing protein	N/A
eggNOG-mapper	UHGV-0016262_18	665956.HMPREF1032_03101	184.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-0016262_18	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0016262_18	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0016262_18	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
KOfam	UHGV-0016262_21	K03111	150.9	1.26117e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0016262_21	phrog_44	163.4	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016262_21	UniRef90_A0A353JB48	187.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0016262_21	1307436.PBF_22729	161.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0016262_21	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0016262_21	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0016262_21	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0016262_21	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0016262_21	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0016262_22	K06940	58.2	1.6e-16	N/A	N/A
PHROG	UHGV-0016262_22	phrog_32498	60.8	1.7e-17	N/A	unknown function
UniRef90	UHGV-0016262_22	UniRef90_A0A7G5N1F4	53.5	0.00000543	YkgJ family cysteine cluster protein	N/A
Pfam	UHGV-0016262_22	PF03692	N/A	N/A	Putative zinc- or iron-chelating domain	CxxCxxCC
COG	UHGV-0016262_22	COG0727	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016262_22	PF03692	N/A	N/A	N/A	N/A
PHROG	UHGV-0016262_23	phrog_72	51.5	0.000000000000017	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0016262_23	445972.ANACOL_00148	87.0	6.95e-19	N/A	N/A
structural_annotation	UHGV-0016262_23	PF05772,NF007281	N/A	N/A	N/A	N/A
Pfam	UHGV-0016262_30	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0016262_30	PF04545,MF_00674,NF008895,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0016262_31	phrog_2412	41.8	1.9e-17	N/A	unknown function
UniRef90	UHGV-0016262_31	UniRef90_UPI001E414EFE	58.9	0.00000000923	KGG domain-containing protein	N/A
eggNOG-mapper	UHGV-0016262_31	563192.HMPREF0179_00168	83.6	2.17e-19	N/A	N/A
KOfam	UHGV-0016262_32	K06909	243.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0016262_32	phrog_3717	215.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0016262_32	UniRef90_UPI00082C9116	613.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0016262_32	445971.ANASTE_00711	598.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0016262_32	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0016262_32	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0016262_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0016262_32	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0016262_35	phrog_156	111.4	5.7e-34	portal protein	head and packaging
eggNOG-mapper	UHGV-0016262_35	445971.ANASTE_00716	415.0	0	N/A	N/A
structural_annotation	UHGV-0016262_35	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0016262	Yes	19,615	28	51	1