vOTU vOTU-156101

vOTU: vOTU-156101

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-156101
Number of genomes	4
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01291 → vGENUS-03412 → vOTU-156101
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-1474702
Biosample ID	SAMN00715257
Genome length (bp)	26,476 bps
CheckV completeness	65.73% (Medium-quality)
CDS count	35
CDS density	95.14%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1424	Host agreement	85.39
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	21	Host agreement	90.48

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 65.73)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1474702_1	UniRef90_A0A374N9Y2	170.0	0	N/A	N/A
structural_annotation	UHGV-1474702_1	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1474702_2	phrog_1067	102.2	2e-30	minor head protein	head and packaging
UniRef90	UHGV-1474702_2	UniRef90_A0A1G5CPD2	150.0	5.4e-38	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-1474702_2	1462527.CCDM010000003_gene3730	62.8	0.000000114	gp58-like protein	N/A
Pfam	UHGV-1474702_2	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1474702_2	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1474702_2	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1474702_2	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1474702_3	phrog_33	82.6	8.2e-24	distal tail protein Dit	tail
UniRef90	UHGV-1474702_3	UniRef90_A0A1G5CPA2	132.0	9.3e-34	Phage-related protein	N/A
eggNOG-mapper	UHGV-1474702_3	1160721.RBI_I01575	88.2	4.97e-18	Phage tail protein	N/A
COG	UHGV-1474702_3	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1474702_3	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1474702_4	K20282	52.6	8.4e-16	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-1474702_4	phrog_5218	228.5	0	N/A	unknown function
UniRef90	UHGV-1474702_4	UniRef90_A0A412ULX0	1835.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1474702_4	588581.Cpap_1264	256.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1474702_4	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1474702_4	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1474702_4	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1474702_5	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1474702_6	phrog_88	73.9	2.3e-21	major tail protein	tail
eggNOG-mapper	UHGV-1474702_6	1321782.HMPREF1986_01362	65.1	0.000000000192	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1474702_6	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1474702_6	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-1474702_7	UniRef90_UPI000E5564A4	271.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1474702_7	1235792.C808_00089	50.1	0.00000847	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1474702_7	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1474702_7	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1474702_8	879305.HMPREF9290_0134	50.1	0.00000289	N/A	N/A
structural_annotation	UHGV-1474702_8	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-1474702_9	phrog_19734	71.8	8.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-1474702_9	86416.Clopa_0343	59.3	0.000000000888	N/A	N/A
NCBIFam	UHGV-1474702_9	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1474702_9	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1474702_10	phrog_749	53.9	0.0000000000000028	N/A	unknown function
UniRef90	UHGV-1474702_10	UniRef90_A0A1G5CMX8	107.0	2.14e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1474702_10	1211817.CCAT010000053_gene2133	59.3	0.000000000413	N/A	N/A
PHROG	UHGV-1474702_11	phrog_10	123.7	1.9e-36	major head protein	head and packaging
UniRef90	UHGV-1474702_11	UniRef90_UPI000E4BAA71	746.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1474702_11	610130.Closa_0744	320.0	0	Phage capsid family	N/A
Pfam	UHGV-1474702_11	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1474702_11	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1474702_11	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1474702_11	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1474702_12	K01358	135.9	4.2e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1474702_12	phrog_94	203.1	0	head maturation protease	head and packaging
UniRef90	UHGV-1474702_12	UniRef90_A0A412ULU1	456.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1474702_12	86416.Clopa_0340	173.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1474702_12	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1474702_12	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1474702_12	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1474702_13	phrog_12	94.1	1.1e-27	portal protein	head and packaging
UniRef90	UHGV-1474702_13	UniRef90_A0A412ULV9	710.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1474702_13	1415774.U728_1254	265.0	0	Phage portal protein	N/A
Pfam	UHGV-1474702_13	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1474702_13	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1474702_13	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1474702_13	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1474702_14	phrog_9	294.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1474702_14	UniRef90_A0A412UM03	1098.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1474702_14	86416.Clopa_0337	634.0	0	Phage Terminase	N/A
Pfam	UHGV-1474702_14	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1474702_14	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1474702_14	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1474702_14	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1474702_15	phrog_5110	82.0	5e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1474702_15	UniRef90_A0A1M5U1D5	114.0	4.18e-31	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1474702_15	1211817.CCAT010000053_gene2128	100.0	2.21e-26	N/A	N/A
Pfam	UHGV-1474702_15	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1474702_15	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1474702_16	phrog_119	70.5	2.4e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1474702_16	UniRef90_A0A412ULY9	219.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1474702_16	1158607.UAU_01026	101.0	4.13e-26	HNH endonuclease	N/A
Pfam	UHGV-1474702_16	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1474702_16	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1474702_17	PF02796,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-1474702_20	K18830	53.7	0.0000000000000052	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1474702_20	phrog_8	61.6	1.9e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1474702_20	UniRef90_A0A374N9T4	108.0	1.04e-29	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1474702_20	935845.JADQ01000015_gene3206	79.0	6.44e-18	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1474702_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1474702_20	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1474702_20	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1474702_22	PF19824,MF_01506	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1474702_24	PF02559,MF_00667,TIGR02861	N/A	N/A	N/A	N/A
PHROG	UHGV-1474702_25	phrog_140	90.5	2.1e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1474702_25	UniRef90_A0A2N0UXU6	262.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1474702_25	411462.DORLON_00806	207.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1474702_25	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1474702_25	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1474702_25	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1474702_26	K07505	406.7	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1474702_26	phrog_2597	1174.1	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1474702_26	UniRef90_A0A2N0UXP7	1431.0	0	Regulatory protein RepA	N/A
eggNOG-mapper	UHGV-1474702_26	394503.Ccel_3304	966.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1474702_26	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1474702_26	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1474702_26	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1474702_26	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-1474702_27	K17677	362.3	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1474702_27	phrog_16	295.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1474702_27	UniRef90_A0A412ULZ3	1044.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-1474702_27	1235798.C817_03499	841.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-1474702_27	mREase_IV_00005	131.3	8.5e-39	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1474702_27	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1474702_27	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1474702_27	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1474702_27	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1474702_28	phrog_2698	177.3	0	N/A	unknown function
UniRef90	UHGV-1474702_28	UniRef90_UPI000F54335B	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-1474702_28	742723.HMPREF9477_00927	139.0	1.05e-39	N/A	N/A
structural_annotation	UHGV-1474702_28	PF17426,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-1474702_29	phrog_124	264.5	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1474702_29	UniRef90_A0A2N0UXR5	696.0	0	Phage nucleotide-binding protein	N/A
eggNOG-mapper	UHGV-1474702_29	411462.DORLON_00811	434.0	0	AAA domain	N/A
Pfam	UHGV-1474702_29	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1474702_29	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-1474702_31	K03546	58.1	8.8e-17	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1474702_31	phrog_1499	481.6	0	N/A	unknown function
UniRef90	UHGV-1474702_31	UniRef90_A0A2N0UXU2	753.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-1474702_31	645991.Sgly_0320	503.0	0	domain protein	N/A
Pfam	UHGV-1474702_31	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1474702_31	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1474702_31	TIGR03185,COG5293	N/A	N/A	N/A	N/A
PHROG	UHGV-1474702_35	phrog_6058	42.2	0.0000000000093	N/A	unknown function
structural_annotation	UHGV-1474702_35	NF033787	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1474702	Yes	26,476	42	66	1
UHGV-0187320	No	26,467	42	66	1
UHGV-0121801	No	26,443	42	66	1
UHGV-1433262	No	26,443	42	66	1