vOTU vOTU-157685

vOTU: vOTU-157685

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-157685
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00111 → vOTU-157685
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1391504
Biosample ID	SAMEA3664620
Genome length (bp)	31,301 bps
CheckV completeness	88.97% (Medium-quality)
CDS count	42
CDS density	91.58%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1475	Host agreement	87.86
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	26	Host agreement	96.15

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.97)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1391504_1	K14059	110.3	2.8e-32	int; integrase	N/A
PHROG	UHGV-1391504_1	phrog_1	135.8	4.1e-40	integrase	integration and excision
UniRef90	UHGV-1391504_1	UniRef90_A0A374MXE7	808.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1391504_1	693746.OBV_41260	187.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1391504_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1391504_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1391504_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1391504_2	UniRef90_UPI000E52DA24	736.0	0	zinc ribbon domain-containing protein	N/A
Pfam	UHGV-1391504_2	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-1391504_2	PF18933,PF02883,MF_02248,NF008627,COG5435,COG2847	N/A	N/A	N/A	N/A
PHROG	UHGV-1391504_3	phrog_1914	143.7	1.10002e-42	N/A	unknown function
UniRef90	UHGV-1391504_3	UniRef90_A0A374NDM7	328.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1391504_3	1160721.RBI_I01604	163.0	0	N/A	N/A
Pfam	UHGV-1391504_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1391504_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1391504_3	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-1391504_4	UniRef90_A0A373XLN2	156.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1391504_4	1408823.AXUS01000025_gene2653	58.9	0.00000000852	N/A	N/A
structural_annotation	UHGV-1391504_4	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1391504_5	UniRef90_A0A374DVN3	161.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1391504_5	1219626.HMPREF1639_07045	47.8	0.00000322	N/A	N/A
PHROG	UHGV-1391504_7	phrog_585	114.4	7.3e-34	N/A	unknown function
UniRef90	UHGV-1391504_7	UniRef90_UPI00051C896C	145.0	2.30934e-42	N/A	N/A
eggNOG-mapper	UHGV-1391504_7	1033744.CAEL01000029_gene1306	131.0	2.89e-37	N/A	N/A
Pfam	UHGV-1391504_7	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-1391504_7	PF10711,MF_01819,TIGR03433,COG3432	N/A	N/A	N/A	N/A
PHROG	UHGV-1391504_9	phrog_6058	41.5	0.000000000016	N/A	unknown function
structural_annotation	UHGV-1391504_9	NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-1391504_13	K03427	40.6	0.000000000028	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1391504_13	phrog_5696	212.1	0	N/A	unknown function
UniRef90	UHGV-1391504_13	UniRef90_UPI001B3C9C54	244.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-1391504_13	397291.C804_06560	144.0	1.68e-39	N-6 DNA Methylase	N/A
Pfam	UHGV-1391504_13	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1391504_13	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1391504_13	COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-1391504_14	phrog_323	80.5	6.2e-27	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1391504_14	UniRef90_UPI001C01CFF8	237.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-1391504_14	756499.Desde_1065	270.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
Pfam	UHGV-1391504_14	PF00249	N/A	N/A	Myb-like DNA-binding domain	Myb_DNA-binding
dbAPIS	UHGV-1391504_14	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-1391504_14	PF13936,NF040595,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-1391504_15	K04763	207.8	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1391504_15	phrog_1	161.6	0	integrase	integration and excision
UniRef90	UHGV-1391504_15	UniRef90_UPI001B3C6404	384.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1391504_15	1235793.C809_01951	222.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1391504_15	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1391504_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1391504_15	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1391504_15	PF00589,PF13495,MF_01808,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-1391504_16	K07729	52.4	0.000000000000013	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1391504_16	phrog_8	61.6	1.9e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1391504_16	UniRef90_A0A374N9T4	106.0	6e-29	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1391504_16	997346.HMPREF9374_1157	67.4	0.000000000000888	sequence-specific DNA binding	N/A
PADLOC	UHGV-1391504_16	retron_type_VI_hth_cluster2_1	42.5	0.000000000019	N/A	Retron
Pfam	UHGV-1391504_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1391504_16	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1391504_16	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1391504_18	phrog_24518	52.4	0.0000000000000087	N/A	unknown function
eggNOG-mapper	UHGV-1391504_18	1519439.JPJG01000077_gene922	63.2	0.000000000275	N/A	N/A
PHROG	UHGV-1391504_19	phrog_824	146.1	9.94922e-44	N/A	unknown function
UniRef90	UHGV-1391504_19	UniRef90_A0A3D3D6C6	247.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1391504_19	397288.C806_00096	157.0	0	VRR_NUC	N/A
Pfam	UHGV-1391504_19	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1391504_19	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1391504_21	phrog_2118	121.2	9.6e-36	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1391504_21	UniRef90_A0A374DVG7	243.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1391504_21	610130.Closa_0730	149.0	4.2039e-45	HNH endonuclease	N/A
Pfam	UHGV-1391504_21	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1391504_21	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1391504_21	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1391504_22	phrog_8684	94.0	9.5e-28	N/A	unknown function
UniRef90	UHGV-1391504_22	UniRef90_A0A374DV44	175.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1391504_22	563031.HMPREF0666_01127	80.5	1.01e-17	YopX protein	N/A
Pfam	UHGV-1391504_22	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1391504_22	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1391504_22	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1391504_25	phrog_3584	146.9	1.49939e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1391504_25	1235800.C819_00515	68.6	0.0000000000654	N/A	N/A
structural_annotation	UHGV-1391504_25	PF21578,NF041486	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1391504_26	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1391504_27	phrog_119	70.8	2.1e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1391504_27	UniRef90_A0A412ULY9	224.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1391504_27	1158607.UAU_01026	102.0	5.07e-27	HNH endonuclease	N/A
Pfam	UHGV-1391504_27	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1391504_27	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1391504_28	phrog_5110	82.7	3e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1391504_28	UniRef90_A0A4U7JDP0	114.0	8.67e-31	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1391504_28	86416.Clopa_0336	100.0	4.21e-26	N/A	N/A
Pfam	UHGV-1391504_28	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1391504_28	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1391504_29	phrog_9	299.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1391504_29	UniRef90_A0A412UM03	1016.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1391504_29	86416.Clopa_0337	640.0	0	Phage Terminase	N/A
Pfam	UHGV-1391504_29	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1391504_29	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1391504_29	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1391504_29	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1391504_30	phrog_12	103.8	1.4e-30	portal protein	head and packaging
UniRef90	UHGV-1391504_30	UniRef90_A0A412ULV9	716.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1391504_30	1415774.U728_1254	272.0	0	Phage portal protein	N/A
Pfam	UHGV-1391504_30	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1391504_30	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1391504_30	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1391504_30	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1391504_31	K01358	136.9	2e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1391504_31	phrog_94	207.5	0	head maturation protease	head and packaging
UniRef90	UHGV-1391504_31	UniRef90_A0A412ULU1	435.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1391504_31	86416.Clopa_0340	171.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1391504_31	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1391504_31	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1391504_31	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1391504_32	phrog_10	128.0	9e-38	major head protein	head and packaging
UniRef90	UHGV-1391504_32	UniRef90_A0A412ULW9	733.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1391504_32	1211817.CCAT010000053_gene2132	322.0	0	Phage capsid family	N/A
Pfam	UHGV-1391504_32	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1391504_32	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1391504_32	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1391504_32	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1391504_33	phrog_749	56.2	5.3e-16	N/A	unknown function
UniRef90	UHGV-1391504_33	UniRef90_A0A1G5CMX8	109.0	3.71e-29	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1391504_33	1211817.CCAT010000053_gene2133	61.6	0.0000000000517	N/A	N/A
PHROG	UHGV-1391504_34	phrog_19734	72.0	7.1e-21	N/A	unknown function
UniRef90	UHGV-1391504_34	UniRef90_UPI00057FE645	63.2	0.00000000014	phage head closure protein	N/A
eggNOG-mapper	UHGV-1391504_34	86416.Clopa_0343	61.6	0.000000000113	N/A	N/A
NCBIFam	UHGV-1391504_34	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1391504_34	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1391504_35	272623.L59277	50.4	0.00000168	N/A	N/A
structural_annotation	UHGV-1391504_35	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-1391504_36	UniRef90_UPI000E5564A4	275.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1391504_36	1235792.C808_00089	50.1	0.00000847	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1391504_36	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1391504_36	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1391504_37	phrog_88	74.6	1.4e-21	major tail protein	tail
UniRef90	UHGV-1391504_37	UniRef90_A0A1G5CNS8	150.0	1.10002e-42	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1391504_37	1321782.HMPREF1986_01362	65.1	0.000000000192	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1391504_37	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1391504_37	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1391504_38	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-1391504_39	K20283	75.6	1.3e-22	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-1391504_39	phrog_5218	271.8	0	N/A	unknown function
UniRef90	UHGV-1391504_39	UniRef90_A0A412ULX0	1744.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1391504_39	588581.Cpap_1264	249.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1391504_39	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1391504_39	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1391504_39	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1391504_40	phrog_33	71.2	2.5e-20	distal tail protein Dit	tail
UniRef90	UHGV-1391504_40	UniRef90_A0A1G5CPA2	132.0	9.3e-34	Phage-related protein	N/A
eggNOG-mapper	UHGV-1391504_40	1160721.RBI_I01575	90.1	9.57e-19	Phage tail protein	N/A
COG	UHGV-1391504_40	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1391504_40	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1391504_41	phrog_1067	85.1	2e-25	minor head protein	head and packaging
UniRef90	UHGV-1391504_41	UniRef90_A0A1G5CPD2	148.0	2.83e-37	Phage minor structural protein, N-terminal region	N/A
NCBIFam	UHGV-1391504_41	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1391504_41	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1391504_41	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1391504_42	phrog_5302	304.0	0	tail protein	tail
UniRef90	UHGV-1391504_42	UniRef90_A0A373XLZ6	1006.0	0	N/A	N/A
eggNOG-mapper	UHGV-1391504_42	742740.HMPREF9474_02337	324.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-1391504_42	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-1391504_42	PF10651,NF040788	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1391504	Yes	31,301	40	89	1