vOTU vOTU-159758

vOTU: vOTU-159758

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-159758
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00026 → vSUBFAM-01032 → vGENUS-07535 → vOTU-159758
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900540255
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0388458
Biosample ID	N/A
Genome length (bp)	29,972 bps
CheckV completeness	77.91% (Medium-quality)
CDS count	37
CDS density	93.75%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900540255	Total connections	40	Host agreement	77.5
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900540255	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 77.91)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0388458_1	phrog_11769	182.8	0	N/A	unknown function
UniRef90	UHGV-0388458_1	UniRef90_UPI001055AEED	241.0	0	phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0388458_1	536232.CLM_1634	194.0	0	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0388458_1	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0388458_1	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0388458_2	PF19849	N/A	N/A	N/A	N/A
PHROG	UHGV-0388458_3	phrog_155	101.5	8.5e-30	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0388458_3	UniRef90_A0A4Q0VH70	198.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0388458_3	1095743.HMPREF1054_1927	154.0	8.40779e-45	ERF superfamily	N/A
Pfam	UHGV-0388458_3	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0388458_3	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0388458_4	phrog_2205	155.2	0	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0388458_4	UniRef90_A0A174EZ57	277.0	0	N/A	N/A
eggNOG-mapper	UHGV-0388458_4	1415774.U728_1122	194.0	0	Bacteriophage Mu Gam like protein	N/A
Pfam	UHGV-0388458_4	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
structural_annotation	UHGV-0388458_4	PF07352	N/A	N/A	N/A	N/A
UniRef90	UHGV-0388458_5	UniRef90_A0A1C6HV05	91.7	5.62e-23	Spo0E like sporulation regulatory protein	N/A
Pfam	UHGV-0388458_5	PF09388	N/A	N/A	Spo0E like sporulation regulatory protein	SpoOE-like
PHROG	UHGV-0388458_6	phrog_373	171.6	0	anti-repressor	transcription regulation
UniRef90	UHGV-0388458_6	UniRef90_A0A174DDH4	290.0	0	Phage regulatory protein, Rha family	N/A
eggNOG-mapper	UHGV-0388458_6	536232.CLM_1619	217.0	0	ORF6C domain	N/A
Pfam	UHGV-0388458_6	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0388458_6	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0388458_6	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0388458_6	PF10552,PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-0388458_8	K18830	59.7	6.3e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0388458_8	phrog_4	48.0	0.00000000000028	transcriptional repressor	transcription regulation
UniRef90	UHGV-0388458_8	UniRef90_A0A1C6KPF1	171.0	0	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-0388458_8	1123511.KB905843_gene1000	84.7	1.74e-19	sequence-specific DNA binding	N/A
Pfam	UHGV-0388458_8	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0388458_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0388458_8	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0388458_10	K22299	46.2	0.00000000000095	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0388458_10	phrog_3	49.4	0.00000000000019	transcriptional repressor	transcription regulation
UniRef90	UHGV-0388458_10	UniRef90_A0A1C6KN99	72.0	0.00000000000000297	Transcriptional regulator, y4mF family	N/A
PADLOC	UHGV-0388458_10	retron_type_VI_hth_cluster2_1	51.7	0.000000000000026	N/A	Retron
Pfam	UHGV-0388458_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0388458_10	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0388458_10	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0388458_11	phrog_186	94.0	2.5e-27	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0388458_11	UniRef90_UPI00105581E5	187.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0388458_11	574375.BAGA_24015	57.0	0.00000208	Helix-turn-helix domain	N/A
Pfam	UHGV-0388458_11	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-0388458_11	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
Pfam	UHGV-0388458_11	PF11638	N/A	N/A	DnaA N-terminal domain	DnaA_N
KOfam	UHGV-0388458_12	K18640	127.4	1.5e-37	parM, stbA; plasmid segregation protein ParM	N/A
PHROG	UHGV-0388458_12	phrog_691	152.4	2.8026e-45	partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0388458_12	UniRef90_A0A1C6JGT4	487.0	0	ALP_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0388458_12	1151292.QEW_0755	332.0	0	Heat shock 70 kDa protein	N/A
Pfam	UHGV-0388458_12	PF17989	N/A	N/A	Actin like proteins N terminal domain	ALP_N
COG	UHGV-0388458_12	COG0443	N/A	N/A	Molecular chaperone DnaK (HSP70)	N/A
structural_annotation	UHGV-0388458_12	PF06723,MF_02207,NF010498,COG1077	N/A	N/A	N/A	N/A
PHROG	UHGV-0388458_13	phrog_14888	46.7	0.00000000000017	N/A	unknown function
KOfam	UHGV-0388458_15	K02342	87.9	1.1e-25	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0388458_15	phrog_192	116.7	1.1e-34	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0388458_15	UniRef90_UPI001C8BE5E8	629.0	0	3'-5' exonuclease	N/A
eggNOG-mapper	UHGV-0388458_15	1414720.CBYM010000017_gene3115	618.0	0	EXOIII	N/A
PADLOC	UHGV-0388458_15	cd06127	90.3	2.7e-26	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0388458_15	PF00929	N/A	N/A	Exonuclease	RNase_T
COG	UHGV-0388458_15	COG0847	N/A	N/A	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	N/A
KOfam	UHGV-0388458_16	K01448	104.3	1.4e-30	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0388458_16	phrog_435	178.0	0	endolysin	lysis
UniRef90	UHGV-0388458_16	UniRef90_UPI001C8B8D79	350.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0388458_16	1414720.CBYM010000014_gene2742	288.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0388458_16	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0388458_16	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0388458_16	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0388458_16	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0388458_17	phrog_9829	98.2	3.9e-29	N/A	unknown function
UniRef90	UHGV-0388458_17	UniRef90_R6GPV4	100.0	2.97e-25	Imm	N/A
structural_annotation	UHGV-0388458_19	PF08005,PF19972	N/A	N/A	N/A	N/A
KOfam	UHGV-0388458_21	K21478	68.2	6.8e-20	icaB; poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase [EC:3.5.1.-]	N/A
UniRef90	UHGV-0388458_21	UniRef90_UPI000F454F81	114.0	1.76e-23	polysaccharide deacetylase family protein	N/A
eggNOG-mapper	UHGV-0388458_21	1117319.PSPO_09194	64.3	0.0000000136	xylanase chitin deacetylase	N/A
Pfam	UHGV-0388458_21	PF01522	N/A	N/A	Polysaccharide deacetylase	Polysacc_deac_1
COG	UHGV-0388458_21	COG0726	N/A	N/A	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	N/A
structural_annotation	UHGV-0388458_22	PF13157,MF_01372,NF040827,COG3542	N/A	N/A	N/A	N/A
PHROG	UHGV-0388458_23	phrog_3558	369.6	0	tail protein	tail
UniRef90	UHGV-0388458_23	UniRef90_UPI0004B53C32	419.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0388458_23	1414720.CBYM010000040_gene1657	419.0	0	Phage minor structural protein, N-terminal	N/A
Pfam	UHGV-0388458_23	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0388458_23	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0388458_23	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0388458_24	phrog_33	53.3	0.0000000000000069	distal tail protein Dit	tail
UniRef90	UHGV-0388458_24	UniRef90_A0A1C6K0K3	238.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0388458_24	1414720.CBYM010000040_gene1656	175.0	0	PFAM Phage tail protein	N/A
COG	UHGV-0388458_24	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0388458_24	PF20195,PF21621,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0388458_25	phrog_1533	691.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0388458_25	UniRef90_UPI0018AC3B12	738.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0388458_25	632245.CLP_2687	422.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0388458_25	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0388458_25	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0388458_25	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0388458_25	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0388458_27	632245.CLP_2688	76.6	1.56e-16	N/A	N/A
structural_annotation	UHGV-0388458_27	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0388458_28	phrog_88	98.9	2e-29	major tail protein	tail
UniRef90	UHGV-0388458_28	UniRef90_A0A6M1WMM9	119.0	3.08e-30	Phage tail protein	N/A
eggNOG-mapper	UHGV-0388458_28	632245.CLP_2689	84.0	2.14e-17	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0388458_28	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0388458_28	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0388458_29	phrog_78	40.8	0.00000000004	tail terminator	connector
eggNOG-mapper	UHGV-0388458_29	536233.CLO_1367	98.6	2.26e-25	N/A	N/A
structural_annotation	UHGV-0388458_29	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0388458_30	phrog_5	47.0	0.00000000000061	tail completion or Neck1 protein	connector
eggNOG-mapper	UHGV-0388458_30	536233.CLO_1366	93.2	1.95e-22	N/A	N/A
structural_annotation	UHGV-0388458_30	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0388458_31	632245.CLP_2692	57.4	0.00000000469	Phage head-tail joining protein	N/A
Pfam	UHGV-0388458_31	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0388458_31	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0388458_32	phrog_40	41.1	0.000000000024	head-tail adaptor Ad1	connector
UniRef90	UHGV-0388458_32	UniRef90_UPI00164B66EB	88.2	7.39e-21	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0388458_32	1414720.CBYM010000002_gene570	79.7	2.79e-18	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0388458_32	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0388458_32	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0388458_32	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0388458_33	phrog_10	169.3	0	major head protein	head and packaging
UniRef90	UHGV-0388458_33	UniRef90_UPI0006A6D693	233.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0388458_33	536233.CLO_1363	211.0	0	Phage capsid family	N/A
Pfam	UHGV-0388458_33	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0388458_33	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0388458_33	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0388458_33	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0388458_34	K06904	103.5	2.9e-30	N/A	N/A
PHROG	UHGV-0388458_34	phrog_80	129.9	2.8e-38	head maturation protease	head and packaging
UniRef90	UHGV-0388458_34	UniRef90_UPI0009BAF53E	202.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0388458_34	1414720.CBYM010000001_gene698	192.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0388458_34	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0388458_34	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0388458_34	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0388458_34	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0388458_35	phrog_12	235.6	0	portal protein	head and packaging
UniRef90	UHGV-0388458_35	UniRef90_UPI0018E4C584	357.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0388458_35	1285586.H131_21312	330.0	0	Portal protein	N/A
Pfam	UHGV-0388458_35	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0388458_35	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0388458_35	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0388458_35	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0388458_36	phrog_9	252.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0388458_36	UniRef90_K6DIF2	671.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0388458_36	1196031.ALEG01000039_gene1812	653.0	0	Terminase	N/A
Pfam	UHGV-0388458_36	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0388458_36	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0388458_36	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0388458_36	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0388458_37	phrog_83	83.0	3.8e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0388458_37	UniRef90_A0A1W1X5Z0	147.0	4.40008e-42	Phage terminase, small subunit, putative, P27 family	N/A
eggNOG-mapper	UHGV-0388458_37	1196031.ALEG01000039_gene1811	128.0	2.56e-35	Phage terminase, small subunit	N/A
Pfam	UHGV-0388458_37	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0388458_37	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0388458_37	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0388458_37	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0388458	Yes	29,972	30	78	1