vOTU vOTU-157695

vOTU: vOTU-157695

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-157695
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00011 → vSUBFAM-01685 → vOTU-157695
Host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lactobacillus → Lactobacillus johnsonii
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0027470
Biosample ID	SAMEA4766022
Genome length (bp)	30,884 bps
CheckV completeness	76.84% (Medium-quality)
CDS count	38
CDS density	94.93%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lactobacillus → Lactobacillus johnsonii	Total connections	9	Host agreement	88.89
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lactobacillus → Lactobacillus johnsonii	Total connections	8	Host agreement	87.5

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 76.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0027470_1	phrog_2566	102.0	2.6e-30	N/A	unknown function
UniRef90	UHGV-0027470_1	UniRef90_A8U7X4	59.7	0.000000000617	Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-0027470_1	257314.LJ_0325	155.0	0	N/A	N/A
PHROG	UHGV-0027470_2	phrog_13529	89.4	1.8e-26	N/A	unknown function
PHROG	UHGV-0027470_3	phrog_1330	576.1	0	tail protein	tail
UniRef90	UHGV-0027470_3	UniRef90_A0A4Z0GEW6	2948.0	0	Peptidase	N/A
eggNOG-mapper	UHGV-0027470_3	257314.LJ_0324	1721.0	0	gp58-like protein	N/A
Pfam	UHGV-0027470_3	PF07902	N/A	N/A	gp58-like protein	Gp58
COG	UHGV-0027470_3	COG0845	N/A	N/A	Multidrug efflux pump subunit AcrA (membrane-fusion protein)	N/A
structural_annotation	UHGV-0027470_3	PF05113,PF00629,PF04862,PF01404,NF033848,NF033675,TIGR04362,COG3500,COG4935	N/A	N/A	N/A	N/A
PHROG	UHGV-0027470_4	phrog_1194	130.5	5.7e-39	N/A	unknown function
UniRef90	UHGV-0027470_4	UniRef90_A0A0R1VMM5	135.0	5.28e-39	N/A	N/A
eggNOG-mapper	UHGV-0027470_4	257314.LJ_0323	208.0	0	N/A	N/A
Pfam	UHGV-0027470_4	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0027470_4	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0027470_5	K10421	41.2	0.0000000000057	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0027470_5	phrog_1535	705.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0027470_5	UniRef90_Q6SE70	2689.0	0	Putative putative minor tail protein	N/A
eggNOG-mapper	UHGV-0027470_5	257314.LJ_0322	2689.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0027470_5	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0027470_6	phrog_2066	131.4	2.8e-39	N/A	unknown function
UniRef90	UHGV-0027470_6	UniRef90_A0A0R2GAJ5	123.0	2.1e-34	N/A	N/A
eggNOG-mapper	UHGV-0027470_6	257314.LJ_0321	192.0	0	N/A	N/A
PHROG	UHGV-0027470_7	phrog_183	71.6	1.1e-20	tail chaperone protein	tail
UniRef90	UHGV-0027470_7	UniRef90_A0A0U5JYD4	229.0	0	Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-0027470_7	257314.LJ_0320	258.0	0	N/A	N/A
Pfam	UHGV-0027470_7	PF19591	N/A	N/A	N/A	DUF6096
structural_annotation	UHGV-0027470_7	PF19591,TIGR01674	N/A	N/A	N/A	N/A
PHROG	UHGV-0027470_8	phrog_158	88.8	7.1e-26	major tail protein	tail
UniRef90	UHGV-0027470_8	UniRef90_Q65PT4	302.0	0	Lj965 prophage major tail protein	N/A
eggNOG-mapper	UHGV-0027470_8	257314.LJ_0319	302.0	0	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0027470_8	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0027470_8	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0027470_9	UniRef90_A0A0R2G0R1	134.0	1.82e-38	N/A	N/A
eggNOG-mapper	UHGV-0027470_9	257314.LJ_0318	236.0	0	N/A	N/A
structural_annotation	UHGV-0027470_9	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0027470_10	phrog_5	71.9	1.1e-20	tail completion or Neck1 protein	connector
UniRef90	UHGV-0027470_10	UniRef90_A0A7W3UJW0	302.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0027470_10	257314.LJ_0317	350.0	0	N/A	N/A
Pfam	UHGV-0027470_10	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0027470_10	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0027470_10	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0027470_11	phrog_2168	153.1	0	N/A	unknown function
UniRef90	UHGV-0027470_11	UniRef90_A0A0R1UW44	157.0	0	N/A	N/A
eggNOG-mapper	UHGV-0027470_11	257314.LJ_0316	243.0	0	N/A	N/A
structural_annotation	UHGV-0027470_11	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0027470_12	phrog_132	49.8	0.000000000000048	head-tail adaptor	connector
UniRef90	UHGV-0027470_12	UniRef90_A0A7W3UJR3	154.0	0	Phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0027470_12	257314.LJ_0315	194.0	0	N/A	N/A
Pfam	UHGV-0027470_12	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0027470_12	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0027470_13	phrog_29	249.7	0	major head protein	head and packaging
UniRef90	UHGV-0027470_13	UniRef90_Q65PT9	678.0	0	Lj965 prophage major head protein	N/A
eggNOG-mapper	UHGV-0027470_13	257314.LJ_0314	678.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0027470_13	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0027470_13	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0027470_14	phrog_909	107.3	7.7e-32	major head protein	head and packaging
eggNOG-mapper	UHGV-0027470_14	257314.LJ_0313	243.0	0	N/A	N/A
PHROG	UHGV-0027470_15	phrog_172	143.7	1.19951e-42	head scaffolding protein	head and packaging
UniRef90	UHGV-0027470_15	UniRef90_A0A8A8L7A9	285.0	0	N/A	N/A
eggNOG-mapper	UHGV-0027470_15	257314.LJ_0312	285.0	0	N/A	N/A
Pfam	UHGV-0027470_15	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0027470_15	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0027470_17	phrog_115	266.4	0	minor head protein	head and packaging
UniRef90	UHGV-0027470_17	UniRef90_F4AH24	675.0	0	Minor head protein	N/A
eggNOG-mapper	UHGV-0027470_17	257314.LJ_0311	543.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0027470_17	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0027470_17	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0027470_17	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027470_17	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
KOfam	UHGV-0027470_18	K07584	60.9	2.6e-17	N/A	N/A
PHROG	UHGV-0027470_18	phrog_4478	79.1	3.6e-23	peptidase	other
UniRef90	UHGV-0027470_18	UniRef90_A0A4Z0GH05	164.0	0	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0027470_18	257314.LJ_0310	128.0	1.53e-37	Cysteine protease Prp	N/A
Pfam	UHGV-0027470_18	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0027470_18	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0027470_19	phrog_64	383.7	0	portal protein	head and packaging
UniRef90	UHGV-0027470_19	UniRef90_A0A1B3PRU8	946.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0027470_19	257314.LJ_0309	855.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0027470_19	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0027470_19	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0027470_19	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0027470_20	K06909	156.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0027470_20	phrog_10250	223.6	0	N/A	unknown function
UniRef90	UHGV-0027470_20	UniRef90_Q65PU5	860.0	0	Lj965 prophage terminase large subunit	N/A
eggNOG-mapper	UHGV-0027470_20	257314.LJ_0308	860.0	0	Terminase-like family	N/A
Pfam	UHGV-0027470_20	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0027470_20	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0027470_20	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0027470_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0027470_20	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0027470_21	K07474	95.0	1.4e-27	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0027470_21	phrog_2606	175.7	0	terminase small subunit	head and packaging
UniRef90	UHGV-0027470_21	UniRef90_A0A8A8VKW6	543.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0027470_21	257314.LJ_0307	503.0	0	Terminase small subunit	N/A
Pfam	UHGV-0027470_21	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
Pfam	UHGV-0027470_21	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0027470_21	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0027470_21	PF03592,PF06056,COG3728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0027470_22	1234679.BN424_1485	94.4	1.49e-22	N/A	N/A
PHROG	UHGV-0027470_23	phrog_11507	131.3	6.3e-39	N/A	unknown function
eggNOG-mapper	UHGV-0027470_23	1314.HKU360_00775	140.0	6.63e-37	N/A	N/A
PHROG	UHGV-0027470_24	phrog_248	87.6	1.5e-25	transcriptional activator	transcription regulation
UniRef90	UHGV-0027470_24	UniRef90_E1NPJ8	149.0	4.69435e-43	Phage transcriptional regulator, ArpU family	N/A
eggNOG-mapper	UHGV-0027470_24	257314.LJ_0303	320.0	0	N/A	N/A
structural_annotation	UHGV-0027470_24	PF07374,TIGR01637	N/A	N/A	N/A	N/A
PHROG	UHGV-0027470_25	phrog_22933	117.4	3.5e-35	N/A	unknown function
eggNOG-mapper	UHGV-0027470_25	324831.LGAS_0596	100.0	1.66e-27	N/A	N/A
PHROG	UHGV-0027470_26	phrog_17520	131.1	1.9e-39	N/A	unknown function
eggNOG-mapper	UHGV-0027470_26	363555.Q20DE8_9CAUD	109.0	8.58e-31	N/A	N/A
PHROG	UHGV-0027470_29	phrog_33595	83.4	1.6e-24	N/A	unknown function
PHROG	UHGV-0027470_30	phrog_20359	119.8	6.2e-36	N/A	unknown function
eggNOG-mapper	UHGV-0027470_30	139871.A9D9P5_9VIRU	107.0	4.53e-29	N/A	N/A
KOfam	UHGV-0027470_31	K01160	55.3	0.0000000000000017	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0027470_31	phrog_140	126.7	1.3e-37	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027470_31	UniRef90_A0A3Q9VEQ2	292.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0027470_31	324831.LGAS_0591	235.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0027470_31	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0027470_31	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0027470_31	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0027470_34	K02315	151.4	7.00649e-45	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0027470_34	phrog_50	159.2	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027470_34	UniRef90_A0A1B3PRU3	520.0	0	DNA replication protein	N/A
eggNOG-mapper	UHGV-0027470_34	578234.B8R682_9CAUD	245.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0027470_34	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
structural_annotation	UHGV-0027470_34	PF01695,MF_00377,NF005931,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0027470_35	phrog_428	159.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027470_35	UniRef90_A0A1B3PRT8	520.0	0	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0027470_35	363555.Q20DG1_9CAUD	166.0	0	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0027470_35	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-0027470_35	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0027470_35	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
structural_annotation	UHGV-0027470_35	PF09524,PF04703,TIGR02220,NF040939,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-0027470_36	phrog_155	74.2	1.7e-21	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027470_36	UniRef90_UPI001CC417F2	117.0	2.17e-28	ERF family protein	N/A
eggNOG-mapper	UHGV-0027470_36	343509.SG0930	65.9	0.000000000543	ERF superfamily	N/A
Pfam	UHGV-0027470_36	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0027470_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0027470_36	PF04404,TIGR00607,COG4319	N/A	N/A	N/A	N/A
PHROG	UHGV-0027470_37	phrog_253	108.6	5.3e-32	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027470_37	UniRef90_C2E6Z7	276.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0027470_37	326425.lhe_1234	147.0	3.95166e-43	Siphovirus Gp157	N/A
Pfam	UHGV-0027470_37	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0027470_37	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0027470_38	phrog_25327	80.6	2.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0027470_38	1206110.L0P7D6_9CAUD	84.0	9.59e-20	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0027470	Yes	30,884	36	77	1