vOTU vOTU-156794

vOTU: vOTU-156794

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-156794
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vOTU-156794
Host lineage
Host range breadth
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0046752
Biosample ID	N/A
Genome length (bp)	21,548 bps
CheckV completeness	53.90% (Medium-quality)
CDS count	50
CDS density	89.87%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 53.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0046752_1	K01358	75.2	1.2e-21	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0046752_1	phrog_94	147.2	1.79366e-43	head maturation protease	head and packaging
UniRef90	UHGV-0046752_1	UniRef90_UPI0005B29610	261.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0046752_1	1347392.CCEZ01000060_gene3254	261.0	0	serine-type endopeptidase activity	N/A
Pfam	UHGV-0046752_1	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0046752_1	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
PHROG	UHGV-0046752_2	phrog_12	128.8	9e-39	portal protein	head and packaging
UniRef90	UHGV-0046752_2	UniRef90_UPI0005B2D9A1	773.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0046752_2	1347392.CCEZ01000060_gene3255	773.0	0	Phage portal protein	N/A
Pfam	UHGV-0046752_2	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0046752_2	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0046752_2	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0046752_2	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0046752_3	phrog_9	315.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0046752_3	UniRef90_UPI0005B2BCD0	1120.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0046752_3	1347392.CCEZ01000060_gene3256	1120.0	0	Phage Terminase	N/A
Pfam	UHGV-0046752_3	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0046752_3	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0046752_3	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0046752_3	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0046752_4	phrog_5110	117.3	5.9e-35	terminase small subunit	head and packaging
UniRef90	UHGV-0046752_4	UniRef90_UPI0005B29F36	207.0	0	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0046752_4	1347392.CCEZ01000060_gene3257	207.0	0	N/A	N/A
Pfam	UHGV-0046752_4	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0046752_4	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0046752_5	K07451	55.7	0.0000000000000012	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0046752_5	phrog_119	91.7	8.9e-27	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0046752_5	UniRef90_UPI0005B2B668	228.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0046752_5	1347392.CCEZ01000060_gene3258	228.0	0	HNH endonuclease	N/A
Pfam	UHGV-0046752_5	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0046752_5	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0046752_9	K07741	128.8	1e-37	antB; anti-repressor protein	N/A
PHROG	UHGV-0046752_9	phrog_5817	136.9	1.7e-40	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0046752_9	UniRef90_UPI0006786CAE	442.0	0	antA/AntB antirepressor family protein	N/A
eggNOG-mapper	UHGV-0046752_9	1347392.CCEZ01000060_gene3263	442.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-0046752_9	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
COG	UHGV-0046752_9	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
AcrCatalog	UHGV-0046752_12	cluster_65164	29.6	0.000299	NA	N/A
PHROG	UHGV-0046752_14	phrog_10157	92.7	4.1e-27	N/A	unknown function
UniRef90	UHGV-0046752_14	UniRef90_A0A1H3F2X8	187.0	0	Sigma-70, region 4	N/A
eggNOG-mapper	UHGV-0046752_14	1395513.P343_08040	52.0	0.00000206	N/A	N/A
PHROG	UHGV-0046752_15	phrog_1389	73.0	4.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0046752_15	1347392.CCEZ01000060_gene3269	202.0	0	N/A	N/A
structural_annotation	UHGV-0046752_15	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0046752_16	1347392.CCEZ01000060_gene3270	155.0	0	N/A	N/A
PHROG	UHGV-0046752_18	phrog_7566	50.0	0.000000000000057	N/A	unknown function
UniRef90	UHGV-0046752_18	UniRef90_UPI0005B2E593	217.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0046752_18	1347392.CCEZ01000060_gene3272	217.0	0	N/A	N/A
Pfam	UHGV-0046752_18	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-0046752_19	phrog_173	129.9	1.8e-38	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0046752_19	UniRef90_UPI0005B26F4B	325.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0046752_19	1347392.CCEZ01000060_gene3273	325.0	0	Protein conserved in bacteria	N/A
Pfam	UHGV-0046752_19	PF08761	N/A	N/A	dUTPase	dUTPase_2
COG	UHGV-0046752_19	COG4508	N/A	N/A	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	N/A
structural_annotation	UHGV-0046752_19	PF08761,COG4508	N/A	N/A	N/A	N/A
PHROG	UHGV-0046752_23	phrog_98	100.8	8.4e-30	N/A	unknown function
UniRef90	UHGV-0046752_23	UniRef90_UPI0005B2E0CF	278.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0046752_23	1347392.CCEZ01000060_gene3277	278.0	0	YopX protein	N/A
Pfam	UHGV-0046752_23	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0046752_23	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0046752_23	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0046752_28	phrog_244	70.2	4.5e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0046752_28	1347392.CCEZ01000060_gene3282	223.0	0	N/A	N/A
structural_annotation	UHGV-0046752_28	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0046752_32	K03111	135.0	9.5e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0046752_32	phrog_44	132.1	4.1e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0046752_32	UniRef90_UPI0005B2900E	268.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0046752_32	1347392.CCEZ01000060_gene3285	268.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0046752_32	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0046752_32	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0046752_32	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0046752_32	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0046752_32	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0046752_33	phrog_1485	108.8	6.4e-32	N/A	unknown function
UniRef90	UHGV-0046752_33	UniRef90_UPI0005B2818F	186.0	0	N/A	N/A
eggNOG-mapper	UHGV-0046752_33	1347392.CCEZ01000060_gene3286	186.0	0	N/A	N/A
Pfam	UHGV-0046752_33	PF07659	N/A	N/A	Nucleotide modification associated domain 1	DUF1599
PHROG	UHGV-0046752_35	phrog_323	90.1	3.1e-26	endonuclease	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0046752_35	PF06827	N/A	N/A	Zinc finger found in FPG and IleRS	zf-FPG_IleRS
KOfam	UHGV-0046752_36	K02314	474.3	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0046752_36	phrog_19	328.4	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0046752_36	UniRef90_UPI0005B25F09	808.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0046752_36	1347392.CCEZ01000060_gene3289	808.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0046752_36	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0046752_36	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
NCBIFam	UHGV-0046752_36	TIGR00665.1	N/A	N/A	replicative DNA helicase	N/A
COG	UHGV-0046752_36	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0046752_36	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0046752_37	phrog_11718	82.0	4.3e-24	N/A	unknown function
UniRef90	UHGV-0046752_37	UniRef90_UPI001CFAD681	138.0	6.49e-36	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0046752_37	1347392.CCEZ01000060_gene3290	432.0	0	DnaD domain protein	N/A
COG	UHGV-0046752_37	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
eggNOG-mapper	UHGV-0046752_38	1347392.CCEZ01000060_gene3291	328.0	0	N/A	N/A
structural_annotation	UHGV-0046752_38	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0046752_39	phrog_253	166.1	0	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0046752_39	UniRef90_UPI0005B2B6DE	209.0	0	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0046752_39	1347392.CCEZ01000060_gene3292	209.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-0046752_39	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0046752_39	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0046752_44	phrog_7338	43.9	0.0000000000031	N/A	unknown function
UniRef90	UHGV-0046752_44	UniRef90_UPI0006784C4B	204.0	0	excisionase family DNA-binding protein	N/A
eggNOG-mapper	UHGV-0046752_44	580331.Thit_1409	51.2	0.000000454	TIGRFAM DNA binding domain	N/A
Pfam	UHGV-0046752_44	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0046752_44	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
PHROG	UHGV-0046752_46	phrog_373	112.0	5.2e-33	anti-repressor	transcription regulation
UniRef90	UHGV-0046752_46	UniRef90_UPI0006789D16	495.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0046752_46	1347392.CCEZ01000060_gene3299	495.0	0	Phage regulatory protein	N/A
Pfam	UHGV-0046752_46	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
COG	UHGV-0046752_46	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0046752_46	PF10552,PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-0046752_47	K07729	42.7	0.000000000013	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0046752_47	UniRef90_UPI0005B2AD01	152.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0046752_47	1347392.CCEZ01000060_gene3300	152.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0046752_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-0046752_48	K22299	66.5	6.1e-19	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0046752_48	phrog_8	89.3	6.1e-26	transcriptional regulator	transcription regulation
UniRef90	UHGV-0046752_48	UniRef90_UPI001C9C99D4	236.0	0	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0046752_48	1347392.CCEZ01000060_gene3301	236.0	0	transcriptional regulator	N/A
PADLOC	UHGV-0046752_48	retron_type_VI_hth_cluster2_1	51.8	0.000000000000019	N/A	Retron
Pfam	UHGV-0046752_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0046752_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0046752_48	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0046752_49	phrog_1914	76.0	1.8e-22	N/A	unknown function
UniRef90	UHGV-0046752_49	UniRef90_UPI000678A9CA	404.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0046752_49	1347392.CCEZ01000060_gene3302	404.0	0	N/A	N/A
Pfam	UHGV-0046752_49	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0046752_49	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
KOfam	UHGV-0046752_50	K14059	306.0	0	int; integrase	N/A
PHROG	UHGV-0046752_50	phrog_1	240.5	0	integrase	integration and excision
UniRef90	UHGV-0046752_50	UniRef90_UPI0005B2D053	746.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0046752_50	1347392.CCEZ01000060_gene3303	746.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0046752_50	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0046752_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0046752_50	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0046752_50	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0046752	Yes	21,548	31	54	1