vOTU vOTU-155902

vOTU: vOTU-155902

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-155902
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00035 → vOTU-155902
Host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella
Host range breadth	Genus
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0103598
Biosample ID	SAMEA3708657
Genome length (bp)	37,778 bps
CheckV completeness	89.28% (Medium-quality)
CDS count	45
CDS density	86.80%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella	Total connections	17	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 89.28)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0103598_1	K14059	194.3	0	int; integrase	N/A
PHROG	UHGV-0103598_1	phrog_1	200.5	0	integrase	integration and excision
UniRef90	UHGV-0103598_1	UniRef90_A0A6N2YQ86	494.0	0	Transposase from transposon Tn916	N/A
eggNOG-mapper	UHGV-0103598_1	1410625.JHWK01000005_gene1288	378.0	0	Phage integrase family	N/A
Pfam	UHGV-0103598_1	PF02920	N/A	N/A	DNA binding domain of tn916 integrase	Integrase_DNA
Pfam	UHGV-0103598_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0103598_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0103598_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0103598_1	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0103598_2	UniRef90_UPI001C102D49	79.3	0.0000000000000518	N/A	N/A
eggNOG-mapper	UHGV-0103598_2	1121296.JONJ01000001_gene1689	84.7	8.18e-17	N/A	N/A
Pfam	UHGV-0103598_2	PF18941	N/A	N/A	N/A	DUF5688
PHROG	UHGV-0103598_3	phrog_7245	56.8	2e-16	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0103598_3	UniRef90_A0A6N7YDD2	222.0	0	ArdcN domain-containing protein	N/A
eggNOG-mapper	UHGV-0103598_3	1280688.AUJB01000008_gene899	205.0	0	N/A	N/A
Pfam	UHGV-0103598_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0103598_3	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
structural_annotation	UHGV-0103598_3	PF08401,PF18818,COG4227	N/A	N/A	N/A	N/A
KOfam	UHGV-0103598_4	K07273	145.0	6.89439e-43	acm; lysozyme	N/A
PHROG	UHGV-0103598_4	phrog_6745	224.6	0	endolysin	lysis
UniRef90	UHGV-0103598_4	UniRef90_A0A4Q7P2S9	502.0	0	GH25 family lysozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0103598_4	411460.RUMTOR_01337	453.0	0	lysozyme activity	N/A
Pfam	UHGV-0103598_4	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0103598_4	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0103598_4	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0103598_4	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0103598_4	PF01183,TIGR02594,COG3757,COG4322	N/A	N/A	N/A	N/A
PHROG	UHGV-0103598_5	phrog_881	72.7	3.1e-21	holin	lysis
UniRef90	UHGV-0103598_5	UniRef90_UPI0018A8FD4D	64.7	0.00000000000298	phage holin	N/A
eggNOG-mapper	UHGV-0103598_5	742740.HMPREF9474_02251	57.8	0.000000000254	Putative phage holin Dp-1	N/A
Pfam	UHGV-0103598_5	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0103598_5	PF16938	N/A	N/A	N/A	N/A
Pfam	UHGV-0103598_9	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
structural_annotation	UHGV-0103598_9	PF13306	N/A	N/A	N/A	N/A
PHROG	UHGV-0103598_11	phrog_1067	124.9	5.7e-38	minor head protein	head and packaging
UniRef90	UHGV-0103598_11	UniRef90_A0A7G9G6Y3	130.0	2.36e-28	Phage tail protein	N/A
eggNOG-mapper	UHGV-0103598_11	1123263.AUKY01000068_gene489	112.0	5.56e-23	Phage minor structural protein	N/A
Pfam	UHGV-0103598_11	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0103598_11	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0103598_11	COG4926	N/A	N/A	Phage-related protein	N/A
UniRef90	UHGV-0103598_12	UniRef90_UPI0013C31C6F	91.7	9.5e-19	phage tail family protein	N/A
eggNOG-mapper	UHGV-0103598_12	1123263.AUKY01000068_gene490	119.0	4.91e-30	tail component	N/A
COG	UHGV-0103598_12	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0103598_12	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0103598_13	K11499	44.1	0.00000000000017	CENPF; centromere protein F	N/A
PHROG	UHGV-0103598_13	phrog_167	93.1	5.5e-28	tail length tape measure protein	tail
UniRef90	UHGV-0103598_13	UniRef90_UPI00041C1A74	372.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0103598_13	1123075.AUDP01000020_gene1522	345.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0103598_13	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0103598_13	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0103598_13	PF10145,PF05384,TIGR01760,NF006545,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0103598_15	1123075.AUDP01000020_gene1519	74.7	0.00000000000000446	N/A	N/A
structural_annotation	UHGV-0103598_15	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0103598_16	phrog_88	93.7	2.2e-27	major tail protein	tail
UniRef90	UHGV-0103598_16	UniRef90_A0A7X2TMG2	145.0	7.20996e-41	Major tail protein	N/A
eggNOG-mapper	UHGV-0103598_16	1235835.C814_01281	65.5	0.000000000137	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0103598_16	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0103598_16	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0103598_16	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0103598_17	UniRef90_A0A3D4X921	93.2	2.52e-22	Phage tail protein	N/A
eggNOG-mapper	UHGV-0103598_17	97139.C824_05966	99.8	1e-25	N/A	N/A
structural_annotation	UHGV-0103598_17	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0103598_18	phrog_5	51.7	0.000000000000023	tail completion or Neck1 protein	connector
UniRef90	UHGV-0103598_18	UniRef90_A0A174CK72	105.0	1.9e-26	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0103598_18	97139.C824_05967	119.0	1.21e-32	Phage protein, HK97 gp10 family	N/A
structural_annotation	UHGV-0103598_18	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0103598_19	phrog_1951	65.0	1.1e-18	head-tail adaptor	connector
eggNOG-mapper	UHGV-0103598_19	1235792.C808_03061	90.5	3.05e-22	N/A	N/A
structural_annotation	UHGV-0103598_19	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0103598_20	phrog_5223	58.4	9.7e-17	neck protein	connector
eggNOG-mapper	UHGV-0103598_20	411459.RUMOBE_00934	93.2	1.25e-23	N/A	N/A
structural_annotation	UHGV-0103598_20	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0103598_21	phrog_10	176.1	0	major head protein	head and packaging
UniRef90	UHGV-0103598_21	UniRef90_A0A2T3F0H1	323.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0103598_21	411459.RUMOBE_00935	293.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0103598_21	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0103598_21	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0103598_21	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0103598_21	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0103598_22	K01358	130.3	1.9e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0103598_22	phrog_94	194.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0103598_22	UniRef90_A0A7X2P7H4	251.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0103598_22	411459.RUMOBE_00936	233.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0103598_22	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0103598_22	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0103598_22	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0103598_23	phrog_12	271.7	0	portal protein	head and packaging
UniRef90	UHGV-0103598_23	UniRef90_UPI000E534E57	489.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0103598_23	411459.RUMOBE_00937	477.0	0	N/A	N/A
Pfam	UHGV-0103598_23	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0103598_23	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0103598_23	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0103598_23	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0103598_24	phrog_9	231.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0103598_24	UniRef90_F7JW13	514.0	0	Phage terminase	N/A
eggNOG-mapper	UHGV-0103598_24	97139.C824_05973	514.0	0	Terminase	N/A
Pfam	UHGV-0103598_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0103598_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0103598_24	PF20441,MF_04144,TIGR01547,COG4626	N/A	N/A	N/A	N/A
UniRef90	UHGV-0103598_25	UniRef90_UPI001D588B05	64.3	0.000000000099	terminase large subunit	N/A
eggNOG-mapper	UHGV-0103598_25	536233.CLO_1421	116.0	6.56e-29	Terminase	N/A
COG	UHGV-0103598_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
PHROG	UHGV-0103598_26	phrog_314	107.5	1.7e-31	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0103598_26	UniRef90_UPI001957CEE4	166.0	0	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-0103598_26	476272.RUMHYD_01755	94.7	6.7e-21	GIY-YIG type nucleases (URI domain)	N/A
PADLOC	UHGV-0103598_26	HEase_00030	45.3	0.0000000000026	homing endonuclease	RM
Pfam	UHGV-0103598_26	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
NCBIFam	UHGV-0103598_26	TIGR01453.1	N/A	N/A	group I intron endonuclease	N/A
COG	UHGV-0103598_26	COG3860	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0103598_26	PF19835,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0103598_27	phrog_10517	97.9	6.8e-29	terminase large subunit	head and packaging
UniRef90	UHGV-0103598_27	UniRef90_UPI000A06CF5E	163.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0103598_27	536233.CLO_1421	155.0	9.16449e-43	Terminase	N/A
Pfam	UHGV-0103598_27	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
COG	UHGV-0103598_27	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
PHROG	UHGV-0103598_28	phrog_83	92.5	5.4e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0103598_28	UniRef90_UPI00189C0353	135.0	9.33e-38	phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0103598_28	1235792.C808_03067	122.0	2.96e-33	Phage terminase, small subunit	N/A
Pfam	UHGV-0103598_28	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0103598_28	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0103598_28	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0103598_28	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0103598_29	phrog_144	74.7	1.4e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0103598_29	UniRef90_A5TX31	119.0	3.86e-32	Bacteriophage protein	N/A
eggNOG-mapper	UHGV-0103598_29	393480.FNP_1683	119.0	6.48e-33	N/A	N/A
UniRef90	UHGV-0103598_33	UniRef90_F7UY68	102.0	1.4e-19	Cytochrome c	N/A
eggNOG-mapper	UHGV-0103598_33	502558.EGYY_02820	102.0	2.35e-20	protein involved in exopolysaccharide biosynthesis	N/A
COG	UHGV-0103598_33	COG3206	N/A	N/A	Exopolysaccharide export protein/domain GumC/Wzc1	N/A
KOfam	UHGV-0103598_34	K07727	54.1	0.0000000000000043	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0103598_34	UniRef90_R9KWV6	103.0	1.13e-27	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0103598_34	397288.C806_01610	103.0	1.9e-28	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0103598_34	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0103598_34	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0103598_34	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0103598_36	1410631.JHWZ01000018_gene2234	92.0	9.89e-19	Pfam:CtkA_N	N/A
COG	UHGV-0103598_36	COG3550	N/A	N/A	Serine/threonine protein kinase HipA, toxin component of the HipAB toxin-antitoxin module	N/A
PHROG	UHGV-0103598_40	phrog_864	105.3	5.6e-31	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0103598_40	UniRef90_UPI001D071268	141.0	1.97e-32	phage/plasmid primase, P4 family	N/A
eggNOG-mapper	UHGV-0103598_40	1159488.SEQMU2_02035	112.0	6.97e-23	D5 N terminal like	N/A
Pfam	UHGV-0103598_40	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0103598_40	PF19263	N/A	N/A	N/A	DUF5906
COG	UHGV-0103598_40	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0103598_40	PF05272,PF03288,PF08706,TIGR01613,COG3378	N/A	N/A	N/A	N/A
UniRef90	UHGV-0103598_43	UniRef90_UPI001F45D6BB	62.4	0.0000000000328	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0103598_43	203119.Cthe_1750	55.5	0.00000000297	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0103598_43	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
KOfam	UHGV-0103598_44	K03630	62.7	8.4e-18	radC; DNA repair protein RadC	N/A
PHROG	UHGV-0103598_44	phrog_10276	53.4	0.0000000000000046	DNA repair protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0103598_44	UniRef90_A0A7D7ZUK3	55.5	0.0000019	DNA repair protein	N/A
Pfam	UHGV-0103598_44	PF04002	N/A	N/A	RadC-like JAB domain	RadC
COG	UHGV-0103598_44	COG2003	N/A	N/A	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	N/A
KOfam	UHGV-0103598_45	K14059	194.3	0	int; integrase	N/A
PHROG	UHGV-0103598_45	phrog_1	188.6	0	integrase	integration and excision
UniRef90	UHGV-0103598_45	UniRef90_A0A174EBQ9	796.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0103598_45	1121115.AXVN01000029_gene656	800.0	0	N/A	N/A
Pfam	UHGV-0103598_45	PF02920	N/A	N/A	DNA binding domain of tn916 integrase	Integrase_DNA
Pfam	UHGV-0103598_45	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0103598_45	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0103598_45	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0103598	Yes	37,778	40	89	1