vOTU vOTU-159309

vOTU: vOTU-159309

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-159309
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00079 → vGENUS-01352 → vOTU-159309
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → SFJ001
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0279764
Biosample ID	SAMN10133260
Genome length (bp)	32,876 bps
CheckV completeness	80.78% (Medium-quality)
CDS count	52
CDS density	90.12%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → SFJ001	Total connections	77	Host agreement	87.01
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 80.78)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
COG	UHGV-0279764_1	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
KOfam	UHGV-0279764_2	K00571	119.1	5.3e-35	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0279764_2	phrog_498	455.1	0	DNA methyltransferase	other
UniRef90	UHGV-0279764_2	UniRef90_Q9A0P6	491.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0279764_2	742823.HMPREF9465_00225	434.0	0	PFAM DNA methylase N-4 N-6	N/A
PADLOC	UHGV-0279764_2	MTase_II_00015	404.6	0	Type II methyltransferase	RM
Pfam	UHGV-0279764_2	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0279764_2	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0279764_2	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0279764_2	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0279764_5	K06909	393.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0279764_5	phrog_3717	158.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0279764_5	UniRef90_UPI001959424A	617.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0279764_5	411471.SUBVAR_06507	573.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0279764_5	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0279764_5	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0279764_5	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0279764_5	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0279764_5	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0279764_6	phrog_64	172.8	0	portal protein	head and packaging
UniRef90	UHGV-0279764_6	UniRef90_UPI0018A8A301	586.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0279764_6	673376.F2VHW1_9CAUD	196.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0279764_6	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0279764_6	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0279764_7	phrog_595	119.0	5.7e-35	head maturation protease	head and packaging
UniRef90	UHGV-0279764_7	UniRef90_A0A3A9EHQ6	422.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0279764_7	1111121.HMPREF1247_0797	241.0	0	cell adhesion	N/A
Pfam	UHGV-0279764_7	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0279764_7	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0279764_7	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0279764_9	phrog_774	43.4	0.0000000000074	N/A	unknown function
PHROG	UHGV-0279764_10	phrog_5	79.4	6.1e-23	tail completion or Neck1 protein	connector
UniRef90	UHGV-0279764_10	UniRef90_A0A3A9EIF3	182.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0279764_10	1280685.AUKC01000004_gene1630	100.0	2.93e-25	N/A	N/A
Pfam	UHGV-0279764_10	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0279764_10	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0279764_10	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0279764_11	UniRef90_A0A6B9SU02	91.3	2.73e-19	Fibronectin autolysin	N/A
structural_annotation	UHGV-0279764_11	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0279764_12	phrog_544	114.5	1e-33	major head protein	head and packaging
UniRef90	UHGV-0279764_12	UniRef90_A0A1C6B5R0	329.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0279764_12	476272.RUMHYD_01776	301.0	0	N/A	N/A
structural_annotation	UHGV-0279764_12	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0279764_14	phrog_17977	73.8	1.8e-21	N/A	unknown function
UniRef90	UHGV-0279764_14	UniRef90_UPI00141211AB	100.0	6.51e-25	head-tail adaptor protein	N/A
structural_annotation	UHGV-0279764_14	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0279764_15	phrog_17405	40.3	0.00000000005	head protein	head and packaging
structural_annotation	UHGV-0279764_15	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0279764_16	phrog_885	102.9	2.8e-30	major tail protein	tail
UniRef90	UHGV-0279764_16	UniRef90_A0A843J9F0	171.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0279764_16	1111121.HMPREF1247_0789	177.0	0	N/A	N/A
structural_annotation	UHGV-0279764_16	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0279764_17	phrog_18646	53.2	0.0000000000000064	N/A	unknown function
PHROG	UHGV-0279764_19	phrog_19074	494.1	0	N/A	unknown function
UniRef90	UHGV-0279764_19	UniRef90_UPI0013EE7E04	360.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0279764_19	411462.DORLON_00777	382.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0279764_19	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0279764_19	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0279764_19	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0279764_19	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0279764_20	phrog_33	45.5	0.0000000000016	distal tail protein Dit	tail
UniRef90	UHGV-0279764_20	UniRef90_UPI001C0FCFFA	275.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0279764_20	748224.HMPREF9436_03325	85.1	2.18e-16	Phage tail protein	N/A
Pfam	UHGV-0279764_20	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
structural_annotation	UHGV-0279764_20	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0279764_21	phrog_538	101.0	1.3e-29	minor tail protein	tail
UniRef90	UHGV-0279764_21	UniRef90_A0A6B9SRK1	82.4	0.0000000000000546	Endopeptidase tail protein	N/A
eggNOG-mapper	UHGV-0279764_21	411902.CLOBOL_03869	73.9	0.00000000000671	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0279764_21	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0279764_21	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0279764_22	phrog_9534	125.6	4.8e-37	head protein	head and packaging
eggNOG-mapper	UHGV-0279764_22	431943.CKL_4054	90.5	4.55e-16	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-0279764_22	PF13157	N/A	N/A	N/A	N/A
KOfam	UHGV-0279764_23	K03646	41.2	0.000000000034	tolA; colicin import membrane protein	N/A
eggNOG-mapper	UHGV-0279764_23	411483.FAEPRAA2165_00757	149.0	2.56e-37	N/A	N/A
KOfam	UHGV-0279764_25	K07273	202.3	0	acm; lysozyme	N/A
PHROG	UHGV-0279764_25	phrog_291	158.1	0	endolysin	lysis
UniRef90	UHGV-0279764_25	UniRef90_UPI00164A97A0	203.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0279764_25	537013.CLOSTMETH_03464	169.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0279764_25	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0279764_25	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0279764_25	PF01183,PF05194,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0279764_26	97138.C820_00248	62.4	0.00000000000891	N/A	N/A
PHROG	UHGV-0279764_27	phrog_1129	78.7	4.7e-23	holin	lysis
UniRef90	UHGV-0279764_27	UniRef90_A0A3R5ZDU6	134.0	3.56e-39	Holin	N/A
eggNOG-mapper	UHGV-0279764_27	1256908.HMPREF0373_00463	125.0	1.35e-36	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0279764_27	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0279764_27	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0279764_28	K07684	44.9	0.0000000000021	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	N/A
Pfam	UHGV-0279764_28	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0279764_28	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-0279764_28	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0279764_29	1394176.AWUO01000014_gene642	107.0	8.82e-28	N/A	N/A
structural_annotation	UHGV-0279764_29	PF07825,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0279764_32	phrog_3754	95.2	7.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0279764_32	476272.RUMHYD_01764	151.0	1.4013e-45	N/A	N/A
PHROG	UHGV-0279764_33	phrog_21718	125.7	2.9e-37	N/A	unknown function
eggNOG-mapper	UHGV-0279764_33	397290.C810_05210	103.0	6.23e-26	N/A	N/A
PHROG	UHGV-0279764_34	phrog_22984	66.3	4.8e-19	N/A	unknown function
PHROG	UHGV-0279764_35	phrog_16490	125.4	6.2e-38	N/A	unknown function
eggNOG-mapper	UHGV-0279764_35	1408437.JNJN01000043_gene803	107.0	2.31e-25	N/A	N/A
PHROG	UHGV-0279764_36	phrog_20016	197.8	0	N/A	unknown function
UniRef90	UHGV-0279764_36	UniRef90_A0A285PT46	213.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0279764_36	1226322.HMPREF1545_00077	175.0	0	N/A	N/A
structural_annotation	UHGV-0279764_36	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0279764_37	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0279764_38	1226322.HMPREF1545_00079	66.2	0.00000000000139	N/A	N/A
KOfam	UHGV-0279764_39	K14059	162.5	0	int; integrase	N/A
PHROG	UHGV-0279764_39	phrog_1	168.3	0	integrase	integration and excision
UniRef90	UHGV-0279764_39	UniRef90_UPI0019575017	471.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0279764_39	1507.HMPREF0262_00307	215.0	0	Phage integrase family	N/A
Pfam	UHGV-0279764_39	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0279764_39	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0279764_39	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0279764_39	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0279764_40	UniRef90_UPI0008637161	53.9	0.00000985	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0279764_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0279764_40	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0279764_40	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0279764_42	phrog_585	66.8	4.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-0279764_42	416870.llmg_2131	53.5	0.000000555	N/A	N/A
Pfam	UHGV-0279764_42	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-0279764_42	PF10711,TIGR04176,COG1695	N/A	N/A	N/A	N/A
PHROG	UHGV-0279764_43	phrog_8	51.7	0.000000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0279764_43	UniRef90_UPI001CBE4822	82.8	2.72e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0279764_43	411483.FAEPRAA2165_00756	55.8	0.0000000745	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0279764_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0279764_43	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0279764_43	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0279764_44	UniRef90_A0A1C7FQD9	84.7	4.52e-20	Transcriptional regulator	N/A
structural_annotation	UHGV-0279764_44	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0279764_45	K07741	89.8	7.3e-26	antB; anti-repressor protein	N/A
PHROG	UHGV-0279764_45	phrog_130	234.0	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0279764_45	UniRef90_A0A2S0M989	258.0	0	Phage antirepressor protein	N/A
eggNOG-mapper	UHGV-0279764_45	862517.HMPREF9225_0464	243.0	0	BRO family, N-terminal domain protein	N/A
Pfam	UHGV-0279764_45	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0279764_45	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0279764_45	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0279764_45	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0279764_47	PF21611	N/A	N/A	N/A	N/A
KOfam	UHGV-0279764_48	K22300	59.8	7e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0279764_48	phrog_8	52.3	0.000000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0279764_48	UniRef90_A0A838JA74	63.2	0.0000000000114	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0279764_48	479434.Sthe_2230	60.1	0.0000000000349	sequence-specific DNA binding	N/A
Pfam	UHGV-0279764_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0279764_48	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0279764_48	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0279764_50	PF11034	N/A	N/A	N/A	N/A
PHROG	UHGV-0279764_52	phrog_4433	174.4	0	N/A	unknown function
UniRef90	UHGV-0279764_52	UniRef90_A0A6M5C839	107.0	4.56e-26	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0279764_52	767434.Fraau_1460	110.0	3.2e-27	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0279764_52	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0279764	Yes	32,876	54	81	1