vOTU vOTU-156093

vOTU: vOTU-156093

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-156093
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00261 → vGENUS-00170 → vOTU-156093
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0072538
Biosample ID	SAMEA2737759
Genome length (bp)	27,073 bps
CheckV completeness	77.71% (Medium-quality)
CDS count	39
CDS density	93.54%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	244	Host agreement	88.11
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	195	Host agreement	91.79

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 77.71)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0072538_1	K14059	156.2	0	int; integrase	N/A
PHROG	UHGV-0072538_1	phrog_1	163.4	0	integrase	integration and excision
UniRef90	UHGV-0072538_1	UniRef90_A0A372SJR7	435.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0072538_1	469596.HMPREF9488_03835	469.0	0	COG COG4974 Site-specific recombinase XerD	N/A
Pfam	UHGV-0072538_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0072538_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0072538_2	PF21227	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0072538_3	PF18768,MF_02066,NF011886,COG5010	N/A	N/A	N/A	N/A
PHROG	UHGV-0072538_4	phrog_1914	99.7	7e-30	N/A	unknown function
UniRef90	UHGV-0072538_4	UniRef90_R6DVV5	236.0	0	Predicted Zn peptidase	N/A
eggNOG-mapper	UHGV-0072538_4	1160721.RBI_I01604	143.0	2.37999e-40	N/A	N/A
Pfam	UHGV-0072538_4	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0072538_4	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0072538_4	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0072538_5	K22300	50.1	0.00000000000006	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0072538_5	phrog_2967	68.3	9.3e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0072538_5	UniRef90_A0A354M9E0	75.5	0.0000000000000128	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0072538_5	1321784.HMPREF1987_01096	60.5	0.00000000281	Peptidase S24-like	N/A
Pfam	UHGV-0072538_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0072538_5	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
KOfam	UHGV-0072538_6	K22300	50.3	0.000000000000049	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0072538_6	phrog_3	45.1	0.0000000000043	transcriptional repressor	transcription regulation
UniRef90	UHGV-0072538_6	UniRef90_A0A0H5SHR8	70.1	0.00000000000002	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0072538_6	1321784.HMPREF1987_01097	60.1	0.0000000000318	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0072538_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0072538_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0072538_6	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0072538_9	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0072538_10	K06284	115.3	3.9e-34	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	N/A
PHROG	UHGV-0072538_10	phrog_4681	97.7	5e-29	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0072538_10	UniRef90_A0A2N2DP50	108.0	4.97e-29	AbrB family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0072538_10	1120998.AUFC01000033_gene2303	103.0	7.97e-28	TIGRFAM looped-hinge helix DNA binding domain, AbrB family	N/A
Pfam	UHGV-0072538_10	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-0072538_10	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-0072538_10	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-0072538_10	PF15937,TIGR01439,NF004424,COG2002	N/A	N/A	N/A	N/A
PHROG	UHGV-0072538_13	phrog_3584	129.4	3e-38	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0072538_13	411470.RUMGNA_02047	134.0	4.38e-35	N/A	N/A
structural_annotation	UHGV-0072538_13	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0072538_14	K03700	96.1	4.4e-28	recU; recombination protein U	N/A
PHROG	UHGV-0072538_14	phrog_843	136.9	7.50003e-41	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0072538_14	UniRef90_A0A1H0W5Y9	172.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0072538_14	537013.CLOSTMETH_01720	153.0	1.96182e-44	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0072538_14	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0072538_14	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0072538_14	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0072538_15	1232449.BAHV02000016_gene1829	136.0	2.41e-39	N/A	N/A
KOfam	UHGV-0072538_16	K00558	221.9	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0072538_16	phrog_116	257.9	0	DNA methyltransferase	other
UniRef90	UHGV-0072538_16	UniRef90_A0A350THX9	741.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0072538_16	1121334.KB911073_gene1852	674.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0072538_16	MTase_II_00020	95.7	1.4e-30	Type II methyltransferase	RM
Pfam	UHGV-0072538_16	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0072538_16	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0072538_16	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0072538_17	phrog_997	120.2	1.3e-35	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0072538_17	UniRef90_R6MCS9	110.0	7.71e-29	N/A	N/A
eggNOG-mapper	UHGV-0072538_17	1519439.JPJG01000059_gene1910	175.0	0	N/A	N/A
PHROG	UHGV-0072538_18	phrog_1029	224.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0072538_18	1203606.HMPREF1526_01890	371.0	0	N/A	N/A
structural_annotation	UHGV-0072538_18	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-0072538_19	phrog_5781	64.2	2e-18	N/A	unknown function
UniRef90	UHGV-0072538_19	UniRef90_A0A810Q4L2	108.0	9.27e-28	N/A	N/A
eggNOG-mapper	UHGV-0072538_19	573061.Clocel_3558	77.0	5.99e-16	N/A	N/A
Pfam	UHGV-0072538_19	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0072538_19	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0072538_19	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0072538_20	phrog_36	58.0	2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0072538_20	UniRef90_UPI001C10AB33	121.0	1.31e-32	N/A	N/A
eggNOG-mapper	UHGV-0072538_20	428125.CLOLEP_01806	105.0	9.34e-27	N/A	N/A
Pfam	UHGV-0072538_20	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0072538_20	PF07374,TIGR01636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0072538_21	PF10922,MF_00839	N/A	N/A	N/A	N/A
KOfam	UHGV-0072538_22	K06909	393.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0072538_22	phrog_5653	148.0	5.74532e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0072538_22	UniRef90_A0A416S378	633.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0072538_22	33035.JPJF01000106_gene3136	595.0	0	Terminase small subunit	N/A
Pfam	UHGV-0072538_22	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0072538_22	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0072538_22	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0072538_22	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0072538_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0072538_22	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0072538_23	phrog_1233	95.2	7.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-0072538_23	1415774.U728_832	93.2	3.72e-23	N/A	N/A
structural_annotation	UHGV-0072538_23	PF13058	N/A	N/A	N/A	N/A
PHROG	UHGV-0072538_24	phrog_533	207.1	0	portal protein	head and packaging
UniRef90	UHGV-0072538_24	UniRef90_A0A173TY48	343.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0072538_24	33035.JPJF01000106_gene3135	323.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0072538_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0072538_25	phrog_581	242.6	0	minor head protein	head and packaging
UniRef90	UHGV-0072538_25	UniRef90_A0A3D4T830	341.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0072538_25	476272.RUMHYD_01761	223.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0072538_25	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0072538_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0072538_25	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0072538_26	phrog_194	45.8	0.0000000000013	head scaffolding protein	head and packaging
UniRef90	UHGV-0072538_26	UniRef90_UPI001C0EBA51	127.0	4.77e-33	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0072538_26	1539298.JO41_08210	62.4	0.00000000176	Phage minor structural protein GP20	N/A
Pfam	UHGV-0072538_26	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0072538_26	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0072538_27	phrog_267	54.6	0.0000000000000017	major head protein	head and packaging
eggNOG-mapper	UHGV-0072538_27	33035.JPJF01000030_gene2294	179.0	0	N/A	N/A
structural_annotation	UHGV-0072538_27	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0072538_28	phrog_541	67.8	1.6e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-0072538_28	476272.RUMHYD_01778	75.9	0.00000000000000283	N/A	N/A
PHROG	UHGV-0072538_29	phrog_3366	48.1	0.00000000000021	N/A	unknown function
structural_annotation	UHGV-0072538_29	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0072538_30	phrog_556	61.1	4.9e-18	minor head protein	head and packaging
UniRef90	UHGV-0072538_30	UniRef90_A0A1H7MNM8	122.0	1.24e-32	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0072538_30	476272.RUMHYD_01780	110.0	5.51e-29	N/A	N/A
Pfam	UHGV-0072538_30	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0072538_30	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0072538_31	phrog_3266	64.6	1.5e-18	tail completion	connector
eggNOG-mapper	UHGV-0072538_31	476272.RUMHYD_01781	116.0	6.17e-31	N/A	N/A
structural_annotation	UHGV-0072538_31	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0072538_32	phrog_3099	87.5	1.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0072538_32	693746.OBV_18150	223.0	0	N/A	N/A
structural_annotation	UHGV-0072538_32	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0072538_33	phrog_11299	101.4	8.7e-30	N/A	unknown function
eggNOG-mapper	UHGV-0072538_33	1449050.JNLE01000003_gene3883	64.7	0.0000000000393	N/A	N/A
structural_annotation	UHGV-0072538_33	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0072538_34	phrog_706	108.2	7.6e-32	N/A	unknown function
UniRef90	UHGV-0072538_34	UniRef90_UPI00164D7633	175.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0072538_34	693746.OBV_18170	168.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0072538_34	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0072538_34	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0072538_35	phrog_1535	133.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0072538_35	UniRef90_A0A810PX76	106.0	1.84e-20	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0072538_35	1449050.JNLE01000003_gene3881	135.0	1.75e-30	domain protein	N/A
COG	UHGV-0072538_35	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0072538_36	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0072538_37	phrog_6616	70.4	4.5e-21	tail protein	tail
structural_annotation	UHGV-0072538_37	PF13550,PF09931,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0072538_38	PF20622	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0072538	Yes	27,073	56	78	1
UHGV-0188891	No	26,355	57	76	1