vOTU vOTU-157365

vOTU: vOTU-157365

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-157365
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00162 → vSUBFAM-01610 → vGENUS-01668 → vOTU-157365
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Selenomonadales → Selenomonadaceae → Mitsuokella
Host range breadth	Genus
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0356497
Biosample ID	SAMEA4588098
Genome length (bp)	38,210 bps
CheckV completeness	65.67% (Medium-quality)
CDS count	52
CDS density	92.04%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Selenomonadales → Selenomonadaceae → Mitsuokella	Total connections	77	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 65.67)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0356497_1	K06400	303.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0356497_1	phrog_95	302.6	0	integrase	integration and excision
UniRef90	UHGV-0356497_1	UniRef90_UPI0004849866	472.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0356497_1	1200557.JHWV01000001_gene302	472.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0356497_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0356497_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0356497_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0356497_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0356497_1	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0356497_3	UniRef90_A0A414NZU9	211.0	0	Zinc-ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-0356497_3	1410618.JNKI01000008_gene522	68.2	0.000000000096	N/A	N/A
Pfam	UHGV-0356497_3	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
KOfam	UHGV-0356497_4	K22300	68.9	1e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0356497_4	phrog_4	51.1	0.000000000000034	transcriptional repressor	transcription regulation
UniRef90	UHGV-0356497_4	UniRef90_UPI001D032175	99.8	1.98e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0356497_4	1123511.KB905857_gene1687	83.2	8.74e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-0356497_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0356497_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0356497_4	PF12844,MF_02017,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0356497_12	phrog_3584	117.3	1.1e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0356497_12	1392502.JNIO01000002_gene51	297.0	0	N/A	N/A
structural_annotation	UHGV-0356497_12	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0356497_13	K03700	60.3	3.4e-17	recU; recombination protein U	N/A
PHROG	UHGV-0356497_13	phrog_843	122.5	2.3e-36	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0356497_13	UniRef90_A0A1H0P4X6	205.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0356497_13	1392502.JNIO01000008_gene1290	203.0	0	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0356497_13	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0356497_13	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0356497_13	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
KOfam	UHGV-0356497_14	K03496	210.1	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0356497_14	phrog_164	166.8	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0356497_14	UniRef90_A0A1H0P4D7	366.0	0	Chromosome partitioning protein	N/A
eggNOG-mapper	UHGV-0356497_14	1280706.AUJE01000010_gene635	358.0	0	AAA domain	N/A
Pfam	UHGV-0356497_14	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0356497_14	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0356497_14	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0356497_16	K03497	91.5	1.5e-26	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0356497_16	phrog_15982	149.9	1.54143e-44	N/A	unknown function
UniRef90	UHGV-0356497_16	UniRef90_UPI0004238EA6	252.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0356497_16	1280706.AUJE01000010_gene636	252.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0356497_16	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0356497_16	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0356497_16	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0356497_22	K03111	152.9	2.8026e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0356497_22	phrog_44	149.8	1.26117e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0356497_22	UniRef90_I0GSV3	199.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0356497_22	927704.SELR_21320	199.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0356497_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0356497_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0356497_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0356497_22	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0356497_22	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0356497_23	K06940	52.5	0.000000000000011	N/A	N/A
PHROG	UHGV-0356497_23	phrog_32498	106.7	1.5e-31	N/A	unknown function
UniRef90	UHGV-0356497_23	UniRef90_A0A7G5N1F4	107.0	3.64e-27	YkgJ family cysteine cluster protein	N/A
eggNOG-mapper	UHGV-0356497_23	397290.C810_01479	102.0	3.17e-26	Putative zinc- or iron-chelating domain	N/A
Pfam	UHGV-0356497_23	PF03692	N/A	N/A	Putative zinc- or iron-chelating domain	CxxCxxCC
KOfam	UHGV-0356497_26	K06940	53.3	0.000000000000006	N/A	N/A
PHROG	UHGV-0356497_26	phrog_32498	109.4	2e-32	N/A	unknown function
UniRef90	UHGV-0356497_26	UniRef90_A0A6N2TW79	108.0	1.49e-27	Flagellin N-methylase	N/A
eggNOG-mapper	UHGV-0356497_26	397290.C810_01479	107.0	3.43e-28	Putative zinc- or iron-chelating domain	N/A
Pfam	UHGV-0356497_26	PF03692	N/A	N/A	Putative zinc- or iron-chelating domain	CxxCxxCC
PHROG	UHGV-0356497_30	phrog_36	63.2	5.1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0356497_30	UniRef90_UPI000DA60FA2	165.0	0	N/A	N/A
eggNOG-mapper	UHGV-0356497_30	1392502.JNIO01000008_gene1304	187.0	0	DNA-templated transcription, initiation	N/A
COG	UHGV-0356497_30	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0356497_30	PF06530,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0356497_32	K07474	84.7	1.9e-24	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0356497_32	phrog_2606	157.0	0	terminase small subunit	head and packaging
UniRef90	UHGV-0356497_32	UniRef90_C4Z826	148.0	6.39001e-40	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0356497_32	1415774.U728_838	119.0	2.79e-29	terminase, small subunit	N/A
Pfam	UHGV-0356497_32	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
Pfam	UHGV-0356497_32	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0356497_32	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0356497_32	PF03592,PF06056,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0356497_33	phrog_4581	100.2	1.9e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0356497_33	UniRef90_UPI001D0121F4	264.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0356497_33	927704.SELR_18240	263.0	0	adenylate kinase activity	N/A
Pfam	UHGV-0356497_33	PF01844	N/A	N/A	HNH endonuclease	HNH
Pfam	UHGV-0356497_33	PF13671	N/A	N/A	AAA domain	AAA_33
COG	UHGV-0356497_33	COG0563	N/A	N/A	Adenylate kinase or related kinase	N/A
structural_annotation	UHGV-0356497_33	PF13671,MF_03171,NF005251,NF008448,COG4639	N/A	N/A	N/A	N/A
PHROG	UHGV-0356497_34	phrog_1066	52.9	0.000000000000006	N/A	unknown function
UniRef90	UHGV-0356497_34	UniRef90_A0A316MDS1	104.0	9.21e-27	Zinc-binding protein	N/A
eggNOG-mapper	UHGV-0356497_34	1536774.H70357_10610	50.8	0.00000154	N/A	N/A
structural_annotation	UHGV-0356497_34	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0356497_35	phrog_9	295.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0356497_35	UniRef90_I0GRZ3	765.0	0	Putative phage terminase	N/A
eggNOG-mapper	UHGV-0356497_35	927704.SELR_18220	765.0	0	Phage Terminase	N/A
Pfam	UHGV-0356497_35	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0356497_35	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0356497_35	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0356497_35	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0356497_36	phrog_29023	158.7	0	N/A	unknown function
UniRef90	UHGV-0356497_36	UniRef90_I0GRZ2	536.0	0	Putative phage portal protein	N/A
eggNOG-mapper	UHGV-0356497_36	927704.SELR_18210	536.0	0	Phage portal protein	N/A
Pfam	UHGV-0356497_36	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0356497_36	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0356497_36	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0356497_37	K06904	130.0	2.3e-38	N/A	N/A
PHROG	UHGV-0356497_37	phrog_80	147.1	1.4013e-43	head maturation protease	head and packaging
UniRef90	UHGV-0356497_37	UniRef90_I0GRZ1	266.0	0	Putative phage prohead protease	N/A
eggNOG-mapper	UHGV-0356497_37	927704.SELR_18200	266.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0356497_37	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0356497_37	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0356497_37	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0356497_37	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0356497_38	phrog_10	126.3	3.1e-37	major head protein	head and packaging
UniRef90	UHGV-0356497_38	UniRef90_A0A328L511	336.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0356497_38	1123288.SOV_2c03610	334.0	0	Phage capsid family	N/A
Pfam	UHGV-0356497_38	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0356497_38	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0356497_38	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0356497_40	927704.SELR_18180	50.4	0.000000897	N/A	N/A
NCBIFam	UHGV-0356497_40	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0356497_40	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0356497_41	phrog_25	42.0	0.000000000015	head closure Hc1	connector
UniRef90	UHGV-0356497_41	UniRef90_UPI0008DA6A88	67.4	0.00000000000232	phage head closure protein	N/A
eggNOG-mapper	UHGV-0356497_41	910314.HMPREF9220_1092	58.5	0.00000000111	Phage head-tail joining protein	N/A
Pfam	UHGV-0356497_41	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0356497_41	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0356497_42	phrog_5	64.5	2.4e-18	tail completion or Neck1 protein	connector
UniRef90	UHGV-0356497_42	UniRef90_UPI0018C66872	122.0	8.53e-33	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0356497_42	861450.HMPREF0080_02051	83.2	2.44e-18	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0356497_42	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
COG	UHGV-0356497_42	COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0356497_42	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0356497_43	phrog_176	43.5	0.0000000000000036	tail terminator	connector
UniRef90	UHGV-0356497_43	UniRef90_UPI0008DA5300	100.0	2.85e-24	N/A	N/A
eggNOG-mapper	UHGV-0356497_43	679201.HMPREF9334_00326	87.0	7.42e-20	N/A	N/A
structural_annotation	UHGV-0356497_43	PF16807,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0356497_44	phrog_1407	116.0	2e-34	major tail protein	tail
UniRef90	UHGV-0356497_44	UniRef90_UPI0018C4BAA8	164.0	0	phage tail tube protein	N/A
eggNOG-mapper	UHGV-0356497_44	679201.HMPREF9334_00327	168.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0356497_44	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
COG	UHGV-0356497_44	COG5437	N/A	N/A	Phage tail protein, TP901-1 family	N/A
structural_annotation	UHGV-0356497_44	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0356497_45	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0356497_46	phrog_7377	58.3	1.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-0356497_46	592028.GCWU000321_01385	87.0	5.13e-21	N/A	N/A
PHROG	UHGV-0356497_47	phrog_18863	155.9	0	N/A	unknown function
UniRef90	UHGV-0356497_47	UniRef90_A0A414NZU2	1228.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0356497_47	679201.HMPREF9334_00330	544.0	0	tape measure	N/A
Pfam	UHGV-0356497_47	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
Pfam	UHGV-0356497_47	PF09718	N/A	N/A	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
COG	UHGV-0356497_47	COG4805	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0356497_47	TIGR01760	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0356497_48	679201.HMPREF9334_00331	136.0	7.80001e-40	N/A	N/A
structural_annotation	UHGV-0356497_48	PF05939,TIGR02217,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0356497_49	phrog_18	61.5	1.1e-17	minor tail protein	tail
UniRef90	UHGV-0356497_49	UniRef90_A0A4R3K4E0	232.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0356497_49	679201.HMPREF9334_00332	303.0	0	N/A	N/A
Pfam	UHGV-0356497_49	PF05100	N/A	N/A	Phage minor tail protein L	Phage_tail_L
COG	UHGV-0356497_49	COG4672	N/A	N/A	Phage tail protein	N/A
structural_annotation	UHGV-0356497_49	PF08875,TIGR01600,COG4672	N/A	N/A	N/A	N/A
KOfam	UHGV-0356497_50	K00571	67.8	2.1e-19	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0356497_50	phrog_18293	81.7	1.1e-23	methyltransferase	other
UniRef90	UHGV-0356497_50	UniRef90_UPI001CDD23CE	81.6	2.03e-19	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0356497_50	1217656.F964_00563	77.0	1.54e-16	DNA methylase	N/A
PADLOC	UHGV-0356497_50	MTase_II_00157	60.8	5.1e-17	Type II methyltransferase	RM
Pfam	UHGV-0356497_50	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0356497_50	COG0863	N/A	N/A	DNA modification methylase	N/A
KOfam	UHGV-0356497_51	K13695	70.7	2.3e-20	nlpC; probable lipoprotein NlpC	N/A
PHROG	UHGV-0356497_51	phrog_329	72.2	4.8e-21	minor tail protein	tail
UniRef90	UHGV-0356497_51	UniRef90_G5GM52	196.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0356497_51	679201.HMPREF9334_00333	196.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0356497_51	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0356497_51	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0356497_51	PF00877,NF008096,COG3234	N/A	N/A	N/A	N/A
PHROG	UHGV-0356497_52	phrog_31	392.1	0	baseplate hub protein Tal	tail
UniRef90	UHGV-0356497_52	UniRef90_G5GM53	1152.0	0	Phage-tail_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0356497_52	679201.HMPREF9334_00334	1152.0	0	cellulase activity	N/A
Pfam	UHGV-0356497_52	PF13550	N/A	N/A	Putative phage tail protein	Phage-tail_3
Pfam	UHGV-0356497_52	PF09458	N/A	N/A	H-type lectin domain	H_lectin
COG	UHGV-0356497_52	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0356497_52	PF13550,PF00041,PF09294,PF17936,PF14109,NF040662,NF041335,COG4733	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0356497	Yes	38,210	57	66	1