vOTU vOTU-156981

vOTU: vOTU-156981

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-156981
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01133 → vGENUS-01313 → vOTU-156981
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0008317
Biosample ID	N/A
Genome length (bp)	24,727 bps
CheckV completeness	74.83% (Medium-quality)
CDS count	35
CDS density	91.95%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp003150355	Total connections	9	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	14	Host agreement	78.57

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 74.83)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0008317_1	UniRef90_A0A316NKB4	127.0	2.54e-37	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0008317_1	394503.Ccel_1847	80.5	2.98e-19	Helix-turn-helix domain	N/A
Pfam	UHGV-0008317_1	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0008317_1	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0008317_1	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0008317_1	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0008317_2	K14059	301.0	0	int; integrase	N/A
PHROG	UHGV-0008317_2	phrog_1	226.3	0	integrase	integration and excision
UniRef90	UHGV-0008317_2	UniRef90_A0A3D3Y528	754.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0008317_2	742738.HMPREF9460_01068	500.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0008317_2	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0008317_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0008317_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0008317_2	PF00589,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0008317_3	K07273	193.6	0	acm; lysozyme	N/A
PHROG	UHGV-0008317_3	phrog_291	118.1	7.1e-35	endolysin	lysis
UniRef90	UHGV-0008317_3	UniRef90_A0A316NNJ5	580.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0008317_3	552398.HMPREF0866_01858	219.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0008317_3	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0008317_3	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
PHROG	UHGV-0008317_4	phrog_199	67.1	2.1e-19	holin	lysis
UniRef90	UHGV-0008317_4	UniRef90_A0A3C0NPD5	184.0	0	Holin	N/A
eggNOG-mapper	UHGV-0008317_4	742738.HMPREF9460_00365	150.0	2.8026e-44	Bacteriophage holin family	N/A
Pfam	UHGV-0008317_4	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0008317_4	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0008317_4	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0008317_4	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0008317_5	phrog_14030	160.4	0	N/A	unknown function
UniRef90	UHGV-0008317_5	UniRef90_A0A316NTC6	220.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0008317_5	641107.CDLVIII_3774	193.0	0	Bacteriophage peptidoglycan hydrolase	N/A
Pfam	UHGV-0008317_5	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0008317_5	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0008317_5	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0008317_5	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0008317_6	phrog_355	62.6	5.6e-18	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008317_6	UniRef90_A0A396KGT7	173.0	0	N/A	N/A
eggNOG-mapper	UHGV-0008317_6	97138.C820_00250	128.0	3.37e-37	N/A	N/A
Pfam	UHGV-0008317_6	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0008317_6	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0008317_12	phrog_19280	48.7	0.000000000000044	N/A	unknown function
eggNOG-mapper	UHGV-0008317_12	1160721.RBI_I01572	75.9	0.000000000000618	N/A	N/A
structural_annotation	UHGV-0008317_12	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0008317_15	phrog_1067	320.0	0	minor head protein	head and packaging
UniRef90	UHGV-0008317_15	UniRef90_A0A1C6H6B4	483.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0008317_15	1123263.AUKY01000068_gene489	342.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0008317_15	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0008317_15	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0008317_15	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0008317_15	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0008317_16	phrog_33	81.9	1.3e-23	distal tail protein Dit	tail
UniRef90	UHGV-0008317_16	UniRef90_A0A173Z1X4	180.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0008317_16	536233.CLO_0897	75.9	0.0000000000000828	tail component	N/A
Pfam	UHGV-0008317_16	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0008317_16	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0008317_16	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0008317_17	phrog_1272	92.7	1.1e-35	tail length tape measure protein	tail
UniRef90	UHGV-0008317_17	UniRef90_A0A1Y4R6K5	199.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0008317_17	458233.MCCL_1517	184.0	1.4013e-45	Phage tail tape measure protein	N/A
COG	UHGV-0008317_17	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0008317_17	COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0008317_20	phrog_88	82.6	4.4e-24	major tail protein	tail
UniRef90	UHGV-0008317_20	UniRef90_UPI0018771F27	137.0	4.74e-37	phage tail protein	N/A
eggNOG-mapper	UHGV-0008317_20	33035.JPJF01000039_gene278	81.3	3.05e-16	N/A	N/A
structural_annotation	UHGV-0008317_20	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0008317_21	phrog_5	41.0	0.000000000026	tail completion or Neck1 protein	connector
UniRef90	UHGV-0008317_21	UniRef90_A0A1C6FG30	142.0	3.59e-40	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0008317_21	908340.HMPREF9406_2573	131.0	1.23e-36	N/A	N/A
structural_annotation	UHGV-0008317_21	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0008317_22	1232446.BAIE02000002_gene829	91.7	1.31e-22	N/A	N/A
structural_annotation	UHGV-0008317_22	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0008317_23	phrog_19734	90.4	1.8e-26	N/A	unknown function
UniRef90	UHGV-0008317_23	UniRef90_A0A3E3E563	81.6	1.02e-17	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0008317_23	1235798.C817_04587	91.7	2.05e-22	N/A	N/A
structural_annotation	UHGV-0008317_23	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0008317_24	phrog_2550	69.8	2.2e-20	N/A	unknown function
UniRef90	UHGV-0008317_24	UniRef90_UPI0008717716	91.7	2.94e-22	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0008317_24	1226322.HMPREF1545_00117	81.3	6.4e-19	N/A	N/A
structural_annotation	UHGV-0008317_24	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0008317_25	phrog_10	200.1	0	major head protein	head and packaging
UniRef90	UHGV-0008317_25	UniRef90_A0A1C6H720	644.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0008317_25	1226322.HMPREF1545_00116	592.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0008317_25	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0008317_25	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0008317_25	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0008317_25	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0008317_26	K06904	150.5	1.4013e-44	N/A	N/A
PHROG	UHGV-0008317_26	phrog_80	176.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0008317_26	UniRef90_U2SBX0	233.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-0008317_26	1226322.HMPREF1545_00115	233.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0008317_26	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0008317_26	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0008317_26	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0008317_26	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0008317_27	phrog_12	176.3	0	portal protein	head and packaging
UniRef90	UHGV-0008317_27	UniRef90_A0A0D8IVL0	530.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0008317_27	1226322.HMPREF1545_00114	457.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0008317_27	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0008317_27	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0008317_27	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0008317_27	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0008317_28	phrog_9	286.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0008317_28	UniRef90_A0A2V2GQ67	957.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0008317_28	1226322.HMPREF1545_00113	850.0	0	Phage Terminase	N/A
Pfam	UHGV-0008317_28	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0008317_28	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0008317_28	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0008317_28	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0008317_29	phrog_361	71.7	1.1e-20	terminase small subunit	head and packaging
UniRef90	UHGV-0008317_29	UniRef90_UPI0004135207	62.8	0.00000000033	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0008317_29	1033744.CAEL01000029_gene1286	72.4	0.00000000000000954	Phage terminase, small subunit	N/A
Pfam	UHGV-0008317_29	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0008317_29	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0008317_30	phrog_119	60.1	3.7e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0008317_30	UniRef90_A0A0D8IV26	84.3	5.52e-20	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0008317_30	1415774.U728_1257	63.5	0.00000000000282	HNH nucleases	N/A
Pfam	UHGV-0008317_30	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0008317_30	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0008317_31	742738.HMPREF9460_02503	89.4	2.32e-21	N/A	N/A
PHROG	UHGV-0008317_33	phrog_3584	158.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0008317_33	1226322.HMPREF1545_03841	248.0	0	N/A	N/A
structural_annotation	UHGV-0008317_33	PF01446,NF041486	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0008317	Yes	24,727	54	75	1