vOTU vOTU-157569

vOTU: vOTU-157569

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-157569
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00003 → vOTU-157569
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium
Host range breadth	Genus
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0232210
Biosample ID	N/A
Genome length (bp)	22,820 bps
CheckV completeness	53.75% (Medium-quality)
CDS count	34
CDS density	84.11%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium	Total connections	3	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 53.75)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0232210_5	phrog_38313	106.7	2.3e-31	N/A	unknown function
UniRef90	UHGV-0232210_5	UniRef90_UPI00164C5E3C	732.0	0	IS91 family transposase	N/A
eggNOG-mapper	UHGV-0232210_5	545697.HMPREF0216_03064	514.0	0	Putative transposase	N/A
Pfam	UHGV-0232210_5	PF14319	N/A	N/A	Transposase zinc-binding domain	Zn_Tnp_IS91
Pfam	UHGV-0232210_5	PF04986	N/A	N/A	Putative transposase	Y2_Tnp
NCBIFam	UHGV-0232210_5	NF033538.1	N/A	N/A	IS91 family transposase	N/A
COG	UHGV-0232210_5	COG0517	N/A	N/A	CBS domain	N/A
structural_annotation	UHGV-0232210_5	PF04986,PF14319,NF033538,COG5655	N/A	N/A	N/A	N/A
KOfam	UHGV-0232210_6	K04763	237.6	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0232210_6	phrog_1	145.9	3.60134e-43	integrase	integration and excision
UniRef90	UHGV-0232210_6	UniRef90_UPI0017822E27	542.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0232210_6	545697.HMPREF0216_03065	368.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0232210_6	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0232210_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0232210_6	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0232210_6	PF00589,PF02899,MF_01808,TIGR02225,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0232210_7	UniRef90_A0A3D4FKY9	208.0	0	Transposase	N/A
eggNOG-mapper	UHGV-0232210_7	1476973.JMMB01000007_gene1960	207.0	0	N/A	N/A
Pfam	UHGV-0232210_7	PF19776	N/A	N/A	N/A	DUF6262
KOfam	UHGV-0232210_8	K04763	131.3	1.1e-38	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0232210_8	phrog_1	116.7	2e-34	integrase	integration and excision
UniRef90	UHGV-0232210_8	UniRef90_UPI0013E34720	673.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0232210_8	86416.Clopa_2266	571.0	0	Phage integrase family	N/A
Pfam	UHGV-0232210_8	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0232210_8	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
KOfam	UHGV-0232210_9	K04763	215.1	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0232210_9	phrog_1	149.8	2.10195e-44	integrase	integration and excision
UniRef90	UHGV-0232210_9	UniRef90_A0A0S6TZJ3	608.0	0	Tn554-related, transposase A	N/A
eggNOG-mapper	UHGV-0232210_9	86416.Clopa_2265	555.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0232210_9	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-0232210_9	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0232210_9	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0232210_9	PF00589,PF12834,PF12167,MF_01807,NF001399,NF041908,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0232210_10	K06909	370.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0232210_10	phrog_3717	168.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0232210_10	UniRef90_A0A1B8RSV7	820.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0232210_10	1280689.AUJC01000003_gene962	822.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0232210_10	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0232210_10	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0232210_10	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0232210_10	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0232210_10	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0232210_11	K07474	105.8	8.9e-31	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0232210_11	phrog_51	124.5	8.8e-37	terminase small subunit	head and packaging
UniRef90	UHGV-0232210_11	UniRef90_UPI00082AA11C	163.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0232210_11	1158614.I592_02274	99.0	1.56e-24	Terminase small subunit	N/A
Pfam	UHGV-0232210_11	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0232210_11	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0232210_11	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0232210_13	phrog_5990	330.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0232210_13	1196028.ALEF01000043_gene442	224.0	0	N/A	N/A
structural_annotation	UHGV-0232210_13	PF00227,MF_02113_A,TIGR03634,COG0638	N/A	N/A	N/A	N/A
PHROG	UHGV-0232210_14	phrog_36	64.8	1.3e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0232210_14	UniRef90_A0A1C6KXU9	294.0	0	Phage transcriptional regulator, RinA family	N/A
eggNOG-mapper	UHGV-0232210_14	1031288.AXAA01000059_gene1754	149.0	1.55544e-43	N/A	N/A
structural_annotation	UHGV-0232210_14	PF08281,MF_00245,NF001068,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0232210_16	1443125.Z962_p0038	136.0	1.23e-35	N/A	N/A
KOfam	UHGV-0232210_17	K03111	139.2	4.49999e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0232210_17	phrog_44	140.2	1.29998e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0232210_17	UniRef90_UPI00189AA13B	224.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0232210_17	457396.CSBG_03291	216.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0232210_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0232210_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0232210_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0232210_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0232210_17	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0232210_19	phrog_190	146.1	1.90577e-43	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0232210_19	UniRef90_A0A7X9XP27	241.0	0	N/A	N/A
eggNOG-mapper	UHGV-0232210_19	1280689.AUJC01000003_gene945	260.0	0	N/A	N/A
Pfam	UHGV-0232210_19	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0232210_19	PF06356,MF_04160,NF033179,COG2887	N/A	N/A	N/A	N/A
UniRef90	UHGV-0232210_20	UniRef90_UPI0015D49531	68.9	0.0000000000000243	transcriptional regulator	N/A
PHROG	UHGV-0232210_21	phrog_2514	121.3	7.7e-36	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0232210_21	UniRef90_U2NRZ7	194.0	0	DnaA_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0232210_21	1499683.CCFF01000014_gene3932	223.0	0	Transcriptional regulator	N/A
COG	UHGV-0232210_21	COG2188	N/A	N/A	DNA-binding transcriptional regulator, GntR family	N/A
structural_annotation	UHGV-0232210_21	PF09681,PF17214,MF_01819,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-0232210_22	K07455	233.7	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0232210_22	phrog_148	239.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0232210_22	UniRef90_A0A3P6KDM7	491.0	0	RecT family protein	N/A
eggNOG-mapper	UHGV-0232210_22	195103.CPF_0939	388.0	0	RecT family	N/A
Pfam	UHGV-0232210_22	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0232210_22	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0232210_22	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0232210_22	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0232210_23	phrog_434	388.4	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0232210_23	UniRef90_UPI00189861E3	525.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0232210_23	1443125.Z962_05755	426.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-0232210_23	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0232210_23	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0232210_23	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0232210_23	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0232210_26	phrog_7199	71.9	5.1e-21	RNA polymerase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0232210_27	318464.IO99_13855	91.3	1.94e-21	N/A	N/A
KOfam	UHGV-0232210_29	K07741	71.2	3.1e-20	antB; anti-repressor protein	N/A
PHROG	UHGV-0232210_29	phrog_130	166.4	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0232210_29	UniRef90_A0A2X2Y667	341.0	0	Antirepressor, phage associated	N/A
eggNOG-mapper	UHGV-0232210_29	1211817.CCAT010000007_gene1061	213.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0232210_29	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0232210_29	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0232210_29	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0232210_29	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0232210_30	UniRef90_UPI001C1E1EE3	123.0	1.93e-35	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0232210_30	1415774.U728_1714	111.0	1.19e-31	Helix-turn-helix domain	N/A
Pfam	UHGV-0232210_30	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0232210_30	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-0232210_30	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0232210_31	UniRef90_UPI00177E990F	113.0	1.14e-31	N/A	N/A
eggNOG-mapper	UHGV-0232210_31	1121947.AUHK01000002_gene903	81.6	8.51e-20	N/A	N/A
Pfam	UHGV-0232210_31	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0232210_31	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0232210_31	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0232210_32	K22300	46.6	0.00000000000077	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0232210_32	phrog_2967	55.3	4.4e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0232210_32	UniRef90_UPI000C07F6E3	258.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0232210_32	411470.RUMGNA_03230	122.0	9.31e-33	sequence-specific DNA binding	N/A
COG	UHGV-0232210_32	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0232210_32	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0232210_33	phrog_87	74.9	7.9e-22	metallo-protease	other
UniRef90	UHGV-0232210_33	UniRef90_UPI000DCFE9A3	255.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0232210_33	999411.HMPREF1092_00880	204.0	0	Zn peptidase	N/A
Pfam	UHGV-0232210_33	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0232210_33	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0232210_33	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0232210_34	K14059	233.2	0	int; integrase	N/A
PHROG	UHGV-0232210_34	phrog_1	229.5	0	integrase	integration and excision
UniRef90	UHGV-0232210_34	UniRef90_UPI001C1E7567	740.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0232210_34	536233.CLO_0855	655.0	0	Arm DNA-binding domain	N/A
Pfam	UHGV-0232210_34	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0232210_34	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0232210_34	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0232210_34	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0232210_34	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0232210	Yes	22,820	28	54	1