vOTU vOTU-156222

vOTU: vOTU-156222

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-156222
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00150 → vGENUS-08156 → vOTU-156222
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1899761
Biosample ID	N/A
Genome length (bp)	18,047 bps
CheckV completeness	53.30% (Medium-quality)
CDS count	22
CDS density	90.91%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	623	Host agreement	76.4
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis	Total connections	7	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 53.3)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1899761_1	768704.Desmer_3398	99.8	3.1e-24	N/A	N/A
UniRef90	UHGV-1899761_2	UniRef90_A0A173T6Z2	546.0	0	TraX protein	N/A
eggNOG-mapper	UHGV-1899761_2	768704.Desmer_3397	214.0	0	TraX protein	N/A
Pfam	UHGV-1899761_2	PF05857	N/A	N/A	TraX protein	TraX
KOfam	UHGV-1899761_3	K06400	383.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1899761_3	phrog_95	360.2	0	integrase	integration and excision
UniRef90	UHGV-1899761_3	UniRef90_A0A1Y4KYS6	952.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-1899761_3	411459.RUMOBE_02892	1050.0	0	N/A	N/A
Pfam	UHGV-1899761_3	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1899761_3	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1899761_3	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1899761_3	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1899761_3	PF07508,PF00239,PF18822,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1899761_4	phrog_199	84.3	1.4e-24	holin	lysis
UniRef90	UHGV-1899761_4	UniRef90_A0A7C9KZL1	251.0	0	Holin	N/A
eggNOG-mapper	UHGV-1899761_4	97139.C824_03357	186.0	0	TIGRFAM toxin secretion phage lysis holin	N/A
Pfam	UHGV-1899761_4	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1899761_4	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1899761_4	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1899761_4	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1899761_5	phrog_134	52.1	0.0000000000000094	N/A	unknown function
UniRef90	UHGV-1899761_5	UniRef90_A0A7C9L008	98.2	4.5e-26	XkdX family protein	N/A
Pfam	UHGV-1899761_5	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-1899761_5	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-1899761_5	PF09693,TIGR01669	N/A	N/A	N/A	N/A
KOfam	UHGV-1899761_7	K00986	110.9	1.3e-32	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-1899761_7	phrog_1423	199.0	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1899761_7	UniRef90_A0A1C5MA91	410.0	0	Retron-type reverse transcriptase	N/A
eggNOG-mapper	UHGV-1899761_7	1160721.RBI_I01568	285.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-1899761_7	icity0040	87.9	1.8e-25	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-1899761_7	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-1899761_7	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1899761_7	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
UniRef90	UHGV-1899761_8	UniRef90_UPI00189E384C	82.0	2.86e-17	four helix bundle protein	N/A
eggNOG-mapper	UHGV-1899761_8	1226322.HMPREF1545_04032	57.4	0.0000000194	N/A	N/A
structural_annotation	UHGV-1899761_8	PF05635,NF008911	N/A	N/A	N/A	N/A
PHROG	UHGV-1899761_9	phrog_24060	57.0	8.4e-17	N/A	unknown function
UniRef90	UHGV-1899761_9	UniRef90_A0A7C9H8W0	664.0	0	N/A	N/A
eggNOG-mapper	UHGV-1899761_9	1235797.C816_02837	71.6	0.0000000000885	N/A	N/A
Pfam	UHGV-1899761_9	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1899761_9	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1899761_10	phrog_19280	98.7	2.6e-30	N/A	unknown function
UniRef90	UHGV-1899761_10	UniRef90_A0A7C9H3D3	269.0	0	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1899761_10	1160721.RBI_I01572	84.7	1.05e-16	N/A	N/A
structural_annotation	UHGV-1899761_10	PF10651,TIGR02781,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-1899761_12	phrog_1067	412.4	0	minor head protein	head and packaging
UniRef90	UHGV-1899761_12	UniRef90_A0A7C9HAK5	1280.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1899761_12	1160721.RBI_I01574	439.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1899761_12	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1899761_12	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1899761_12	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1899761_12	PF14594,PF13884,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1899761_13	phrog_33	81.4	1.7e-23	distal tail protein Dit	tail
UniRef90	UHGV-1899761_13	UniRef90_UPI00164BA811	155.0	6.05361e-43	phage tail family protein	N/A
eggNOG-mapper	UHGV-1899761_13	1160721.RBI_I01575	157.0	1.96182e-44	Phage tail protein	N/A
COG	UHGV-1899761_13	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1899761_13	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1899761_14	phrog_1272	305.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1899761_14	UniRef90_A0A7C9H3E2	966.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1899761_14	411468.CLOSCI_00540	396.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1899761_14	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1899761_14	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1899761_14	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1899761_15	411468.CLOSCI_00541	68.2	0.00000000000000999	N/A	N/A
PHROG	UHGV-1899761_16	phrog_29863	42.2	0.000000000014	N/A	unknown function
eggNOG-mapper	UHGV-1899761_16	411468.CLOSCI_00542	95.9	3e-24	N/A	N/A
structural_annotation	UHGV-1899761_16	PF17388	N/A	N/A	N/A	N/A
PHROG	UHGV-1899761_17	phrog_2175	83.1	3.7e-24	protein with Ig domain	other
eggNOG-mapper	UHGV-1899761_17	457421.CBFG_03714	219.0	0	N/A	N/A
structural_annotation	UHGV-1899761_17	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1899761_18	411468.CLOSCI_00544	94.0	2.5e-23	N/A	N/A
structural_annotation	UHGV-1899761_18	PF20765	N/A	N/A	N/A	N/A
UniRef90	UHGV-1899761_19	UniRef90_A0A7C9LD40	219.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1899761_19	411468.CLOSCI_00545	105.0	1.24e-27	COG NOG18351 non supervised orthologous group	N/A
Pfam	UHGV-1899761_19	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1899761_19	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1899761_20	phrog_1951	72.4	5.1e-21	head-tail adaptor	connector
UniRef90	UHGV-1899761_20	UniRef90_UPI00189EBA11	70.9	0.0000000000000368	phage head closure protein	N/A
eggNOG-mapper	UHGV-1899761_20	491915.Aflv_0668	49.3	0.00000241	head-tail adaptor	N/A
COG	UHGV-1899761_20	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1899761_20	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1899761_21	phrog_5223	84.2	8.4e-25	neck protein	connector
UniRef90	UHGV-1899761_21	UniRef90_A0A7C9LAV1	190.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1899761_21	397290.C810_00423	91.7	9.45e-23	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1899761	Yes	18,047	42	53	1