vOTU vOTU-157593

vOTU: vOTU-157593

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-157593
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter sp900543445
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-00040 → vGENUS-08374 → vOTU-157593
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter faecis
Host range breadth	Species
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-0127343
Biosample ID	N/A
Genome length (bp)	42,085 bps
CheckV completeness	72.92% (Medium-quality)
CDS count	64
CDS density	83.52%
tRNA count	4
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter faecis	Total connections	377	Host agreement	74.8
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter sp900543445	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 72.92)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0127343_1	phrog_4433	180.4	0	N/A	unknown function
UniRef90	UHGV-0127343_1	UniRef90_UPI00045B9709	132.0	1.53e-36	collagen-like protein	N/A
eggNOG-mapper	UHGV-0127343_1	33035.JPJF01000122_gene2458	169.0	0	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0127343_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-0127343_2	phrog_2164	92.0	3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0127343_2	1174684.EBMC1_14695	57.4	0.00000023	N/A	N/A
structural_annotation	UHGV-0127343_3	PF16103	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0127343_5	397290.C810_01464	123.0	1.12e-33	N/A	N/A
KOfam	UHGV-0127343_6	K19171	73.6	1.8e-21	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0127343_6	phrog_77	146.5	2.00386e-43	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0127343_6	UniRef90_A0A174JMG0	441.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0127343_6	1232453.BAIF02000057_gene1134	484.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0127343_6	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0127343_6	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
KOfam	UHGV-0127343_7	K03111	44.2	0.00000000000095	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0127343_7	phrog_26861	115.1	4.4e-34	N/A	unknown function
UniRef90	UHGV-0127343_7	UniRef90_A0A0D8I7C9	143.0	3.22e-39	Single-strand binding protein/primosomal replication protein n	N/A
eggNOG-mapper	UHGV-0127343_7	397290.C810_01452	154.0	3.78351e-44	Single-strand binding protein family	N/A
Pfam	UHGV-0127343_7	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0127343_7	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0127343_7	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0127343_9	K08309	73.8	3.7e-21	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	N/A
PHROG	UHGV-0127343_9	phrog_19890	92.5	4.3e-27	N/A	unknown function
UniRef90	UHGV-0127343_9	UniRef90_A0A396AHW9	137.0	4.82e-38	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0127343_9	742741.HMPREF9475_00405	91.3	2.49e-20	Transglycosylase SLT domain	N/A
Pfam	UHGV-0127343_9	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0127343_9	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0127343_9	PF01464,MF_01381,NF011856,COG0741	N/A	N/A	N/A	N/A
KOfam	UHGV-0127343_11	K07741	199.1	0	antB; anti-repressor protein	N/A
PHROG	UHGV-0127343_11	phrog_63	177.3	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0127343_11	UniRef90_UPI001C00DDF6	353.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0127343_11	658655.HMPREF0988_02592	299.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-0127343_11	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0127343_11	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0127343_11	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0127343_11	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-0127343_12	phrog_8	49.1	0.00000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0127343_12	UniRef90_UPI001D081A91	81.6	2.94e-19	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0127343_12	1203606.HMPREF1526_00303	65.5	0.000000000000316	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0127343_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0127343_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0127343_12	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0127343_13	phrog_8	54.1	0.000000000000004	transcriptional regulator	transcription regulation
UniRef90	UHGV-0127343_13	UniRef90_A0A416G2G1	103.0	1.31e-26	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0127343_13	411462.DORLON_00819	59.3	0.000000000967	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0127343_13	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0127343_13	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0127343_13	PF12844,NF041951,COG3655	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0127343_17	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0127343_17	NF040910	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0127343_18	1232452.BAIB02000007_gene1607	82.4	2.36e-18	N/A	N/A
PHROG	UHGV-0127343_21	phrog_17196	93.8	1.9e-27	kinase	other
eggNOG-mapper	UHGV-0127343_21	1235790.C805_00090	127.0	6.9e-32	N/A	N/A
structural_annotation	UHGV-0127343_21	PF13619,COG3536	N/A	N/A	N/A	N/A
PHROG	UHGV-0127343_22	phrog_2566	48.9	0.0000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0127343_22	702450.CUW_0544	48.1	0.00000223	N/A	N/A
PHROG	UHGV-0127343_23	phrog_18190	496.7	0	N/A	unknown function
UniRef90	UHGV-0127343_23	UniRef90_A0A173UFM3	719.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0127343_23	397290.C810_01435	300.0	0	N/A	N/A
Pfam	UHGV-0127343_23	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0127343_23	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0127343_24	phrog_1194	45.9	0.00000000000085	N/A	unknown function
Pfam	UHGV-0127343_24	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0127343_24	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0127343_25	phrog_9700	119.6	2.70002e-41	N/A	unknown function
eggNOG-mapper	UHGV-0127343_25	476272.RUMHYD_01979	125.0	3.53e-29	N/A	N/A
Pfam	UHGV-0127343_25	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
PHROG	UHGV-0127343_26	phrog_1535	68.4	1.6e-21	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0127343_26	397290.C810_01419	97.8	7.78e-18	Transglycosylase SLT domain	N/A
COG	UHGV-0127343_26	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0127343_27	phrog_7168	80.8	4.2e-24	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0127343_27	UniRef90_A0A173UI60	604.0	0	Group I intron endonuclease	N/A
eggNOG-mapper	UHGV-0127343_27	745718.JADT01000019_gene1515	84.7	1.11e-16	Intron encoded nuclease repeat motif	N/A
Pfam	UHGV-0127343_27	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
Pfam	UHGV-0127343_27	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
NCBIFam	UHGV-0127343_27	TIGR01453.1	N/A	N/A	group I intron endonuclease	N/A
structural_annotation	UHGV-0127343_27	PF07453,PF19835,PF04936,TIGR01453	N/A	N/A	N/A	N/A
UniRef90	UHGV-0127343_28	UniRef90_A0A173UI54	384.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0127343_28	1408437.JNJN01000010_gene1238	105.0	2.29e-22	domain protein	N/A
COG	UHGV-0127343_28	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0127343_28	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0127343_29	phrog_14030	132.0	3.4e-39	N/A	unknown function
UniRef90	UHGV-0127343_29	UniRef90_A0A3R6ARM6	210.0	0	Peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0127343_29	1235793.C809_02691	169.0	0	N-Acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-0127343_29	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
UniRef90	UHGV-0127343_32	UniRef90_A0A8D9PGN2	185.0	0	Major tail protein	N/A
structural_annotation	UHGV-0127343_32	PF16463,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0127343_33	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0127343_34	1298920.KI911353_gene2654	176.0	0	N/A	N/A
AcrCatalog	UHGV-0127343_34	cluster_24841	99.4	2.9e-28	NA	N/A
structural_annotation	UHGV-0127343_35	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0127343_36	phrog_443	54.8	0.0000000000000029	holin	lysis
UniRef90	UHGV-0127343_36	UniRef90_UPI000BA3B743	98.6	9.63e-26	holin	N/A
eggNOG-mapper	UHGV-0127343_36	411490.ANACAC_00704	87.8	2.78e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0127343_36	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0127343_36	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0127343_37	phrog_4105	83.1	2.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0127343_37	411459.RUMOBE_00911	158.0	0	N/A	N/A
eggNOG-mapper	UHGV-0127343_38	397290.C810_01402	55.8	0.0000000199	N/A	N/A
PHROG	UHGV-0127343_39	phrog_29	174.7	0	major head protein	head and packaging
UniRef90	UHGV-0127343_39	UniRef90_A0A2S6HJ16	395.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-0127343_39	1232443.BAIA02000078_gene29	329.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0127343_39	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
Pfam	UHGV-0127343_39	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0127343_39	PF03864,PF18316,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0127343_40	phrog_909	67.9	1.4e-19	major head protein	head and packaging
UniRef90	UHGV-0127343_40	UniRef90_A0A0R1VNK8	67.8	0.00000000000247	N/A	N/A
eggNOG-mapper	UHGV-0127343_40	1497679.EP56_02915	68.6	0.000000000000131	N/A	N/A
structural_annotation	UHGV-0127343_40	PF02924	N/A	N/A	N/A	N/A
UniRef90	UHGV-0127343_41	UniRef90_R6C0B6	116.0	1.25e-29	Phage capsid scaffolding protein	N/A
PHROG	UHGV-0127343_42	phrog_64	176.5	0	portal protein	head and packaging
UniRef90	UHGV-0127343_42	UniRef90_A0A173UGW9	894.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-0127343_42	1298920.KI911353_gene2663	456.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0127343_42	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0127343_42	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0127343_43	phrog_36	59.5	7.2e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0127343_43	UniRef90_A0A7C6D6F2	84.3	4.8e-18	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0127343_43	203119.Cthe_1732	72.0	0.000000000000043	sigma factor activity	N/A
Pfam	UHGV-0127343_43	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0127343_43	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0127343_43	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0127343_44	phrog_38	152.4	2.8026e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0127343_44	UniRef90_A0A4Q5C857	963.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0127343_44	397290.C810_01390	651.0	0	chromosome segregation	N/A
COG	UHGV-0127343_44	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0127343_44	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0127343_45	phrog_2834	44.4	0.0000000000023	N/A	unknown function
eggNOG-mapper	UHGV-0127343_51	658655.HMPREF0988_00895	73.2	0.0000000000000963	N/A	N/A
UniRef90	UHGV-0127343_52	UniRef90_F5L211	99.4	7.48e-25	Conserved domain protein	N/A
structural_annotation	UHGV-0127343_52	PF19923	N/A	N/A	N/A	N/A
PHROG	UHGV-0127343_53	phrog_31631	41.8	0.000000000014	N/A	unknown function
PHROG	UHGV-0127343_57	phrog_1233	57.0	4.3e-16	N/A	unknown function
UniRef90	UHGV-0127343_57	UniRef90_A0A345BPX6	99.8	4.02e-25	Metal-dependent hydrolase	N/A
eggNOG-mapper	UHGV-0127343_57	658655.HMPREF0988_00914	97.8	4.34e-25	N/A	N/A
eggNOG-mapper	UHGV-0127343_58	658655.HMPREF0988_00915	109.0	1.25e-26	N/A	N/A
PHROG	UHGV-0127343_59	phrog_20016	232.0	0	N/A	unknown function
UniRef90	UHGV-0127343_59	UniRef90_A0A285PT46	165.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0127343_59	397290.C810_05214	234.0	0	N/A	N/A
structural_annotation	UHGV-0127343_59	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0127343_60	phrog_16490	182.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0127343_60	397290.C810_01328	118.0	9.96e-29	N/A	N/A
eggNOG-mapper	UHGV-0127343_61	658655.HMPREF0988_00918	72.4	6.78e-16	N/A	N/A
eggNOG-mapper	UHGV-0127343_62	397290.C810_01326	68.9	0.00000000000239	N/A	N/A
structural_annotation	UHGV-0127343_62	NF033819	N/A	N/A	N/A	N/A
KOfam	UHGV-0127343_64	K03664	248.0	0	smpB; SsrA-binding protein	N/A
PHROG	UHGV-0127343_64	phrog_6791	212.8	0	N/A	unknown function
UniRef90	UHGV-0127343_64	UniRef90_A0A0M6WYX5	293.0	0	SsrA-binding protein	N/A
eggNOG-mapper	UHGV-0127343_64	140626.JHWB01000016_gene2301	278.0	0	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA	N/A
Pfam	UHGV-0127343_64	PF01668	N/A	N/A	SmpB protein	SmpB
NCBIFam	UHGV-0127343_64	NF003843.0	N/A	N/A	SsrA-binding protein SmpB	N/A
COG	UHGV-0127343_64	COG0691	N/A	N/A	tmRNA-binding protein	N/A
HAMAP	UHGV-0127343_64	MF_00023	N/A	N/A	SsrA-binding protein [smpB]	N/A
structural_annotation	UHGV-0127343_64	PF01668,MF_00023,NF003843,COG0691	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0127343	Yes	42,085	41	73	1
UHGV-0200429	No	41,505	41	72	1